Tingting Jiang

Ruohua Shi, Qiufan Pang, Lei Ma et al.

Electron microscopy (EM) imaging offers unparalleled resolution for analyzing neural tissues, crucial for uncovering the intricacies of synaptic connections and neural processes fundamental to understanding behavioral mechanisms. Recently, the foundation models have demonstrated impressive performance across numerous natural and medical image segmentation tasks. However, applying these foundation models to EM segmentation faces significant challenges due to domain disparities. This paper presents ShapeMamba-EM, a specialized fine-tuning method for 3D EM segmentation, which employs adapters for long-range dependency modeling and an encoder for local shape description within the original foundation model. This approach effectively addresses the unique volumetric and morphological complexities of EM data. Tested over a wide range of EM images, covering five segmentation tasks and 10 datasets, ShapeMamba-EM outperforms existing methods, establishing a new standard in EM image segmentation and enhancing the understanding of neural tissue architecture.

Fangqiu Yi, Hongyu Wen, Tingting Jiang

Algorithms for the action segmentation task typically use temporal models to predict what action is occurring at each frame for a minute-long daily activity. Recent studies have shown the potential of Transformer in modeling the relations among elements in sequential data. However, there are several major concerns when directly applying the Transformer to the action segmentation task, such as the lack of inductive biases with small training sets, the deficit in processing long input sequence, and the limitation of the decoder architecture to utilize temporal relations among multiple action segments to refine the initial predictions. To address these concerns, we design an efficient Transformer-based model for action segmentation task, named ASFormer, with three distinctive characteristics: (i) We explicitly bring in the local connectivity inductive priors because of the high locality of features. It constrains the hypothesis space within a reliable scope, and is beneficial for the action segmentation task to learn a proper target function with small training sets. (ii) We apply a pre-defined hierarchical representation pattern that efficiently handles long input sequences. (iii) We carefully design the decoder to refine the initial predictions from the encoder. Extensive experiments on three public datasets demonstrate that effectiveness of our methods. Code is available at \url{https://github.com/ChinaYi/ASFormer}.

Fangqiu Yi, Tingting Jiang

Surgical phase recognition is of particular interest to computer assisted surgery systems, in which the goal is to predict what phase is occurring at each frame for a surgery video. Networks with multi-stage architecture have been widely applied in many computer vision tasks with rich patterns, where a predictor stage first outputs initial predictions and an additional refinement stage operates on the initial predictions to perform further refinement. Existing works show that surgical video contents are well ordered and contain rich temporal patterns, making the multi-stage architecture well suited for the surgical phase recognition task. However, we observe that when simply applying the multi-stage architecture to the surgical phase recognition task, the end-to-end training manner will make the refinement ability fall short of its wishes. To address the problem, we propose a new non end-to-end training strategy and explore different designs of multi-stage architecture for surgical phase recognition task. For the non end-to-end training strategy, the refinement stage is trained separately with proposed two types of disturbed sequences. Meanwhile, we evaluate three different choices of refinement models to show that our analysis and solution are robust to the choices of specific multi-stage models. We conduct experiments on two public benchmarks, the M2CAI16 Workflow Challenge, and the Cholec80 dataset. Results show that multi-stage architecture trained with our strategy largely boosts the performance of the current state-of-the-art single-stage model. Code is available at \url{https://github.com/ChinaYi/casual_tcn}.

Dingquan Li, Tingting Jiang, Ming Jiang

Video quality assessment (VQA) is an important problem in computer vision. The videos in computer vision applications are usually captured in the wild. We focus on automatically assessing the quality of in-the-wild videos, which is a challenging problem due to the absence of reference videos, the complexity of distortions, and the diversity of video contents. Moreover, the video contents and distortions among existing datasets are quite different, which leads to poor performance of data-driven methods in the cross-dataset evaluation setting. To improve the performance of quality assessment models, we borrow intuitions from human perception, specifically, content dependency and temporal-memory effects of human visual system. To face the cross-dataset evaluation challenge, we explore a mixed datasets training strategy for training a single VQA model with multiple datasets. The proposed unified framework explicitly includes three stages: relative quality assessor, nonlinear mapping, and dataset-specific perceptual scale alignment, to jointly predict relative quality, perceptual quality, and subjective quality. Experiments are conducted on four publicly available datasets for VQA in the wild, i.e., LIVE-VQC, LIVE-Qualcomm, KoNViD-1k, and CVD2014. The experimental results verify the effectiveness of the mixed datasets training strategy and prove the superior performance of the unified model in comparison with the state-of-the-art models. For reproducible research, we make the PyTorch implementation of our method available at https://github.com/lidq92/MDTVSFA.

Chenxi Yang, Yujia Liu, Dingquan Li et al.

No-Reference Image Quality Assessment (NR-IQA) aims to predict image quality scores consistent with human perception without relying on pristine reference images, serving as a crucial component in various visual tasks. Ensuring the robustness of NR-IQA methods is vital for reliable comparisons of different image processing techniques and consistent user experiences in recommendations. The attack methods for NR-IQA provide a powerful instrument to test the robustness of NR-IQA. However, current attack methods of NR-IQA heavily rely on the gradient of the NR-IQA model, leading to limitations when the gradient information is unavailable. In this paper, we present a pioneering query-based black box attack against NR-IQA methods. We propose the concept of score boundary and leverage an adaptive iterative approach with multiple score boundaries. Meanwhile, the initial attack directions are also designed to leverage the characteristics of the Human Visual System (HVS). Experiments show our method outperforms all compared state-of-the-art attack methods and is far ahead of previous black-box methods. The effective NR-IQA model DBCNN suffers a Spearman's rank-order correlation coefficient (SROCC) decline of 0.6381 attacked by our method, revealing the vulnerability of NR-IQA models to black-box attacks. The proposed attack method also provides a potent tool for further exploration into NR-IQA robustness.

Zhuowei Li, Zihao Liu, Zhiqiang Hu et al.

Medical image segmentation has been widely recognized as a pivot procedure for clinical diagnosis, analysis, and treatment planning. However, the laborious and expensive annotation process lags down the speed of further advances. Contrastive learning-based weight pre-training provides an alternative by leveraging unlabeled data to learn a good representation. In this paper, we investigate how contrastive learning benefits the general supervised medical segmentation tasks. To this end, patch-dragsaw contrastive regularization (PDCR) is proposed to perform patch-level tugging and repulsing with the extent controlled by a continuous affinity score. And a new structure dubbed uncertainty-aware feature selection block (UAFS) is designed to perform the feature selection process, which can handle the learning target shift caused by minority features with high uncertainty. By plugging the proposed 2 modules into the existing segmentation architecture, we achieve state-of-the-art results across 8 public datasets from 6 domains. Newly designed modules further decrease the amount of training data to a quarter while achieving comparable, if not better, performances. From this perspective, we take the opposite direction of the original self/un-supervised contrastive learning by further excavating information contained within the label.

Daochang Liu, Qiyue Li, Tingting Jiang et al.

Surgical skills have a great influence on surgical safety and patients' well-being. Traditional assessment of surgical skills involves strenuous manual efforts, which lacks efficiency and repeatability. Therefore, we attempt to automatically predict how well the surgery is performed using the surgical video. In this paper, a unified multi-path framework for automatic surgical skill assessment is proposed, which takes care of multiple composing aspects of surgical skills, including surgical tool usage, intraoperative event pattern, and other skill proxies. The dependency relationships among these different aspects are specially modeled by a path dependency module in the framework. We conduct extensive experiments on the JIGSAWS dataset of simulated surgical tasks, and a new clinical dataset of real laparoscopic surgeries. The proposed framework achieves promising results on both datasets, with the state-of-the-art on the simulated dataset advanced from 0.71 Spearman's correlation to 0.80. It is also shown that combining multiple skill aspects yields better performance than relying on a single aspect.

Ruohua Shi, Wenyao Wang, Zhixuan Li et al.

Computer vision technology is widely used in biological and medical data analysis and understanding. However, there are still two major bottlenecks in the field of cell membrane segmentation, which seriously hinder further research: lack of sufficient high-quality data and lack of suitable evaluation criteria. In order to solve these two problems, this paper first proposes an Ultra-high Resolution Image Segmentation dataset for the Cell membrane, called U-RISC, the largest annotated Electron Microscopy (EM) dataset for the Cell membrane with multiple iterative annotations and uncompressed high-resolution raw data. During the analysis process of the U-RISC, we found that the current popular segmentation evaluation criteria are inconsistent with human perception. This interesting phenomenon is confirmed by a subjective experiment involving twenty people. Furthermore, to resolve this inconsistency, we propose a new evaluation criterion called Perceptual Hausdorff Distance (PHD) to measure the quality of cell membrane segmentation results. Detailed performance comparison and discussion of classic segmentation methods along with two iterative manual annotation results under existing evaluation criteria and PHD is given.

Daochang Liu, Yuhui Wei, Tingting Jiang et al.

Surgical instrument segmentation is a key component in developing context-aware operating rooms. Existing works on this task heavily rely on the supervision of a large amount of labeled data, which involve laborious and expensive human efforts. In contrast, a more affordable unsupervised approach is developed in this paper. To train our model, we first generate anchors as pseudo labels for instruments and background tissues respectively by fusing coarse handcrafted cues. Then a semantic diffusion loss is proposed to resolve the ambiguity in the generated anchors via the feature correlation between adjacent video frames. In the experiments on the binary instrument segmentation task of the 2017 MICCAI EndoVis Robotic Instrument Segmentation Challenge dataset, the proposed method achieves 0.71 IoU and 0.81 Dice score without using a single manual annotation, which is promising to show the potential of unsupervised learning for surgical tool segmentation.

Tobias Ross, Annika Reinke, Peter M. Full et al.

Intraoperative tracking of laparoscopic instruments is often a prerequisite for computer and robotic-assisted interventions. While numerous methods for detecting, segmenting and tracking of medical instruments based on endoscopic video images have been proposed in the literature, key limitations remain to be addressed: Firstly, robustness, that is, the reliable performance of state-of-the-art methods when run on challenging images (e.g. in the presence of blood, smoke or motion artifacts). Secondly, generalization; algorithms trained for a specific intervention in a specific hospital should generalize to other interventions or institutions. In an effort to promote solutions for these limitations, we organized the Robust Medical Instrument Segmentation (ROBUST-MIS) challenge as an international benchmarking competition with a specific focus on the robustness and generalization capabilities of algorithms. For the first time in the field of endoscopic image processing, our challenge included a task on binary segmentation and also addressed multi-instance detection and segmentation. The challenge was based on a surgical data set comprising 10,040 annotated images acquired from a total of 30 surgical procedures from three different types of surgery. The validation of the competing methods for the three tasks (binary segmentation, multi-instance detection and multi-instance segmentation) was performed in three different stages with an increasing domain gap between the training and the test data. The results confirm the initial hypothesis, namely that algorithm performance degrades with an increasing domain gap. While the average detection and segmentation quality of the best-performing algorithms is high, future research should concentrate on detection and segmentation of small, crossing, moving and transparent instrument(s) (parts).

Wen Heng, Shuchang Zhou, Tingting Jiang

Adversarial attacks find perturbations that can fool models into misclassifying images. Previous works had successes in generating noisy/edge-rich adversarial perturbations, at the cost of degradation of image quality. Such perturbations, even when they are small in scale, are usually easily spottable by human vision. In contrast, we propose Harmonic Adversar- ial Attack Methods (HAAM), that generates edge-free perturbations by using harmonic functions. The property of edge-free guarantees that the generated adversarial images can still preserve visual quality, even when perturbations are of large magnitudes. Experiments also show that adversaries generated by HAAM often have higher rates of success when transferring between models. In addition, we find harmonic perturbations can simulate natural phenomena like natural lighting and shadows. It would then be possible to help find corner cases for given models, as a first step to improving them.

Daochang Liu, Tingting Jiang

Recognition of surgical gesture is crucial for surgical skill assessment and efficient surgery training. Prior works on this task are based on either variant graphical models such as HMMs and CRFs, or deep learning models such as Recurrent Neural Networks and Temporal Convolutional Networks. Most of the current approaches usually suffer from over-segmentation and therefore low segment-level edit scores. In contrast, we present an essentially different methodology by modeling the task as a sequential decision-making process. An intelligent agent is trained using reinforcement learning with hierarchical features from a deep model. Temporal consistency is integrated into our action design and reward mechanism to reduce over-segmentation errors. Experiments on JIGSAWS dataset demonstrate that the proposed method performs better than state-of-the-art methods in terms of the edit score and on par in frame-wise accuracy. Our code will be released later.