Sebastian Nowak

h-index27
2papers

2 Papers

29.0CYMar 25Code
Secure On-Premise Deployment of Open-Weights Large Language Models in Radiology: An Isolation-First Architecture with Prospective Pilot Evaluation

Sebastian Nowak, Jann-Frederick Laß, Narine Mesropyan et al.

Purpose: To design, implement, evaluate, and report on the regulatory requirements of a self-hosted LLM infrastructure for radiology adhering to the principle of least privilege, emphasizing technical feasibility, network isolation, and clinical utility. Materials and Methods: The isolation-first, containerized LLM inference stack relies on strict network segmentation, host-enforced egress filtering, and active isolation monitoring preventing unauthorized external connectivity. An accompanying deployment package provides automated isolation and hardening tests. The system served the open-weights DeepSeek-R1 model via vLLM. In a one-week pilot phase, 22 residents and radiologists were free to use 10 predefined prompt-templates whenever they considered them useful in daily work. Afterward, they rated clinical utility and system stability on an 0-10 Likert scale and reported observed critical errors in model output. Results: The applied institutional governance pathway achieved approval from clinic management, compliance, data protection and information security officers for processing unanonymized PHI. The system was rated stable and user friendly during the pilot. Source text-anchored tasks, such as report corrections or simplifications, and radiology guideline recommendations received the highest utility ratings, whereas open-ended conclusion generation based on findings resulted in the highest frequency of critical errors, such as clinically relevant hallucinations or omissions. Conclusion: The proposed isolation-first on-premise architecture enabled overcoming regulatory borders, showed promising clinical utility in text-anchored tasks and is the current base to serve open-weights LLMs as an official service of a German University Hospital with over 10,000 employees. The deployment package were made publicly available (https://github.com/ukbonn/ukb-gpt).

CVOct 28, 2024
Informed Deep Abstaining Classifier: Investigating noise-robust training for diagnostic decision support systems

Helen Schneider, Sebastian Nowak, Aditya Parikh et al.

Image-based diagnostic decision support systems (DDSS) utilizing deep learning have the potential to optimize clinical workflows. However, developing DDSS requires extensive datasets with expert annotations and is therefore costly. Leveraging report contents from radiological data bases with Natural Language Processing to annotate the corresponding image data promises to replace labor-intensive manual annotation. As mining "real world" databases can introduce label noise, noise-robust training losses are of great interest. However, current noise-robust losses do not consider noise estimations that can for example be derived based on the performance of the automatic label generator used. In this study, we expand the noise-robust Deep Abstaining Classifier (DAC) loss to an Informed Deep Abstaining Classifier (IDAC) loss by incorporating noise level estimations during training. Our findings demonstrate that IDAC enhances the noise robustness compared to DAC and several state-of-the-art loss functions. The results are obtained on various simulated noise levels using a public chest X-ray data set. These findings are reproduced on an in-house noisy data set, where labels were extracted from the clinical systems of the University Hospital Bonn by a text-based transformer. The IDAC can therefore be a valuable tool for researchers, companies or clinics aiming to develop accurate and reliable DDSS from routine clinical data.