Ankit Bhardwaj

Sonish Sivarajkumar, Pratyush Tandale, Ankit Bhardwaj et al.

Transcription factors (TFs) play a vital role in the regulation of gene expression thereby making them critical to many cellular processes. In this study, we used graph machine learning methods to create a compendium of TF cascades using data extracted from the STRING database. A TF cascade is a sequence of TFs that regulate each other, forming a directed path in the TF network. We constructed a knowledge graph of 81,488 unique TF cascades, with the longest cascade consisting of 62 TFs. Our results highlight the complex and intricate nature of TF interactions, where multiple TFs work together to regulate gene expression. We also identified 10 TFs with the highest regulatory influence based on centrality measurements, providing valuable information for researchers interested in studying specific TFs. Furthermore, our pathway enrichment analysis revealed significant enrichment of various pathways and functional categories, including those involved in cancer and other diseases, as well as those involved in development, differentiation, and cell signaling. The enriched pathways identified in this study may have potential as targets for therapeutic intervention in diseases associated with dysregulation of transcription factors. We have released the dataset, knowledge graph, and graphML methods for the TF cascades, and created a website to display the results, which can be accessed by researchers interested in using this dataset. Our study provides a valuable resource for understanding the complex network of interactions between TFs and their regulatory roles in cellular processes.

Mihir Kulkarni, Satvik Golechha, Rishi Raj et al.

Tuberculosis (TB), an infectious bacterial disease, is a significant cause of death, especially in low-income countries, with an estimated ten million new cases reported globally in $2020$. While TB is treatable, non-adherence to the medication regimen is a significant cause of morbidity and mortality. Thus, proactively identifying patients at risk of dropping off their medication regimen enables corrective measures to mitigate adverse outcomes. Using a proxy measure of extreme non-adherence and a dataset of nearly $700,000$ patients from four states in India, we formulate and solve the machine learning (ML) problem of early prediction of non-adherence based on a custom rank-based metric. We train ML models and evaluate against baselines, achieving a $\sim 100\%$ lift over rule-based baselines and $\sim 214\%$ over a random classifier, taking into account country-wide large-scale future deployment. We deal with various issues in the process, including data quality, high-cardinality categorical data, low target prevalence, distribution shift, variation across cohorts, algorithmic fairness, and the need for robustness and explainability. Our findings indicate that risk stratification of non-adherent patients is a viable, deployable-at-scale ML solution. As the official AI partner of India's Central TB Division, we are working on multiple city and state-level pilots with the goal of pan-India deployment.

Ankit Bhardwaj, Ananth Balashankar, Shiva Iyer et al.

Urban air pollution hotspots pose significant health risks, yet their detection and analysis remain limited by the sparsity of public sensor networks. This paper addresses this challenge by combining predictive modeling and mechanistic approaches to comprehensively monitor pollution hotspots. We enhanced New Delhi's existing sensor network with 28 low-cost sensors, collecting PM2.5 data over 30 months from May 1, 2018, to Nov 1, 2020. Applying established definitions of hotspots to this data, we found the existence of additional 189 hidden hotspots apart from confirming 660 hotspots detected by the public network. Using predictive techniques like Space-Time Kriging, we identified hidden hotspots with 95% precision and 88% recall with 50% sensor failure rate, and with 98% precision and 95% recall with 50% missing sensors. The projected results of our predictive models were further compiled into policy recommendations for public authorities. Additionally, we developed a Gaussian Plume Dispersion Model to understand the mechanistic underpinnings of hotspot formation, incorporating an emissions inventory derived from local sources. Our mechanistic model is able to explain 65% of observed transient hotspots. Our findings underscore the importance of integrating data-driven predictive models with physics-based mechanistic models for scalable and robust air pollution management in resource-constrained settings.

Ankit Bhardwaj, Ananth Balashankar, Lakshminarayanan Subramanian

Spatio-temporal sensor data is often sparse, noisy, and irregular, and existing interpolation or learning methods struggle here because they either ignore governing PDEs or do not scale. We introduce FieldFormer, a transformer-based framework for mesh-free spatio-temporal field reconstruction that combines data-driven flexibility with physics-based structure. For each query, FieldFormer gathers a local neighborhood using a learnable velocity-scaled distance metric, enabling anisotropic adaptation to different propagation regimes. Neighborhoods are built efficiently via per-batch offset recomputation, and refined in an expectation-maximization style as the velocity scales evolve. Predictions are made by a local transformer encoder, and physics consistency is enforced through autograd-based PDE residuals and boundary-specific penalties. Across three benchmarks--a scalar anisotropic heat equation, a vector-valued shallow-water system, and a realistic advection-diffusion pollution simulation--FieldFormer consistently outperforms strong baselines by more than 40%. Our results demonstrate that FieldFormer enables accurate (RMSE$<10^{-2}$), efficient, and physically consistent field reconstruction from sparse (0.4%-2%) and noisy(10%) data.

Ankit Bhardwaj, Rohail Asim, Sachin Chauhan et al.

Free-flow road networks, such as suburban highways, are increasingly experiencing traffic congestion due to growing commuter inflow and limited infrastructure. Traditional control mechanisms, such as traffic signals or local heuristics, are ineffective or infeasible in these high-speed, signal-free environments. We introduce self-regulating cars, a reinforcement learning-based traffic control protocol that dynamically modulates vehicle speeds to optimize throughput and prevent congestion, without requiring new physical infrastructure. Our approach integrates classical traffic flow theory, gap acceptance models, and microscopic simulation into a physics-informed RL framework. By abstracting roads into super-segments, the agent captures emergent flow dynamics and learns robust speed modulation policies from instantaneous traffic observations. Evaluated in the high-fidelity PTV Vissim simulator on a real-world highway network, our method improves total throughput by 5%, reduces average delay by 13%, and decreases total stops by 3% compared to the no-control setting. It also achieves smoother, congestion-resistant flow while generalizing across varied traffic patterns, demonstrating its potential for scalable, ML-driven traffic management.