Yuanyuan Wei

Yuanyuan Wei, Roger Tam, Xiaoying Tang

Recent applications of deep convolutional neural networks in medical imaging raise concerns about their interpretability. While most explainable deep learning applications use post hoc methods (such as GradCAM) to generate feature attribution maps, there is a new type of case-based reasoning models, namely ProtoPNet and its variants, which identify prototypes during training and compare input image patches with those prototypes. We propose the first medical prototype network (MProtoNet) to extend ProtoPNet to brain tumor classification with 3D multi-parametric magnetic resonance imaging (mpMRI) data. To address different requirements between 2D natural images and 3D mpMRIs especially in terms of localizing attention regions, a new attention module with soft masking and online-CAM loss is introduced. Soft masking helps sharpen attention maps, while online-CAM loss directly utilizes image-level labels when training the attention module. MProtoNet achieves statistically significant improvements in interpretability metrics of both correctness and localization coherence (with a best activation precision of $0.713\pm0.058$) without human-annotated labels during training, when compared with GradCAM and several ProtoPNet variants. The source code is available at https://github.com/aywi/mprotonet.

Yuanyuan Wei, Julian Jang-Jaccard, Wen Xu et al.

Anomaly detection for indoor air quality (IAQ) data has become an important area of research as the quality of air is closely related to human health and well-being. However, traditional statistics and shallow machine learning-based approaches in anomaly detection in the IAQ area could not detect anomalies involving the observation of correlations across several data points (i.e., often referred to as long-term dependences). We propose a hybrid deep learning model that combines LSTM with Autoencoder for anomaly detection tasks in IAQ to address this issue. In our approach, the LSTM network is comprised of multiple LSTM cells that work with each other to learn the long-term dependences of the data in a time-series sequence. Autoencoder identifies the optimal threshold based on the reconstruction loss rates evaluated on every data across all time-series sequences. Our experimental results, based on the Dunedin CO2 time-series dataset obtained through a real-world deployment of the schools in New Zealand, demonstrate a very high and robust accuracy rate (99.50%) that outperforms other similar models.

Yuanyuan Wei, Julian Jang-Jaccard, Fariza Sabrina et al.

A Distributed Denial-of-service (DDoS) attack is a malicious attempt to disrupt the regular traffic of a targeted server, service, or network by sending a flood of traffic to overwhelm the target or its surrounding infrastructure. As technology improves, new attacks have been developed by hackers. Traditional statistical and shallow machine learning techniques can detect superficial anomalies based on shallow data and feature selection, however, these approaches cannot detect unseen DDoS attacks. In this context, we propose a reconstruction-based anomaly detection model named LSTM-Autoencoder (LSTM-AE) which combines two deep learning-based models for detecting DDoS attack anomalies. The proposed structure of long short-term memory (LSTM) networks provides units that work with each other to learn the long short-term correlation of data within a time series sequence. Autoencoders are used to identify the optimal threshold based on the reconstruction error rates evaluated on each sample across all time-series sequences. As such, a combination model LSTM-AE can not only learn delicate sub-pattern differences in attacks and benign traffic flows, but also minimize reconstructed benign traffic to obtain a lower range reconstruction error, with attacks presenting a larger reconstruction error. In this research, we trained and evaluated our proposed LSTM-AE model on reflection-based DDoS attacks (DNS, LDAP, and SNMP). The results of our experiments demonstrate that our method performs better than other state-of-the-art methods, especially for LDAP attacks, with an accuracy of over 99.

Shufeng Kong, Zijie Wang, Nuan Cui et al.

Automated interpretation of medical images demands robust modeling of complex visual-semantic relationships while addressing annotation scarcity, label imbalance, and clinical plausibility constraints. We introduce MIRNet (Medical Image Reasoner Network), a novel framework that integrates self-supervised pre-training with constrained graph-based reasoning. Tongue image diagnosis is a particularly challenging domain that requires fine-grained visual and semantic understanding. Our approach leverages self-supervised masked autoencoder (MAE) to learn transferable visual representations from unlabeled data; employs graph attention networks (GAT) to model label correlations through expert-defined structured graphs; enforces clinical priors via constraint-aware optimization using KL divergence and regularization losses; and mitigates imbalance using asymmetric loss (ASL) and boosting ensembles. To address annotation scarcity, we also introduce TongueAtlas-4K, a comprehensive expert-curated benchmark comprising 4,000 images annotated with 22 diagnostic labels--representing the largest public dataset in tongue analysis. Validation shows our method achieves state-of-the-art performance. While optimized for tongue diagnosis, the framework readily generalizes to broader diagnostic medical imaging tasks.

Yimeng Zhang, Harold Rockwell, Sicheng Dai et al.

Feedforward CNN models have proven themselves in recent years as state-of-the-art models for predicting single-neuron responses to natural images in early visual cortical neurons. In this paper, we extend these models with recurrent convolutional layers, reflecting the well-known massive recurrence in the cortex, and show robust increases in predictive performance over feedforward models across thousands of hyperparameter combinations in three datasets of macaque V1 and V2 single-neuron responses. We propose the recurrent circuit can be conceptualized as a form of ensemble computing, with each iteration generating more effective feedforward paths of various path lengths to allow a combination of solutions in the final approximation. The statistics of the paths in the ensemble provide insights to the differential performance increases among our recurrent models. We also assess whether the recurrent circuits learned for neural response prediction can be related to cortical circuits. We find that the hidden units in the recurrent circuits of the appropriate models, when trained on long-duration wide-field image presentations, exhibit similar temporal response dynamics and classical contextual modulations as observed in V1 neurons. This work provides insights to the computational rationale of recurrent circuits and suggests that neural response prediction could be useful for characterizing the recurrent neural circuits in the visual cortex.