3.0IVAug 10, 2023
Attention-based 3D CNN with Multi-layer Features for Alzheimer's Disease Diagnosis using Brain ImagesYanteng Zhang, Qizhi Teng, Xiaohai He et al. · salesforce
Structural MRI and PET imaging play an important role in the diagnosis of Alzheimer's disease (AD), showing the morphological changes and glucose metabolism changes in the brain respectively. The manifestations in the brain image of some cognitive impairment patients are relatively inconspicuous, for example, it still has difficulties in achieving accurate diagnosis through sMRI in clinical practice. With the emergence of deep learning, convolutional neural network (CNN) has become a valuable method in AD-aided diagnosis, but some CNN methods cannot effectively learn the features of brain image, making the diagnosis of AD still presents some challenges. In this work, we propose an end-to-end 3D CNN framework for AD diagnosis based on ResNet, which integrates multi-layer features obtained under the effect of the attention mechanism to better capture subtle differences in brain images. The attention maps showed our model can focus on key brain regions related to the disease diagnosis. Our method was verified in ablation experiments with two modality images on 792 subjects from the ADNI database, where AD diagnostic accuracies of 89.71% and 91.18% were achieved based on sMRI and PET respectively, and also outperformed some state-of-the-art methods.
1.9CLFeb 4, 2024Code
Solution-oriented Agent-based Models Generation with Verifier-assisted Iterative In-context LearningTong Niu, Weihao Zhang, Rong Zhao
Agent-based models (ABMs) stand as an essential paradigm for proposing and validating hypothetical solutions or policies aimed at addressing challenges posed by complex systems and achieving various objectives. This process demands labor-intensive endeavors and multidisciplinary expertise. Large language models (LLMs) encapsulating cross-domain knowledge and programming proficiency could potentially alleviate the difficulty of this process. However, LLMs excel in handling sequential information, making it challenging for analyzing the intricate interactions and nonlinear dynamics inherent in ABMs. Additionally, due to the lack of self-evaluation capability of LLMs, relying solely on LLMs is insufficient to effectively accomplish this process. In this paper, we present SAGE, a general solution-oriented ABM generation framework designed for automatic modeling and generating solutions for targeted problems. Unlike approaches reliant on expert handcrafting or resource-intensive neural network training, SAGE establishes a verifier-assisted iterative in-context learning process employing large language models (LLMs) to leverages their inherent cross-domain knowledge for tackling intricate demands from diverse domain scenarios. In SAGE, we introduce an semi-structured conceptual representation expliciting the intricate structures of ABMs and an objective representation to guide LLMs in modeling scenarios and proposing hypothetical solutions through in-context learning. To ensure the model executability and solution feasibility, SAGE devises a two-level verifier with chain-of-thought prompting tailored to the complex interactions and non-linear dynamics of ABMs, driving the iterative generation optimization. Moreover, we construct an evaluation dataset of solution-oriented ABMs from open sources.It contains practical models across various domains.
3.7CVSep 18, 2024
Mixture of Prompt Learning for Vision Language ModelsYu Du, Tong Niu, Rong Zhao
As powerful pre-trained vision-language models (VLMs) like CLIP gain prominence, numerous studies have attempted to combine VLMs for downstream tasks. Among these, prompt learning has been validated as an effective method for adapting to new tasks, which only requiring a small number of parameters. However, current prompt learning methods face two challenges: first, a single soft prompt struggles to capture the diverse styles and patterns within a dataset; second, fine-tuning soft prompts is prone to overfitting. To address these challenges, we propose a mixture of soft prompt learning method incorporating a routing module. This module is able to capture a dataset's varied styles and dynamically selects the most suitable prompts for each instance. Additionally, we introduce a novel gating mechanism to ensure the router selects prompts based on their similarity to hard prompt templates, which both retaining knowledge from hard prompts and improving selection accuracy. We also implement semantically grouped text-level supervision, initializing each soft prompt with the token embeddings of manually designed templates from its group and applied a contrastive loss between the resulted text feature and hard prompt encoded text feature. This supervision ensures that the text features derived from soft prompts remain close to those from their corresponding hard prompts, preserving initial knowledge and mitigating overfitting. Our method has been validated on 11 datasets, demonstrating evident improvements in few-shot learning, domain generalization, and base-to-new generalization scenarios compared to existing baselines. The code will be available at \url{https://anonymous.4open.science/r/mocoop-6387}
13.5CLOct 31, 2024
JudgeRank: Leveraging Large Language Models for Reasoning-Intensive RerankingTong Niu, Shafiq Joty, Ye Liu et al.
Accurate document retrieval is crucial for the success of retrieval-augmented generation (RAG) applications, including open-domain question answering and code completion. While large language models (LLMs) have been employed as dense encoders or listwise rerankers in RAG systems, they often struggle with reasoning-intensive tasks because they lack nuanced analysis when judging document relevance. To address this limitation, we introduce JudgeRank, a novel agentic reranker that emulates human cognitive processes when assessing document relevance. Our approach consists of three key steps: (1) query analysis to identify the core problem, (2) document analysis to extract a query-aware summary, and (3) relevance judgment to provide a concise assessment of document relevance. We evaluate JudgeRank on the reasoning-intensive BRIGHT benchmark, demonstrating substantial performance improvements over first-stage retrieval methods and outperforming other popular reranking approaches. In addition, JudgeRank performs on par with fine-tuned state-of-the-art rerankers on the popular BEIR benchmark, validating its zero-shot generalization capability. Through comprehensive ablation studies, we demonstrate that JudgeRank's performance generalizes well across LLMs of various sizes while ensembling them yields even more accurate reranking than individual models.
27.0CLOct 24, 2020
Char2Subword: Extending the Subword Embedding Space Using Robust Character CompositionalityGustavo Aguilar, Bryan McCann, Tong Niu et al.
Byte-pair encoding (BPE) is a ubiquitous algorithm in the subword tokenization process of language models as it provides multiple benefits. However, this process is solely based on pre-training data statistics, making it hard for the tokenizer to handle infrequent spellings. On the other hand, though robust to misspellings, pure character-level models often lead to unreasonably long sequences and make it harder for the model to learn meaningful words. To alleviate these challenges, we propose a character-based subword module (char2subword) that learns the subword embedding table in pre-trained models like BERT. Our char2subword module builds representations from characters out of the subword vocabulary, and it can be used as a drop-in replacement of the subword embedding table. The module is robust to character-level alterations such as misspellings, word inflection, casing, and punctuation. We integrate it further with BERT through pre-training while keeping BERT transformer parameters fixed--and thus, providing a practical method. Finally, we show that incorporating our module to mBERT significantly improves the performance on the social media linguistic code-switching evaluation (LinCE) benchmark.
4.4CLOct 18, 2020
Explaining and Improving Model Behavior with k Nearest Neighbor RepresentationsNazneen Fatema Rajani, Ben Krause, Wengpeng Yin et al.
Interpretability techniques in NLP have mainly focused on understanding individual predictions using attention visualization or gradient-based saliency maps over tokens. We propose using k nearest neighbor (kNN) representations to identify training examples responsible for a model's predictions and obtain a corpus-level understanding of the model's behavior. Apart from interpretability, we show that kNN representations are effective at uncovering learned spurious associations, identifying mislabeled examples, and improving the fine-tuned model's performance. We focus on Natural Language Inference (NLI) as a case study and experiment with multiple datasets. Our method deploys backoff to kNN for BERT and RoBERTa on examples with low model confidence without any update to the model parameters. Our results indicate that the kNN approach makes the finetuned model more robust to adversarial inputs.
32.2CLApr 17, 2018
Detecting Linguistic Characteristics of Alzheimer's Dementia by Interpreting Neural ModelsSweta Karlekar, Tong Niu, Mohit Bansal
Alzheimer's disease (AD) is an irreversible and progressive brain disease that can be stopped or slowed down with medical treatment. Language changes serve as a sign that a patient's cognitive functions have been impacted, potentially leading to early diagnosis. In this work, we use NLP techniques to classify and analyze the linguistic characteristics of AD patients using the DementiaBank dataset. We apply three neural models based on CNNs, LSTM-RNNs, and their combination, to distinguish between language samples from AD and control patients. We achieve a new independent benchmark accuracy for the AD classification task. More importantly, we next interpret what these neural models have learned about the linguistic characteristics of AD patients, via analysis based on activation clustering and first-derivative saliency techniques. We then perform novel automatic pattern discovery inside activation clusters, and consolidate AD patients' distinctive grammar patterns. Additionally, we show that first derivative saliency can not only rediscover previous language patterns of AD patients, but also shed light on the limitations of neural models. Lastly, we also include analysis of gender-separated AD data.