Nazli Goharian

Saeedeh Davoudi, Reihaneh Iranmanesh, Ophir Frieder et al.

Medical knowledge is continuously evolving. This creates a need to update or selectively forget information encoded in already-trained medical LLMs. Machine unlearning aims to remove the influence of specific training data from a model without full retraining. Yet, existing unlearning benchmarks rely on synthetic or small-scale general data, leaving clinical unlearning understudied. We introduce AMNESIA, the first large-scale, open source benchmark for medical unlearning, with 70,560 question-answer pairs from 8,820 patient notes across 11 disease categories. AMNESIA includes both factual questions testing direct recall and reasoning questions testing clinical inference. We use it to evaluate four widely used unlearning methods at both random patient and disease-level, and introduce a new metric for detecting leakage of medical terminology. We show that unlearning individual patients erodes knowledge of others with the same condition, calling for methods that can better separate patients from shared clinical knowledge.

Hrishikesh Kulkarni, Sean MacAvaney, Nazli Goharian et al.

Retrieval approaches that score documents based on learned dense vectors (i.e., dense retrieval) rather than lexical signals (i.e., conventional retrieval) are increasingly popular. Their ability to identify related documents that do not necessarily contain the same terms as those appearing in the user's query (thereby improving recall) is one of their key advantages. However, to actually achieve these gains, dense retrieval approaches typically require an exhaustive search over the document collection, making them considerably more expensive at query-time than conventional lexical approaches. Several techniques aim to reduce this computational overhead by approximating the results of a full dense retriever. Although these approaches reasonably approximate the top results, they suffer in terms of recall -- one of the key advantages of dense retrieval. We introduce 'LADR' (Lexically-Accelerated Dense Retrieval), a simple-yet-effective approach that improves the efficiency of existing dense retrieval models without compromising on retrieval effectiveness. LADR uses lexical retrieval techniques to seed a dense retrieval exploration that uses a document proximity graph. We explore two variants of LADR: a proactive approach that expands the search space to the neighbors of all seed documents, and an adaptive approach that selectively searches the documents with the highest estimated relevance in an iterative fashion. Through extensive experiments across a variety of dense retrieval models, we find that LADR establishes a new dense retrieval effectiveness-efficiency Pareto frontier among approximate k nearest neighbor techniques. Further, we find that when tuned to take around 8ms per query in retrieval latency on our hardware, LADR consistently achieves both precision and recall that are on par with an exhaustive search on standard benchmarks.

Hrishikesh Kulkarni, Nazli Goharian, Ophir Frieder et al.

Generative language models hallucinate. That is, at times, they generate factually flawed responses. These inaccuracies are particularly insidious because the responses are fluent and well-articulated. We focus on the task of Grounded Answer Generation (part of Generative IR), which aims to produce direct answers to a user's question based on results retrieved from a search engine. We address hallucination by adapting an existing genetic generation approach with a new 'balanced fitness function' consisting of a cross-encoder model for relevance and an n-gram overlap metric to promote grounding. Our balanced fitness function approach quadruples the grounded answer generation accuracy while maintaining high relevance.

Sajad Sotudeh, Nazli Goharian, Zachary Young

Mental health remains a significant challenge of public health worldwide. With increasing popularity of online platforms, many use the platforms to share their mental health conditions, express their feelings, and seek help from the community and counselors. Some of these platforms, such as Reachout, are dedicated forums where the users register to seek help. Others such as Reddit provide subreddits where the users publicly but anonymously post their mental health distress. Although posts are of varying length, it is beneficial to provide a short, but informative summary for fast processing by the counselors. To facilitate research in summarization of mental health online posts, we introduce Mental Health Summarization dataset, MentSum, containing over 24k carefully selected user posts from Reddit, along with their short user-written summary (called TLDR) in English from 43 mental health subreddits. This domain-specific dataset could be of interest not only for generating short summaries on Reddit, but also for generating summaries of posts on the dedicated mental health forums such as Reachout. We further evaluate both extractive and abstractive state-of-the-art summarization baselines in terms of Rouge scores, and finally conduct an in-depth human evaluation study of both user-written and system-generated summaries, highlighting challenges in this research.

Sajad Sotudeh, Nazli Goharian, Hanieh Deilamsalehy et al.

Automatically generating short summaries from users' online mental health posts could save counselors' reading time and reduce their fatigue so that they can provide timely responses to those seeking help for improving their mental state. Recent Transformers-based summarization models have presented a promising approach to abstractive summarization. They go beyond sentence selection and extractive strategies to deal with more complicated tasks such as novel word generation and sentence paraphrasing. Nonetheless, these models have a prominent shortcoming; their training strategy is not quite efficient, which restricts the model's performance. In this paper, we include a curriculum learning approach to reweigh the training samples, bringing about an efficient learning procedure. We apply our model on extreme summarization dataset of MentSum posts -- a dataset of mental health related posts from Reddit social media. Compared to the state-of-the-art model, our proposed method makes substantial gains in terms of Rouge and Bertscore evaluation metrics, yielding 3.5% (Rouge-1), 10.4% (Rouge-2), and 4.7% (Rouge-L), 1.5% (Bertscore) relative improvements.

Sajad Sotudeh, Hanieh Deilamsalehy, Franck Dernoncourt et al.

Recent Transformer-based summarization models have provided a promising approach to abstractive summarization. They go beyond sentence selection and extractive strategies to deal with more complicated tasks such as novel word generation and sentence paraphrasing. Nonetheless, these models have two shortcomings: (1) they often perform poorly in content selection, and (2) their training strategy is not quite efficient, which restricts model performance. In this paper, we explore two orthogonal ways to compensate for these pitfalls. First, we augment the Transformer network with a sentence cross-attention module in the decoder, encouraging more abstraction of salient content. Second, we include a curriculum learning approach to reweight the training samples, bringing about an efficient learning procedure. Our second approach to enhance the training strategy of Transformers networks makes stronger gains as compared to the first approach. We apply our model on extreme summarization dataset of Reddit TIFU posts. We further look into three cross-domain summarization datasets (Webis-TLDR-17, CNN/DM, and XSum), measuring the efficacy of curriculum learning when applied in summarization. Moreover, a human evaluation is conducted to show the efficacy of the proposed method in terms of qualitative criteria, namely, fluency, informativeness, and overall quality.

Sajad Sotudeh, Nazli Goharian

Many scientific papers such as those in arXiv and PubMed data collections have abstracts with varying lengths of 50-1000 words and average length of approximately 200 words, where longer abstracts typically convey more information about the source paper. Up to recently, scientific summarization research has typically focused on generating short, abstract-like summaries following the existing datasets used for scientific summarization. In domains where the source text is relatively long-form, such as in scientific documents, such summary is not able to go beyond the general and coarse overview and provide salient information from the source document. The recent interest to tackle this problem motivated curation of scientific datasets, arXiv-Long and PubMed-Long, containing human-written summaries of 400-600 words, hence, providing a venue for research in generating long/extended summaries. Extended summaries facilitate a faster read while providing details beyond coarse information. In this paper, we propose TSTR, an extractive summarizer that utilizes the introductory information of documents as pointers to their salient information. The evaluations on two existing large-scale extended summarization datasets indicate statistically significant improvement in terms of Rouge and average Rouge (F1) scores (except in one case) as compared to strong baselines and state-of-the-art. Comprehensive human evaluations favor our generated extended summaries in terms of cohesion and completeness.

Sajad Sotudeh, Nazli Goharian

Query-focused summarization (QFS) is a challenging task in natural language processing that generates summaries to address specific queries. The broader field of Generative Information Retrieval (Gen-IR) aims to revolutionize information extraction from vast document corpora through generative approaches, encompassing Generative Document Retrieval (GDR) and Grounded Answer Retrieval (GAR). This paper highlights the role of QFS in Grounded Answer Generation (GAR), a key subdomain of Gen-IR that produces human-readable answers in direct correspondence with queries, grounded in relevant documents. In this study, we propose QontSum, a novel approach for QFS that leverages contrastive learning to help the model attend to the most relevant regions of the input document. We evaluate our approach on a couple of benchmark datasets for QFS and demonstrate that it either outperforms existing state-of-the-art or exhibits a comparable performance with considerably reduced computational cost through enhancements in the fine-tuning stage, rather than relying on large-scale pre-training experiments, which is the focus of current SOTA. Moreover, we conducted a human study and identified improvements in the relevance of generated summaries to the posed queries without compromising fluency. We further conduct an error analysis study to understand our model's limitations and propose avenues for future research.

Reihaneh Iranmanesh, Saeedeh Davoudi, Pasha Abrishamchian et al.

This paper presents a comprehensive evaluation framework for assessing the cultural competence of large language models (LLMs) in Persian. Existing Persian cultural benchmarks rely predominantly on multiple-choice formats and English-centric metrics that fail to capture Persian's morphological complexity and semantic nuance. Our framework introduces a Persian-specific short-answer evaluation that combines rule-based morphological normalization with a hybrid syntactic and semantic similarity module, enabling robust soft-match scoring beyond exact string overlap. Through systematic evaluation of 15 state-of-the-art open- and closed-source models, we demonstrate that our hybrid evaluation improves scoring consistency by +10% compared to exact-match baselines by capturing meaning that surface-level methods cannot detect. We publicly release our evaluation framework, providing the first standardized benchmark for measuring cultural understanding in Persian and establishing a reproducible foundation for cross-cultural LLM evaluation research.

Sajad Sotudeh, Hanieh Deilamsalehy, Franck Dernoncourt et al.

Recent models in developing summarization systems consist of millions of parameters and the model performance is highly dependent on the abundance of training data. While most existing summarization corpora contain data in the order of thousands to one million, generation of large-scale summarization datasets in order of couple of millions is yet to be explored. Practically, more data is better at generalizing the training patterns to unseen data. In this paper, we introduce TLDR9+ -- a large-scale summarization dataset -- containing over 9 million training instances extracted from Reddit discussion forum (https://github.com/sajastu/reddit_collector). This dataset is specifically gathered to perform extreme summarization (i.e., generating one-sentence summary in high compression and abstraction) and is more than twice larger than the previously proposed dataset. We go one step further and with the help of human annotations, we distill a more fine-grained dataset by sampling High-Quality instances from TLDR9+ and call it TLDRHQ dataset. We further pinpoint different state-of-the-art summarization models on our proposed datasets.

Sajad Sotudeh, Arman Cohan, Nazli Goharian

Prior work in document summarization has mainly focused on generating short summaries of a document. While this type of summary helps get a high-level view of a given document, it is desirable in some cases to know more detailed information about its salient points that can't fit in a short summary. This is typically the case for longer documents such as a research paper, legal document, or a book. In this paper, we present a new method for generating extended summaries of long papers. Our method exploits hierarchical structure of the documents and incorporates it into an extractive summarization model through a multi-task learning approach. We then present our results on three long summarization datasets, arXiv-Long, PubMed-Long, and Longsumm. Our method outperforms or matches the performance of strong baselines. Furthermore, we perform a comprehensive analysis over the generated results, shedding insights on future research for long-form summary generation task. Our analysis shows that our multi-tasking approach can adjust extraction probability distribution to the favor of summary-worthy sentences across diverse sections. Our datasets, and codes are publicly available at https://github.com/Georgetown-IR-Lab/ExtendedSumm

Sean MacAvaney, Arman Cohan, Nazli Goharian

With worldwide concerns surrounding the Severe Acute Respiratory Syndrome Coronavirus 2 (SARS-CoV-2), there is a rapidly growing body of literature on the virus. Clinicians, researchers, and policy-makers need a way to effectively search these articles. In this work, we present a search system called SLEDGE, which utilizes SciBERT to effectively re-rank articles. We train the model on a general-domain answer ranking dataset, and transfer the relevance signals to SARS-CoV-2 for evaluation. We observe SLEDGE's effectiveness as a strong baseline on the TREC-COVID challenge (topping the learderboard with an nDCG@10 of 0.6844). Insights provided by a detailed analysis provide some potential future directions to explore, including the importance of filtering by date and the potential of neural methods that rely more heavily on count signals. We release the code to facilitate future work on this critical task at https://github.com/Georgetown-IR-Lab/covid-neural-ir

Sajad Sotudeh, Nazli Goharian

This study examines the potential of integrating Learning-to-Rank (LTR) with Query-focused Summarization (QFS) to enhance the summary relevance via content prioritization. Using a shared secondary decoder with the summarization decoder, we carry out the LTR task at the segment level. Compared to the state-of-the-art, our model outperforms on QMSum benchmark (all metrics) and matches on SQuALITY benchmark (2 metrics) as measured by Rouge and BertScore while offering a lower training overhead. Specifically, on the QMSum benchmark, our proposed system achieves improvements, particularly in Rouge-L (+0.42) and BertScore (+0.34), indicating enhanced understanding and relevance. While facing minor challenges in Rouge-1 and Rouge-2 scores on the SQuALITY benchmark, the model significantly excels in Rouge-L (+1.47), underscoring its capability to generate coherent summaries. Human evaluations emphasize the efficacy of our method in terms of relevance and faithfulness of the generated summaries, without sacrificing fluency. A deeper analysis reveals our model's superiority over the state-of-the-art for broad queries, as opposed to specific ones, from a qualitative standpoint. We further present an error analysis of our model, pinpointing challenges faced and suggesting potential directions for future research in this field.

Sean MacAvaney, Andrew Yates, Sergey Feldman et al.

Managing the data for Information Retrieval (IR) experiments can be challenging. Dataset documentation is scattered across the Internet and once one obtains a copy of the data, there are numerous different data formats to work with. Even basic formats can have subtle dataset-specific nuances that need to be considered for proper use. To help mitigate these challenges, we introduce a new robust and lightweight tool (ir_datasets) for acquiring, managing, and performing typical operations over datasets used in IR. We primarily focus on textual datasets used for ad-hoc search. This tool provides both a Python and command line interface to numerous IR datasets and benchmarks. To our knowledge, this is the most extensive tool of its kind. Integrations with popular IR indexing and experimentation toolkits demonstrate the tool's utility. We also provide documentation of these datasets through the ir_datasets catalog: https://ir-datasets.com/. The catalog acts as a hub for information on datasets used in IR, providing core information about what data each benchmark provides as well as links to more detailed information. We welcome community contributions and intend to continue to maintain and grow this tool.

Tong Xiang, Sean MacAvaney, Eugene Yang et al.

Despite the recent successes of transformer-based models in terms of effectiveness on a variety of tasks, their decisions often remain opaque to humans. Explanations are particularly important for tasks like offensive language or toxicity detection on social media because a manual appeal process is often in place to dispute automatically flagged content. In this work, we propose a technique to improve the interpretability of these models, based on a simple and powerful assumption: a post is at least as toxic as its most toxic span. We incorporate this assumption into transformer models by scoring a post based on the maximum toxicity of its spans and augmenting the training process to identify correct spans. We find this approach effective and can produce explanations that exceed the quality of those provided by Logistic Regression analysis (often regarded as a highly-interpretable model), according to a human study.

Sean MacAvaney, Sergey Feldman, Nazli Goharian et al.

Pretrained contextualized language models such as BERT and T5 have established a new state-of-the-art for ad-hoc search. However, it is not yet well-understood why these methods are so effective, what makes some variants more effective than others, and what pitfalls they may have. We present a new comprehensive framework for Analyzing the Behavior of Neural IR ModeLs (ABNIRML), which includes new types of diagnostic probes that allow us to test several characteristics -- such as writing styles, factuality, sensitivity to paraphrasing and word order -- that are not addressed by previous techniques. To demonstrate the value of the framework, we conduct an extensive empirical study that yields insights into the factors that contribute to the neural model's gains, and identify potential unintended biases the models exhibit. Some of our results confirm conventional wisdom, like that recent neural ranking models rely less on exact term overlap with the query, and instead leverage richer linguistic information, evidenced by their higher sensitivity to word and sentence order. Other results are more surprising, such as that some models (e.g., T5 and ColBERT) are biased towards factually correct (rather than simply relevant) texts. Further, some characteristics vary even for the same base language model, and other characteristics can appear due to random variations during model training.

Sean MacAvaney, Arman Cohan, Nazli Goharian

With worldwide concerns surrounding the Severe Acute Respiratory Syndrome Coronavirus 2 (SARS-CoV-2), there is a rapidly growing body of scientific literature on the virus. Clinicians, researchers, and policy-makers need to be able to search these articles effectively. In this work, we present a zero-shot ranking algorithm that adapts to COVID-related scientific literature. Our approach filters training data from another collection down to medical-related queries, uses a neural re-ranking model pre-trained on scientific text (SciBERT), and filters the target document collection. This approach ranks top among zero-shot methods on the TREC COVID Round 1 leaderboard, and exhibits a P@5 of 0.80 and an nDCG@10 of 0.68 when evaluated on both Round 1 and 2 judgments. Despite not relying on TREC-COVID data, our method outperforms models that do. As one of the first search methods to thoroughly evaluate COVID-19 search, we hope that this serves as a strong baseline and helps in the global crisis.

Michael Kranzlein, Shabnam Behzad, Nazli Goharian

This paper presents our systems for SemEval 2020 Shared Task 11: Detection of Propaganda Techniques in News Articles. We participate in both the span identification and technique classification subtasks and report on experiments using different BERT-based models along with handcrafted features. Our models perform well above the baselines for both tasks, and we contribute ablation studies and discussion of our results to dissect the effectiveness of different features and techniques with the goal of aiding future studies in propaganda detection.

Sajad Sotudeh, Tong Xiang, Hao-Ren Yao et al.

Offensive language detection is an important and challenging task in natural language processing. We present our submissions to the OffensEval 2020 shared task, which includes three English sub-tasks: identifying the presence of offensive language (Sub-task A), identifying the presence of target in offensive language (Sub-task B), and identifying the categories of the target (Sub-task C). Our experiments explore using a domain-tuned contextualized language model (namely, BERT) for this task. We also experiment with different components and configurations (e.g., a multi-view SVM) stacked upon BERT models for specific sub-tasks. Our submissions achieve F1 scores of 91.7% in Sub-task A, 66.5% in Sub-task B, and 63.2% in Sub-task C. We perform an ablation study which reveals that domain tuning considerably improves the classification performance. Furthermore, error analysis shows common misclassification errors made by our model and outlines research directions for future.

Sean MacAvaney, Franck Dernoncourt, Walter Chang et al.

We present an elegant and effective approach for addressing limitations in existing multi-label classification models by incorporating interaction matching, a concept shown to be useful for ad-hoc search result ranking. By performing soft n-gram interaction matching, we match labels with natural language descriptions (which are common to have in most multi-labeling tasks). Our approach can be used to enhance existing multi-label classification approaches, which are biased toward frequently-occurring labels. We evaluate our approach on two challenging tasks: automatic medical coding of clinical notes and automatic labeling of entities from software tutorial text. Our results show that our method can yield up to an 11% relative improvement in macro performance, with most of the gains stemming labels that appear infrequently in the training set (i.e., the long tail of labels).

Sajad Sotudeh, Nazli Goharian, Ross W. Filice

Sequence-to-sequence (seq2seq) network is a well-established model for text summarization task. It can learn to produce readable content; however, it falls short in effectively identifying key regions of the source. In this paper, we approach the content selection problem for clinical abstractive summarization by augmenting salient ontological terms into the summarizer. Our experiments on two publicly available clinical data sets (107,372 reports of MIMIC-CXR, and 3,366 reports of OpenI) show that our model statistically significantly boosts state-of-the-art results in terms of Rouge metrics (with improvements: 2.9% RG-1, 2.5% RG-2, 1.9% RG-L), in the healthcare domain where any range of improvement impacts patients' welfare.

Sean MacAvaney, Franco Maria Nardini, Raffaele Perego et al.

In precision-oriented tasks like answer ranking, it is more important to rank many relevant answers highly than to retrieve all relevant answers. It follows that a good ranking strategy would be to learn how to identify the easiest correct answers first (i.e., assign a high ranking score to answers that have characteristics that usually indicate relevance, and a low ranking score to those with characteristics that do not), before incorporating more complex logic to handle difficult cases (e.g., semantic matching or reasoning). In this work, we apply this idea to the training of neural answer rankers using curriculum learning. We propose several heuristics to estimate the difficulty of a given training sample. We show that the proposed heuristics can be used to build a training curriculum that down-weights difficult samples early in the training process. As the training process progresses, our approach gradually shifts to weighting all samples equally, regardless of difficulty. We present a comprehensive evaluation of our proposed idea on three answer ranking datasets. Results show that our approach leads to superior performance of two leading neural ranking architectures, namely BERT and ConvKNRM, using both pointwise and pairwise losses. When applied to a BERT-based ranker, our method yields up to a 4% improvement in MRR and a 9% improvement in P@1 (compared to the model trained without a curriculum). This results in models that can achieve comparable performance to more expensive state-of-the-art techniques.

Sean MacAvaney, Franco Maria Nardini, Raffaele Perego et al.

Deep pretrained transformer networks are effective at various ranking tasks, such as question answering and ad-hoc document ranking. However, their computational expenses deem them cost-prohibitive in practice. Our proposed approach, called PreTTR (Precomputing Transformer Term Representations), considerably reduces the query-time latency of deep transformer networks (up to a 42x speedup on web document ranking) making these networks more practical to use in a real-time ranking scenario. Specifically, we precompute part of the document term representations at indexing time (without a query), and merge them with the query representation at query time to compute the final ranking score. Due to the large size of the token representations, we also propose an effective approach to reduce the storage requirement by training a compression layer to match attention scores. Our compression technique reduces the storage required up to 95% and it can be applied without a substantial degradation in ranking performance.

Sean MacAvaney, Franco Maria Nardini, Raffaele Perego et al.

The identification of relevance with little textual context is a primary challenge in passage retrieval. We address this problem with a representation-based ranking approach that: (1) explicitly models the importance of each term using a contextualized language model; (2) performs passage expansion by propagating the importance to similar terms; and (3) grounds the representations in the lexicon, making them interpretable. Passage representations can be pre-computed at index time to reduce query-time latency. We call our approach EPIC (Expansion via Prediction of Importance with Contextualization). We show that EPIC significantly outperforms prior importance-modeling and document expansion approaches. We also observe that the performance is additive with the current leading first-stage retrieval methods, further narrowing the gap between inexpensive and cost-prohibitive passage ranking approaches. Specifically, EPIC achieves a MRR@10 of 0.304 on the MS-MARCO passage ranking dataset with 78ms average query latency on commodity hardware. We also find that the latency is further reduced to 68ms by pruning document representations, with virtually no difference in effectiveness.

Sean MacAvaney, Arman Cohan, Nazli Goharian et al.

Medical errors are a major public health concern and a leading cause of death worldwide. Many healthcare centers and hospitals use reporting systems where medical practitioners write a preliminary medical report and the report is later reviewed, revised, and finalized by a more experienced physician. The revisions range from stylistic to corrections of critical errors or misinterpretations of the case. Due to the large quantity of reports written daily, it is often difficult to manually and thoroughly review all the finalized reports to find such errors and learn from them. To address this challenge, we propose a novel ranking approach, consisting of textual and ontological overlaps between the preliminary and final versions of reports. The approach learns to rank the reports based on the degree of discrepancy between the versions. This allows medical practitioners to easily identify and learn from the reports in which their interpretation most substantially differed from that of the attending physician (who finalized the report). This is a crucial step towards uncovering potential errors and helping medical practitioners to learn from such errors, thus improving patient-care in the long run. We evaluate our model on a dataset of radiology reports and show that our approach outperforms both previously-proposed approaches and more recent language models by 4.5% to 15.4%.

Sean MacAvaney, Luca Soldaini, Nazli Goharian

While billions of non-English speaking users rely on search engines every day, the problem of ad-hoc information retrieval is rarely studied for non-English languages. This is primarily due to a lack of data set that are suitable to train ranking algorithms. In this paper, we tackle the lack of data by leveraging pre-trained multilingual language models to transfer a retrieval system trained on English collections to non-English queries and documents. Our model is evaluated in a zero-shot setting, meaning that we use them to predict relevance scores for query-document pairs in languages never seen during training. Our results show that the proposed approach can significantly outperform unsupervised retrieval techniques for Arabic, Chinese Mandarin, and Spanish. We also show that augmenting the English training collection with some examples from the target language can sometimes improve performance.

Sean MacAvaney, Sajad Sotudeh, Arman Cohan et al.

Automatically generating accurate summaries from clinical reports could save a clinician's time, improve summary coverage, and reduce errors. We propose a sequence-to-sequence abstractive summarization model augmented with domain-specific ontological information to enhance content selection and summary generation. We apply our method to a dataset of radiology reports and show that it significantly outperforms the current state-of-the-art on this task in terms of rouge scores. Extensive human evaluation conducted by a radiologist further indicates that this approach yields summaries that are less likely to omit important details, without sacrificing readability or accuracy.

Sean MacAvaney, Andrew Yates, Arman Cohan et al.

Although considerable attention has been given to neural ranking architectures recently, far less attention has been paid to the term representations that are used as input to these models. In this work, we investigate how two pretrained contextualized language models (ELMo and BERT) can be utilized for ad-hoc document ranking. Through experiments on TREC benchmarks, we find that several existing neural ranking architectures can benefit from the additional context provided by contextualized language models. Furthermore, we propose a joint approach that incorporates BERT's classification vector into existing neural models and show that it outperforms state-of-the-art ad-hoc ranking baselines. We call this joint approach CEDR (Contextualized Embeddings for Document Ranking). We also address practical challenges in using these models for ranking, including the maximum input length imposed by BERT and runtime performance impacts of contextualized language models.

Sean MacAvaney, Andrew Yates, Arman Cohan et al.

Many questions cannot be answered simply; their answers must include numerous nuanced details and additional context. Complex Answer Retrieval (CAR) is the retrieval of answers to such questions. In their simplest form, these questions are constructed from a topic entity (e.g., `cheese') and a facet (e.g., `health effects'). While topic matching has been thoroughly explored, we observe that some facets use general language that is unlikely to appear verbatim in answers. We call these low-utility facets. In this work, we present an approach to CAR that identifies and addresses low-utility facets. We propose two estimators of facet utility. These include exploiting the hierarchical structure of CAR queries and using facet frequency information from training data. To improve the retrieval performance on low-utility headings, we also include entity similarity scores using knowledge graph embeddings. We apply our approaches to a leading neural ranking technique, and evaluate using the TREC CAR dataset. We find that our approach perform significantly better than the unmodified neural ranker and other leading CAR techniques. We also provide a detailed analysis of our results, and verify that low-utility facets are indeed more difficult to match, and that our approach improves the performance for these difficult queries.

Sean MacAvaney, Bart Desmet, Arman Cohan et al.

Self-reported diagnosis statements have been widely employed in studying language related to mental health in social media. However, existing research has largely ignored the temporality of mental health diagnoses. In this work, we introduce RSDD-Time: a new dataset of 598 manually annotated self-reported depression diagnosis posts from Reddit that include temporal information about the diagnosis. Annotations include whether a mental health condition is present and how recently the diagnosis happened. Furthermore, we include exact temporal spans that relate to the date of diagnosis. This information is valuable for various computational methods to examine mental health through social media because one's mental health state is not static. We also test several baseline classification and extraction approaches, which suggest that extracting temporal information from self-reported diagnosis statements is challenging.

Arman Cohan, Bart Desmet, Andrew Yates et al.

Mental health is a significant and growing public health concern. As language usage can be leveraged to obtain crucial insights into mental health conditions, there is a need for large-scale, labeled, mental health-related datasets of users who have been diagnosed with one or more of such conditions. In this paper, we investigate the creation of high-precision patterns to identify self-reported diagnoses of nine different mental health conditions, and obtain high-quality labeled data without the need for manual labelling. We introduce the SMHD (Self-reported Mental Health Diagnoses) dataset and make it available. SMHD is a novel large dataset of social media posts from users with one or multiple mental health conditions along with matched control users. We examine distinctions in users' language, as measured by linguistic and psychological variables. We further explore text classification methods to identify individuals with mental conditions through their language.

Sean MacAvaney, Andrew Yates, Arman Cohan et al.

Complex answer retrieval (CAR) is the process of retrieving answers to questions that have multifaceted or nuanced answers. In this work, we present two novel approaches for CAR based on the observation that question facets can vary in utility: from structural (facets that can apply to many similar topics, such as 'History') to topical (facets that are specific to the question's topic, such as the 'Westward expansion' of the United States). We first explore a way to incorporate facet utility into ranking models during query term score combination. We then explore a general approach to reform the structure of ranking models to aid in learning of facet utility in the query-document term matching phase. When we use our techniques with a leading neural ranker on the TREC CAR dataset, our methods rank first in the 2017 TREC CAR benchmark, and yield up to 26% higher performance than the next best method.

Luca Soldaini, Timothy Walsh, Arman Cohan et al.

In recent years, online communities have formed around suicide and self-harm prevention. While these communities offer support in moment of crisis, they can also normalize harmful behavior, discourage professional treatment, and instigate suicidal ideation. In this work, we focus on how interaction with others in such a community affects the mental state of users who are seeking support. We first build a dataset of conversation threads between users in a distressed state and community members offering support. We then show how to construct a classifier to predict whether distressed users are helped or harmed by the interactions in the thread, and we achieve a macro-F1 score of up to 0.69.

Arman Cohan, Franck Dernoncourt, Doo Soon Kim et al.

Neural abstractive summarization models have led to promising results in summarizing relatively short documents. We propose the first model for abstractive summarization of single, longer-form documents (e.g., research papers). Our approach consists of a new hierarchical encoder that models the discourse structure of a document, and an attentive discourse-aware decoder to generate the summary. Empirical results on two large-scale datasets of scientific papers show that our model significantly outperforms state-of-the-art models.

Sean MacAvaney, Luca Soldaini, Arman Cohan et al.

SemEval 2018 Task 7 focuses on relation ex- traction and classification in scientific literature. In this work, we present our tree-based LSTM network for this shared task. Our approach placed 9th (of 28) for subtask 1.1 (relation classification), and 5th (of 20) for subtask 1.2 (relation classification with noisy entities). We also provide an ablation study of features included as input to the network.

Andrew Yates, Arman Cohan, Nazli Goharian

Users suffering from mental health conditions often turn to online resources for support, including specialized online support communities or general communities such as Twitter and Reddit. In this work, we present a neural framework for supporting and studying users in both types of communities. We propose methods for identifying posts in support communities that may indicate a risk of self-harm, and demonstrate that our approach outperforms strong previously proposed methods for identifying such posts. Self-harm is closely related to depression, which makes identifying depressed users on general forums a crucial related task. We introduce a large-scale general forum dataset ("RSDD") consisting of users with self-reported depression diagnoses matched with control users. We show how our method can be applied to effectively identify depressed users from their use of language alone. We demonstrate that our method outperforms strong baselines on this general forum dataset.

Arman Cohan, Allan Fong, Raj Ratwani et al.

Preventable medical errors are estimated to be among the leading causes of injury and death in the United States. To prevent such errors, healthcare systems have implemented patient safety and incident reporting systems. These systems enable clinicians to report unsafe conditions and cases where patients have been harmed due to errors in medical care. These reports are narratives in natural language and while they provide detailed information about the situation, it is non-trivial to perform large scale analysis for identifying common causes of errors and harm to the patients. In this work, we present a method based on attentive convolutional and recurrent networks for identifying harm events in patient care and categorize the harm based on its severity level. We demonstrate that our methods can significantly improve the performance over existing methods in identifying harm in clinical care.

Arman Cohan, Nazli Goharian

The rapid growth of scientific literature has made it difficult for the researchers to quickly learn about the developments in their respective fields. Scientific document summarization addresses this challenge by providing summaries of the important contributions of scientific papers. We present a framework for scientific summarization which takes advantage of the citations and the scientific discourse structure. Citation texts often lack the evidence and context to support the content of the cited paper and are even sometimes inaccurate. We first address the problem of inaccuracy of the citation texts by finding the relevant context from the cited paper. We propose three approaches for contextualizing citations which are based on query reformulation, word embeddings, and supervised learning. We then train a model to identify the discourse facets for each citation. We finally propose a method for summarizing scientific papers by leveraging the faceted citations and their corresponding contexts. We evaluate our proposed method on two scientific summarization datasets in the biomedical and computational linguistics domains. Extensive evaluation results show that our methods can improve over the state of the art by large margins.

Arman Cohan, Nazli Goharian

Citation texts are sometimes not very informative or in some cases inaccurate by themselves; they need the appropriate context from the referenced paper to reflect its exact contributions. To address this problem, we propose an unsupervised model that uses distributed representation of words as well as domain knowledge to extract the appropriate context from the reference paper. Evaluation results show the effectiveness of our model by significantly outperforming the state-of-the-art. We furthermore demonstrate how an effective contextualization method results in improving citation-based summarization of the scientific articles.

Arman Cohan, Nazli Goharian

We propose a summarization approach for scientific articles which takes advantage of citation-context and the document discourse model. While citations have been previously used in generating scientific summaries, they lack the related context from the referenced article and therefore do not accurately reflect the article's content. Our method overcomes the problem of inconsistency between the citation summary and the article's content by providing context for each citation. We also leverage the inherent scientific article's discourse for producing better summaries. We show that our proposed method effectively improves over existing summarization approaches (greater than 30% improvement over the best performing baseline) in terms of \textsc{Rouge} scores on TAC2014 scientific summarization dataset. While the dataset we use for evaluation is in the biomedical domain, most of our approaches are general and therefore adaptable to other domains.

Arman Cohan, Allan Fong, Nazli Goharian et al.

Medical errors are leading causes of death in the US and as such, prevention of these errors is paramount to promoting health care. Patient Safety Event reports are narratives describing potential adverse events to the patients and are important in identifying and preventing medical errors. We present a neural network architecture for identifying the type of safety events which is the first step in understanding these narratives. Our proposed model is based on a soft neural attention model to improve the effectiveness of encoding long sequences. Empirical results on two large-scale real-world datasets of patient safety reports demonstrate the effectiveness of our method with significant improvements over existing methods.

Arman Cohan, Sydney Young, Andrew Yates et al.

Mental health forums are online communities where people express their issues and seek help from moderators and other users. In such forums, there are often posts with severe content indicating that the user is in acute distress and there is a risk of attempted self-harm. Moderators need to respond to these severe posts in a timely manner to prevent potential self-harm. However, the large volume of daily posted content makes it difficult for the moderators to locate and respond to these critical posts. We present a framework for triaging user content into four severity categories which are defined based on indications of self-harm ideation. Our models are based on a feature-rich classification framework which includes lexical, psycholinguistic, contextual and topic modeling features. Our approaches improve the state of the art in triaging the content severity in mental health forums by large margins (up to 17% improvement over the F-1 scores). Using the proposed model, we analyze the mental state of users and we show that overall, long-term users of the forum demonstrate a decreased severity of risk over time. Our analysis on the interaction of the moderators with the users further indicates that without an automatic way to identify critical content, it is indeed challenging for the moderators to provide timely response to the users in need.

Arman Cohan, Nazli Goharian

Evaluation of text summarization approaches have been mostly based on metrics that measure similarities of system generated summaries with a set of human written gold-standard summaries. The most widely used metric in summarization evaluation has been the ROUGE family. ROUGE solely relies on lexical overlaps between the terms and phrases in the sentences; therefore, in cases of terminology variations and paraphrasing, ROUGE is not as effective. Scientific article summarization is one such case that is different from general domain summarization (e.g. newswire data). We provide an extensive analysis of ROUGE's effectiveness as an evaluation metric for scientific summarization; we show that, contrary to the common belief, ROUGE is not much reliable in evaluating scientific summaries. We furthermore show how different variants of ROUGE result in very different correlations with the manual Pyramid scores. Finally, we propose an alternative metric for summarization evaluation which is based on the content relevance between a system generated summary and the corresponding human written summaries. We call our metric SERA (Summarization Evaluation by Relevance Analysis). Unlike ROUGE, SERA consistently achieves high correlations with manual scores which shows its effectiveness in evaluation of scientific article summarization.