Roderick Murray-Smith

Luis Oala, Marco Aversa, Gabriel Nobis et al.

Camera images are ubiquitous in machine learning research. They also play a central role in the delivery of important services spanning medicine and environmental surveying. However, the application of machine learning models in these domains has been limited because of robustness concerns. A primary failure mode are performance drops due to differences between the training and deployment data. While there are methods to prospectively validate the robustness of machine learning models to such dataset drifts, existing approaches do not account for explicit models of the primary object of interest: the data. This limits our ability to study and understand the relationship between data generation and downstream machine learning model performance in a physically accurate manner. In this study, we demonstrate how to overcome this limitation by pairing traditional machine learning with physical optics to obtain explicit and differentiable data models. We demonstrate how such data models can be constructed for image data and used to control downstream machine learning model performance related to dataset drift. The findings are distilled into three applications. First, drift synthesis enables the controlled generation of physically faithful drift test cases to power model selection and targeted generalization. Second, the gradient connection between machine learning task model and data model allows advanced, precise tolerancing of task model sensitivity to changes in the data generation. These drift forensics can be used to precisely specify the acceptable data environments in which a task model may be run. Third, drift optimization opens up the possibility to create drifts that can help the task model learn better faster, effectively optimizing the data generating process itself. A guide to access the open code and datasets is available at https://github.com/aiaudit-org/raw2logit.

Qianying Liu, Chaitanya Kaul, Jun Wang et al.

For medical image semantic segmentation (MISS), Vision Transformers have emerged as strong alternatives to convolutional neural networks thanks to their inherent ability to capture long-range correlations. However, existing research uses off-the-shelf vision Transformer blocks based on linear projections and feature processing which lack spatial and local context to refine organ boundaries. Furthermore, Transformers do not generalize well on small medical imaging datasets and rely on large-scale pre-training due to limited inductive biases. To address these problems, we demonstrate the design of a compact and accurate Transformer network for MISS, CS-Unet, which introduces convolutions in a multi-stage design for hierarchically enhancing spatial and local modeling ability of Transformers. This is mainly achieved by our well-designed Convolutional Swin Transformer (CST) block which merges convolutions with Multi-Head Self-Attention and Feed-Forward Networks for providing inherent localized spatial context and inductive biases. Experiments demonstrate CS-Unet without pre-training outperforms other counterparts by large margins on multi-organ and cardiac datasets with fewer parameters and achieves state-of-the-art performance. Our code is available at Github.

Marco Aversa, Gabriel Nobis, Miriam Hägele et al.

We present DiffInfinite, a hierarchical diffusion model that generates arbitrarily large histological images while preserving long-range correlation structural information. Our approach first generates synthetic segmentation masks, subsequently used as conditions for the high-fidelity generative diffusion process. The proposed sampling method can be scaled up to any desired image size while only requiring small patches for fast training. Moreover, it can be parallelized more efficiently than previous large-content generation methods while avoiding tiling artifacts. The training leverages classifier-free guidance to augment a small, sparsely annotated dataset with unlabelled data. Our method alleviates unique challenges in histopathological imaging practice: large-scale information, costly manual annotation, and protective data handling. The biological plausibility of DiffInfinite data is evaluated in a survey by ten experienced pathologists as well as a downstream classification and segmentation task. Samples from the model score strongly on anti-copying metrics which is relevant for the protection of patient data.

Gabriel Nobis, Maximilian Springenberg, Marco Aversa et al.

We introduce the first continuous-time score-based generative model that leverages fractional diffusion processes for its underlying dynamics. Although diffusion models have excelled at capturing data distributions, they still suffer from various limitations such as slow convergence, mode-collapse on imbalanced data, and lack of diversity. These issues are partially linked to the use of light-tailed Brownian motion (BM) with independent increments. In this paper, we replace BM with an approximation of its non-Markovian counterpart, fractional Brownian motion (fBM), characterized by correlated increments and Hurst index $H \in (0,1)$, where $H=0.5$ recovers the classical BM. To ensure tractable inference and learning, we employ a recently popularized Markov approximation of fBM (MA-fBM) and derive its reverse-time model, resulting in generative fractional diffusion models (GFDM). We characterize the forward dynamics using a continuous reparameterization trick and propose augmented score matching to efficiently learn the score function, which is partly known in closed form, at minimal added cost. The ability to drive our diffusion model via MA-fBM offers flexibility and control. $H \leq 0.5$ enters the regime of rough paths whereas $H>0.5$ regularizes diffusion paths and invokes long-term memory. The Markov approximation allows added control by varying the number of Markov processes linearly combined to approximate fBM. Our evaluations on real image datasets demonstrate that GFDM achieves greater pixel-wise diversity and enhanced image quality, as indicated by a lower FID, offering a promising alternative to traditional diffusion models

Athanasios Tragakis, Chaitanya Kaul, Roderick Murray-Smith et al.

We propose a novel transformer model, capable of segmenting medical images of varying modalities. Challenges posed by the fine grained nature of medical image analysis mean that the adaptation of the transformer for their analysis is still at nascent stages. The overwhelming success of the UNet lay in its ability to appreciate the fine-grained nature of the segmentation task, an ability which existing transformer based models do not currently posses. To address this shortcoming, we propose The Fully Convolutional Transformer (FCT), which builds on the proven ability of Convolutional Neural Networks to learn effective image representations, and combines them with the ability of Transformers to effectively capture long-term dependencies in its inputs. The FCT is the first fully convolutional Transformer model in medical imaging literature. It processes its input in two stages, where first, it learns to extract long range semantic dependencies from the input image, and then learns to capture hierarchical global attributes from the features. FCT is compact, accurate and robust. Our results show that it outperforms all existing transformer architectures by large margins across multiple medical image segmentation datasets of varying data modalities without the need for any pre-training. FCT outperforms its immediate competitor on the ACDC dataset by 1.3%, on the Synapse dataset by 4.4%, on the Spleen dataset by 1.2% and on ISIC 2017 dataset by 1.1% on the dice metric, with up to five times fewer parameters. Our code, environments and models will be available via GitHub.

Shameem A Puthiya Parambath, Christos Anagnostopoulos, Roderick Murray-Smith

We propose an algorithm for next query recommendation in interactive data exploration settings, like knowledge discovery for information gathering. The state-of-the-art query recommendation algorithms are based on sequence-to-sequence learning approaches that exploit historical interaction data. Due to the supervision involved in the learning process, such approaches fail to adapt to immediate user feedback. We propose to augment the transformer-based causal language models for query recommendations to adapt to the immediate user feedback using multi-armed bandit (MAB) framework. We conduct a large-scale experimental study using log files from a popular online literature discovery service and demonstrate that our algorithm improves the per-round regret substantially, with respect to the state-of-the-art transformer-based query recommendation models, which do not make use of immediate user feedback. Our data model and source code are available at https://github.com/shampp/exp3_ss

Kevin Mitchell, Khaled Kassem, Chaitanya Kaul et al.

For widespread adoption, public security and surveillance systems must be accurate, portable, compact, and real-time, without impeding the privacy of the individuals being observed. Current systems broadly fall into two categories -- image-based which are accurate, but lack privacy, and RF signal-based, which preserve privacy but lack portability, compactness and accuracy. Our paper proposes mmSense, an end-to-end portable miniaturised real-time system that can accurately detect the presence of concealed metallic objects on persons in a discrete, privacy-preserving modality. mmSense features millimeter wave radar technology, provided by Google's Soli sensor for its data acquisition, and TransDope, our real-time neural network, capable of processing a single radar data frame in 19 ms. mmSense achieves high recognition rates on a diverse set of challenging scenes while running on standard laptop hardware, demonstrating a significant advancement towards creating portable, cost-effective real-time radar based surveillance systems.

Joshua Mitton, Simon Peter Mekhail, Miles Padgett et al.

We develop a new type of model for solving the task of inverting the transmission effects of multi-mode optical fibres through the construction of an $\mathrm{SO}^{+}(2,1)$-equivariant neural network. This model takes advantage of the of the azimuthal correlations known to exist in fibre speckle patterns and naturally accounts for the difference in spatial arrangement between input and speckle patterns. In addition, we use a second post-processing network to remove circular artifacts, fill gaps, and sharpen the images, which is required due to the nature of optical fibre transmission. This two stage approach allows for the inspection of the predicted images produced by the more robust physically motivated equivariant model, which could be useful in a safety-critical application, or by the output of both models, which produces high quality images. Further, this model can scale to previously unachievable resolutions of imaging with multi-mode optical fibres and is demonstrated on $256 \times 256$ pixel images. This is a result of improving the trainable parameter requirement from $\mathcal{O}(N^4)$ to $\mathcal{O}(m)$, where $N$ is pixel size and $m$ is number of fibre modes. Finally, this model generalises to new images, outside of the set of training data classes, better than previous models.

Athanasios Tragakis, Marco Aversa, Chaitanya Kaul et al.

In this work, we introduce Pixelsmith, a zero-shot text-to-image generative framework to sample images at higher resolutions with a single GPU. We are the first to show that it is possible to scale the output of a pre-trained diffusion model by a factor of 1000, opening the road for gigapixel image generation at no additional cost. Our cascading method uses the image generated at the lowest resolution as a baseline to sample at higher resolutions. For the guidance, we introduce the Slider, a tunable mechanism that fuses the overall structure contained in the first-generated image with enhanced fine details. At each inference step, we denoise patches rather than the entire latent space, minimizing memory demands such that a single GPU can handle the process, regardless of the image's resolution. Our experimental results show that Pixelsmith not only achieves higher quality and diversity compared to existing techniques, but also reduces sampling time and artifacts. The code for our work is available at https://github.com/Thanos-DB/Pixelsmith.

Adalberto Claudio Quiros, Nicolas Coudray, Anna Yeaton et al.

Deep learning based analysis of histopathology images shows promise in advancing the understanding of tumor progression, tumor micro-environment, and their underpinning biological processes. So far, these approaches have focused on extracting information associated with annotations. In this work, we ask how much information can be learned from the tissue architecture itself. We present an adversarial learning model to extract feature representations of cancer tissue, without the need for manual annotations. We show that these representations are able to identify a variety of morphological characteristics across three cancer types: Breast, colon, and lung. This is supported by 1) the separation of morphologic characteristics in the latent space; 2) the ability to classify tissue type with logistic regression using latent representations, with an AUC of 0.97 and 85% accuracy, comparable to supervised deep models; 3) the ability to predict the presence of tumor in Whole Slide Images (WSIs) using multiple instance learning (MIL), achieving an AUC of 0.98 and 94% accuracy. Our results show that our model captures distinct phenotypic characteristics of real tissue samples, paving the way for further understanding of tumor progression and tumor micro-environment, and ultimately refining histopathological classification for diagnosis and treatment. The code and pretrained models are available at: https://github.com/AdalbertoCq/Adversarial-learning-of-cancer-tissue-representations

Adalberto Claudio Quiros, Roderick Murray-Smith, Ke Yuan

Histopathological images of tumors contain abundant information about how tumors grow and how they interact with their micro-environment. Better understanding of tissue phenotypes in these images could reveal novel determinants of pathological processes underlying cancer, and in turn improve diagnosis and treatment options. Advances of Deep learning makes it ideal to achieve those goals, however, its application is limited by the cost of high quality labels from patients data. Unsupervised learning, in particular, deep generative models with representation learning properties provides an alternative path to further understand cancer tissue phenotypes, capturing tissue morphologies. In this paper, we develop a framework which allows GANs to capture key tissue features and uses these characteristics to give structure to its latent space. To this end, we trained our model on two different datasets, an H&E colorectal cancer tissue from the National Center for Tumor diseases (NCT) and an H&E breast cancer tissue from the Netherlands Cancer Institute (NKI) and Vancouver General Hospital (VGH). Composed of 86 slide images and 576 TMAs respectively. We show that our model generates high quality images, with a FID of 16.65 (breast cancer) and 32.05 (colorectal cancer). We further assess the quality of the images with cancer tissue characteristics (e.g. count of cancer, lymphocytes, or stromal cells), using quantitative information to calculate the FID and showing consistent performance of 9.86. Additionally, the latent space of our model shows an interpretable structure and allows semantic vector operations that translate into tissue feature transformations. Furthermore, ratings from two expert pathologists found no significant difference between our generated tissue images from real ones. The code, images, and pretrained models are available at https://github.com/AdalbertoCq/Pathology-GAN

Roderick Murray-Smith, John H. Williamson, Sebastian Stein

Active Inference is a closed-loop computational theoretical basis for understanding behaviour, based on agents with internal probabilistic generative models that encode their beliefs about how hidden states in their environment cause their sensations. We review Active Inference and how it could be applied to model the human-computer interaction loop. Active Inference provides a coherent framework for managing generative models of humans, their environments, sensors and interface components. It informs off-line design and supports real-time, online adaptation. It provides model-based explanations for behaviours observed in HCI, and new tools to measure important concepts such as agency and engagement. We discuss how Active Inference offers a new basis for a theory of interaction in HCI, tools for design of modern, complex sensor-based systems, and integration of artificial intelligence technologies, enabling it to cope with diversity in human users and contexts. We discuss the practical challenges in implementing such Active Inference-based systems.

Athanasios Tragakis, Qianying Liu, Chaitanya Kaul et al.

We propose a novel transformer-style architecture called Global-Local Filter Network (GLFNet) for medical image segmentation and demonstrate its state-of-the-art performance. We replace the self-attention mechanism with a combination of global-local filter blocks to optimize model efficiency. The global filters extract features from the whole feature map whereas the local filters are being adaptively created as 4x4 patches of the same feature map and add restricted scale information. In particular, the feature extraction takes place in the frequency domain rather than the commonly used spatial (image) domain to facilitate faster computations. The fusion of information from both spatial and frequency spaces creates an efficient model with regards to complexity, required data and performance. We test GLFNet on three benchmark datasets achieving state-of-the-art performance on all of them while being almost twice as efficient in terms of GFLOP operations.

Valentin Charvet, Sebastian Stein, Roderick Murray-Smith

Controllers trained with Reinforcement Learning tend to be very specialized and thus generalize poorly when their testing environment differs from their training one. We propose a Model-Based approach to increase generalization where both world model and policy are trained in a dimensionless state-action space. To do so, we introduce the Dimensionless Markov Decision Process ($Π$-MDP): an extension of Contextual-MDPs in which state and action spaces are non-dimensionalized with the Buckingham-$Π$ theorem. This procedure induces policies that are equivariant with respect to changes in the context of the underlying dynamics. We provide a generic framework for this approach and apply it to a model-based policy search algorithm using Gaussian Process models. We demonstrate the applicability of our method on simulated actuated pendulum and cartpole systems, where policies trained on a single environment are robust to shifts in the distribution of the context.

Songpei Xu, Xuri Ge, Chaitanya Kaul et al.

We present a novel Hand-pose Embedding Interactive System (HpEIS) as a virtual sensor, which maps users' flexible hand poses to a two-dimensional visual space using a Variational Autoencoder (VAE) trained on a variety of hand poses. HpEIS enables visually interpretable and guidable support for user explorations in multimedia collections, using only a camera as an external hand pose acquisition device. We identify general usability issues associated with system stability and smoothing requirements through pilot experiments with expert and inexperienced users. We then design stability and smoothing improvements, including hand-pose data augmentation, an anti-jitter regularisation term added to loss function, stabilising post-processing for movement turning points and smoothing post-processing based on One Euro Filters. In target selection experiments (n=12), we evaluate HpEIS by measures of task completion time and the final distance to target points, with and without the gesture guidance window condition. Experimental responses indicate that HpEIS provides users with a learnable, flexible, stable and smooth mid-air hand movement interaction experience.

Markus Klar, Sebastian Stein, Fraser Paterson et al.

We explore the use of Active Inference (AIF) as a computational user model for spatial pointing, a key problem in Human-Computer Interaction (HCI). We present an AIF agent with continuous state, action, and observation spaces, performing one-dimensional mouse pointing and clicking. We use a simple underlying dynamic system to model the mouse cursor dynamics with realistic perceptual delay. In contrast to previous optimal feedback control-based models, the agent's actions are selected by minimizing Expected Free Energy, solely based on preference distributions over percepts, such as observing clicking a button correctly. Our results show that the agent creates plausible pointing movements and clicks when the cursor is over the target, with similar end-point variance to human users. In contrast to other models of pointing, we incorporate fully probabilistic, predictive delay compensation into the agent. The agent shows distinct behaviour for differing target difficulties without the need to retune system parameters, as done in other approaches. We discuss the simulation results and emphasize the challenges in identifying the correct configuration of an AIF agent interacting with continuous systems.

Catherine F. Higham, Paul Henderson, Roderick Murray-Smith

Measurement of a physical quantity such as light intensity is an integral part of many reconstruction and decision scenarios but can be costly in terms of acquisition time, invasion of or damage to the environment and storage. Data minimisation and compliance with data protection laws is also an important consideration. Where there are a range of measurements that can be made, some may be more informative and compliant with the overall measurement objective than others. We develop an active sequential inference algorithm that uses the low dimensional representational latent space from a variational autoencoder (VAE) to choose which measurement to make next. Our aim is to recover high dimensional data by making as few measurements as possible. We adapt the VAE encoder to map partial data measurements on to the latent space of the complete data. The algorithm draws samples from this latent space and uses the VAE decoder to generate data conditional on the partial measurements. Estimated measurements are made on the generated data and fed back through the partial VAE encoder to the latent space where they can be evaluated prior to making a measurement. Starting from no measurements and a normal prior on the latent space, we consider alternative strategies for choosing the next measurement and updating the predictive posterior prior for the next step. The algorithm is illustrated using the Fashion MNIST dataset and a novel convolutional Hadamard pattern measurement basis. We see that useful patterns are chosen within 10 steps, leading to the convergence of the guiding generative images. Compared with using stochastic variational inference to infer the parameters of the posterior distribution for each generated data point individually, the partial VAE framework can efficiently process batches of generated data and obtains superior results with minimal measurements.

Athanasios Tragakis, Chaitanya Kaul, Kevin J. Mitchell et al.

Accurate depth estimation is crucial for many fields, including robotics, navigation, and medical imaging. However, conventional depth sensors often produce low-resolution (LR) depth maps, making detailed scene perception challenging. To address this, enhancing LR depth maps to high-resolution (HR) ones has become essential, guided by HR-structured inputs like RGB or grayscale images. We propose a novel sensor fusion methodology for guided depth super-resolution (GDSR), a technique that combines LR depth maps with HR images to estimate detailed HR depth maps. Our key contribution is the Incremental guided attention fusion (IGAF) module, which effectively learns to fuse features from RGB images and LR depth maps, producing accurate HR depth maps. Using IGAF, we build a robust super-resolution model and evaluate it on multiple benchmark datasets. Our model achieves state-of-the-art results compared to all baseline models on the NYU v2 dataset for $\times 4$, $\times 8$, and $\times 16$ upsampling. It also outperforms all baselines in a zero-shot setting on the Middlebury, Lu, and RGB-D-D datasets. Code, environments, and models are available on GitHub.

Joshua Mitton, Chaitanya Kaul, Roderick Murray-Smith

We develop a rotation equivariant model for generating 3D hand meshes from 2D RGB images. This guarantees that as the input image of a hand is rotated the generated mesh undergoes a corresponding rotation. Furthermore, this removes undesirable deformations in the meshes often generated by methods without rotation equivariance. By building a rotation equivariant model, through considering symmetries in the problem, we reduce the need for training on very large datasets to achieve good mesh reconstruction. The encoder takes images defined on $\mathbb{Z}^{2}$ and maps these to latent functions defined on the group $C_{8}$. We introduce a novel vector mapping function to map the function defined on $C_{8}$ to a latent point cloud space defined on the group $\mathrm{SO}(2)$. Further, we introduce a 3D projection function that learns a 3D function from the $\mathrm{SO}(2)$ latent space. Finally, we use an $\mathrm{SO}(3)$ equivariant decoder to ensure rotation equivariance. Our rotation equivariant model outperforms state-of-the-art methods on a real-world dataset and we demonstrate that it accurately captures the shape and pose in the generated meshes under rotation of the input hand.

Joshua Mitton, Roderick Murray-Smith

In this work we develop a new method, named Sub-graph Permutation Equivariant Networks (SPEN), which provides a framework for building graph neural networks that operate on sub-graphs, while using a base update function that is permutation equivariant, that are equivariant to a novel choice of automorphism group. Message passing neural networks have been shown to be limited in their expressive power and recent approaches to over come this either lack scalability or require structural information to be encoded into the feature space. The general framework presented here overcomes the scalability issues associated with global permutation equivariance by operating more locally on sub-graphs. In addition, through operating on sub-graphs the expressive power of higher-dimensional global permutation equivariant networks is improved; this is due to fact that two non-distinguishable graphs often contain distinguishable sub-graphs. Furthermore, the proposed framework only requires a choice of $k$-hops for creating ego-network sub-graphs and a choice of representation space to be used for each layer, which makes the method easily applicable across a range of graph based domains. We experimentally validate the method on a range of graph benchmark classification tasks, demonstrating statistically indistinguishable results from the state-of-the-art on six out of seven benchmarks. Further, we demonstrate that the use of local update functions offers a significant improvement in GPU memory over global methods.

Chaitanya Kaul, Joshua Mitton, Hang Dai et al.

We present CpT: Convolutional point Transformer - a novel deep learning architecture for dealing with the unstructured nature of 3D point cloud data. CpT is an improvement over existing attention-based Convolutions Neural Networks as well as previous 3D point cloud processing transformers. It achieves this feat due to its effectiveness in creating a novel and robust attention-based point set embedding through a convolutional projection layer crafted for processing dynamically local point set neighbourhoods. The resultant point set embedding is robust to the permutations of the input points. Our novel CpT block builds over local neighbourhoods of points obtained via a dynamic graph computation at each layer of the networks' structure. It is fully differentiable and can be stacked just like convolutional layers to learn global properties of the points. We evaluate our model on standard benchmark datasets such as ModelNet40, ShapeNet Part Segmentation, and the S3DIS 3D indoor scene semantic segmentation dataset to show that our model can serve as an effective backbone for various point cloud processing tasks when compared to the existing state-of-the-art approaches.

Valentin Charvet, Bjørn Sand Jensen, Roderick Murray-Smith

Model-based Reinforcement Learning estimates the true environment through a world model in order to approximate the optimal policy. This family of algorithms usually benefits from better sample efficiency than their model-free counterparts. We investigate whether controllers learned in such a way are robust and able to generalize under small perturbations of the environment. Our work is inspired by the PILCO algorithm, a method for probabilistic policy search. We show that enforcing a lower bound to the likelihood noise in the Gaussian Process dynamics model regularizes the policy updates and yields more robust controllers. We demonstrate the empirical benefits of our method in a simulation benchmark.

Joshua Mitton, Roderick Murray-Smith

Deforestation has become a significant contributing factor to climate change and, due to this, both classifying the drivers and predicting segmentation maps of deforestation has attracted significant interest. In this work, we develop a rotation equivariant convolutional neural network model to predict the drivers and generate segmentation maps of deforestation events from Landsat 8 satellite images. This outperforms previous methods in classifying the drivers and predicting the segmentation map of deforestation, offering a 9% improvement in classification accuracy and a 7% improvement in segmentation map accuracy. In addition, this method predicts stable segmentation maps under rotation of the input image, which ensures that predicted regions of deforestation are not dependent upon the rotational orientation of the satellite.

Roderick Murray-Smith, John H. Williamson, Andrew Ramsay et al.

We outline the role of forward and inverse modelling approaches in the design of human--computer interaction systems. Causal, forward models tend to be easier to specify and simulate, but HCI requires solutions of the inverse problem. We infer finger 3D position $(x,y,z)$ and pose (pitch and yaw) on a mobile device using capacitive sensors which can sense the finger up to 5cm above the screen. We use machine learning to develop data-driven models to infer position, pose and sensor readings, based on training data from: 1. data generated by robots, 2. data from electrostatic simulators 3. human-generated data. Machine learned emulation is used to accelerate the electrostatic simulation performance by a factor of millions. We combine a Conditional Variational Autoencoder with domain expertise/models experimentally collected data. We compare forward and inverse model approaches to direct inference of finger pose. The combination gives the most accurate reported results on inferring 3D position and pose with a capacitive sensor on a mobile device.

Shameem A. Puthiya Parambath, Christos Anagnostopoulos, Roderick Murray-Smith et al.

We consider the query recommendation problem in closed loop interactive learning settings like online information gathering and exploratory analytics. The problem can be naturally modelled using the Multi-Armed Bandits (MAB) framework with countably many arms. The standard MAB algorithms for countably many arms begin with selecting a random set of candidate arms and then applying standard MAB algorithms, e.g., UCB, on this candidate set downstream. We show that such a selection strategy often results in higher cumulative regret and to this end, we propose a selection strategy based on the maximum utility of the arms. We show that in tasks like online information gathering, where sequential query recommendations are employed, the sequences of queries are correlated and the number of potentially optimal queries can be reduced to a manageable size by selecting queries with maximum utility with respect to the currently executing query. Our experimental results using a recent real online literature discovery service log file demonstrate that the proposed arm selection strategy improves the cumulative regret substantially with respect to the state-of-the-art baseline algorithms. % and commonly used random selection strategy for a variety of contextual multi-armed bandit algorithms. Our data model and source code are available at ~\url{https://anonymous.4open.science/r/0e5ad6b7-ac02-4577-9212-c9d505d3dbdb/}.

Sean MacAvaney, Craig Macdonald, Roderick Murray-Smith et al.

Search result diversification is a beneficial approach to overcome under-specified queries, such as those that are ambiguous or multi-faceted. Existing approaches often rely on massive query logs and interaction data to generate a variety of possible query intents, which then can be used to re-rank documents. However, relying on user interaction data is problematic because one first needs a massive user base to build a sufficient log; public query logs are insufficient on their own. Given the recent success of causal language models (such as the Text-To-Text Transformer (T5) model) at text generation tasks, we explore the capacity of these models to generate potential query intents. We find that to encourage diversity in the generated queries, it is beneficial to adapt the model by including a new Distributional Causal Language Modeling (DCLM) objective during fine-tuning and a representation replacement during inference. Across six standard evaluation benchmarks, we find that our method (which we call IntenT5) improves search result diversity and attains (and sometimes exceeds) the diversity obtained when using query suggestions based on a proprietary query log. Our analysis shows that our approach is most effective for multi-faceted queries and is able to generalize effectively to queries that were unseen in training data.

Marija Jegorova, Chaitanya Kaul, Charlie Mayor et al.

Leakage of data from publicly available Machine Learning (ML) models is an area of growing significance as commercial and government applications of ML can draw on multiple sources of data, potentially including users' and clients' sensitive data. We provide a comprehensive survey of contemporary advances on several fronts, covering involuntary data leakage which is natural to ML models, potential malevolent leakage which is caused by privacy attacks, and currently available defence mechanisms. We focus on inference-time leakage, as the most likely scenario for publicly available models. We first discuss what leakage is in the context of different data, tasks, and model architectures. We then propose a taxonomy across involuntary and malevolent leakage, available defences, followed by the currently available assessment metrics and applications. We conclude with outstanding challenges and open questions, outlining some promising directions for future research.

Joshua Mitton, Hans M. Senn, Klaas Wynne et al.

We propose a combination of a variational autoencoder and a transformer based model which fully utilises graph convolutional and graph pooling layers to operate directly on graphs. The transformer model implements a novel node encoding layer, replacing the position encoding typically used in transformers, to create a transformer with no position information that operates on graphs, encoding adjacent node properties into the edge generation process. The proposed model builds on graph generative work operating on graphs with edge features, creating a model that offers improved scalability with the number of nodes in a graph. In addition, our model is capable of learning a disentangled, interpretable latent space that represents graph properties through a mapping between latent variables and graph properties. In experiments we chose a benchmark task of molecular generation, given the importance of both generated node and edge features. Using the QM9 dataset we demonstrate that our model performs strongly across the task of generating valid, unique and novel molecules. Finally, we demonstrate that the model is interpretable by generating molecules controlled by molecular properties, and we then analyse and visualise the learned latent representation.

J. Alberto Álvarez Martín, Henrik Gollee, Jörg Müller et al.

We present Intermittent Control (IC) models as a candidate framework for modelling human input movements in Human--Computer Interaction (HCI). IC differs from continuous control in that users are not assumed to use feedback to adjust their movements continuously, but only when the difference between the observed pointer position and predicted pointer positions become large. We use a parameter optimisation approach to identify the parameters of an intermittent controller from experimental data, where users performed one-dimensional mouse movements in a reciprocal pointing task. Compared to previous published work with continuous control models, based on the Kullback-Leibler divergence from the experimental observations, IC is better able to generatively reproduce the distinctive dynamical features and variability of the pointing task across participants and over repeated tasks. IC is compatible with current physiological and psychological theory and provides insight into the source of variability in HCI tasks.

Francesco Tonolini, Pablo G. Moreno, Andreas Damianou et al.

We propose a new probabilistic method for unsupervised recovery of corrupted data. Given a large ensemble of degraded samples, our method recovers accurate posteriors of clean values, allowing the exploration of the manifold of possible reconstructed data and hence characterising the underlying uncertainty. In this setting, direct application of classical variational methods often gives rise to collapsed densities that do not adequately explore the solution space. Instead, we derive our novel reduced entropy condition approximate inference method that results in rich posteriors. We test our model in a data recovery task under the common setting of missing values and noise, demonstrating superior performance to existing variational methods for imputation and de-noising with different real data sets. We further show higher classification accuracy after imputation, proving the advantage of propagating uncertainty to downstream tasks with our model.

Adalberto Claudio Quiros, Roderick Murray-Smith, Ke Yuan

Application of deep learning in digital pathology shows promise on improving disease diagnosis and understanding. We present a deep generative model that learns to simulate high-fidelity cancer tissue images while mapping the real images onto an interpretable low dimensional latent space. The key to the model is an encoder trained by a previously developed generative adversarial network, PathologyGAN. We study the latent space using 249K images from two breast cancer cohorts. We find that the latent space encodes morphological characteristics of tissues (e.g. patterns of cancer, lymphocytes, and stromal cells). In addition, the latent space reveals distinctly enriched clusters of tissue architectures in the high-risk patient group.

Chaitanya Kaul, Nick Pears, Hang Dai et al.

We propose a new residual block for convolutional neural networks and demonstrate its state-of-the-art performance in medical image segmentation. We combine attention mechanisms with group convolutions to create our group attention mechanism, which forms the fundamental building block of our network, FocusNet++. We employ a hybrid loss based on balanced cross entropy, Tversky loss and the adaptive logarithmic loss to enhance the performance along with fast convergence. Our results show that FocusNet++ achieves state-of-the-art results across various benchmark metrics for the ISIC 2018 melanoma segmentation and the cell nuclei segmentation datasets with fewer parameters and FLOPs.

Alex Turpin, Gabriella Musarra, Valentin Kapitany et al.

Traditional paradigms for imaging rely on the use of a spatial structure, either in the detector (pixels arrays) or in the illumination (patterned light). Removal of the spatial structure in the detector or illumination, i.e., imaging with just a single-point sensor, would require solving a very strongly ill-posed inverse retrieval problem that to date has not been solved. Here, we demonstrate a data-driven approach in which full 3D information is obtained with just a single-point, single-photon avalanche diode that records the arrival time of photons reflected from a scene that is illuminated with short pulses of light. Imaging with single-point time-of-flight (temporal) data opens new routes in terms of speed, size, and functionality. As an example, we show how the training based on an optical time-of-flight camera enables a compact radio-frequency impulse radio detection and ranging transceiver to provide 3D images.

Chaitanya Kaul, Nick Pears, Hang Dai et al.

Loss functions are error metrics that quantify the difference between a prediction and its corresponding ground truth. Fundamentally, they define a functional landscape for traversal by gradient descent. Although numerous loss functions have been proposed to date in order to handle various machine learning problems, little attention has been given to enhancing these functions to better traverse the loss landscape. In this paper, we simultaneously and significantly mitigate two prominent problems in medical image segmentation namely: i) class imbalance between foreground and background pixels and ii) poor loss function convergence. To this end, we propose an adaptive logarithmic loss function. We compare this loss function with the existing state-of-the-art on the ISIC 2018 dataset, the nuclei segmentation dataset as well as the DRIVE retinal vessel segmentation dataset. We measure the performance of our methodology on benchmark metrics and demonstrate state-of-the-art performance. More generally, we show that our system can be used as a framework for better training of deep neural networks.

Hunter Gabbard, Chris Messenger, Ik Siong Heng et al.

Gravitational wave (GW) detection is now commonplace and as the sensitivity of the global network of GW detectors improves, we will observe $\mathcal{O}(100)$s of transient GW events per year. The current methods used to estimate their source parameters employ optimally sensitive but computationally costly Bayesian inference approaches where typical analyses have taken between 6 hours and 5 days. For binary neutron star and neutron star black hole systems prompt counterpart electromagnetic (EM) signatures are expected on timescales of 1 second -- 1 minute and the current fastest method for alerting EM follow-up observers, can provide estimates in $\mathcal{O}(1)$ minute, on a limited range of key source parameters. Here we show that a conditional variational autoencoder pre-trained on binary black hole signals can return Bayesian posterior probability estimates. The training procedure need only be performed once for a given prior parameter space and the resulting trained machine can then generate samples describing the posterior distribution $\sim 6$ orders of magnitude faster than existing techniques.

Francesco Tonolini, Jack Radford, Alex Turpin et al.

Machine learning methods for computational imaging require uncertainty estimation to be reliable in real settings. While Bayesian models offer a computationally tractable way of recovering uncertainty, they need large data volumes to be trained, which in imaging applications implicates prohibitively expensive collections with specific imaging instruments. This paper introduces a novel framework to train variational inference for inverse problems exploiting in combination few experimentally collected data, domain expertise and existing image data sets. In such a way, Bayesian machine learning models can solve imaging inverse problems with minimal data collection efforts. Extensive simulated experiments show the advantages of the proposed framework. The approach is then applied to two real experimental optics settings: holographic image reconstruction and imaging through highly scattering media. In both settings, state of the art reconstructions are achieved with little collection of training data.

Piergiorgio Caramazza, Alessandro Boccolini, Daniel Buschek et al.

Light scattered from multiple surfaces can be used to retrieve information of hidden environments. However, full three-dimensional retrieval of an object hidden from view by a wall has only been achieved with scanning systems and requires intensive computational processing of the retrieved data. Here we use a non-scanning, single-photon single-pixel detector in combination with an artificial neural network: this allows us to locate the position and to also simultaneously provide the actual identity of a hidden person, chosen from a database of people (N=3). Artificial neural networks applied to specific computational imaging problems can therefore enable novel imaging capabilities with hugely simplified hardware and processing times