Lei Tang

h-index15
2papers
481citations

2 Papers

2.0CVAug 25, 2024
PAM: A Propagation-Based Model for Segmenting Any 3D Objects across Multi-Modal Medical Images

Zifan Chen, Xinyu Nan, Jiazheng Li et al.

Volumetric segmentation is important in medical imaging, but current methods face challenges like requiring lots of manual annotations and being tailored to specific tasks, which limits their versatility. General segmentation models used for natural images don't perform well with the unique features of medical images. There's a strong need for an adaptable approach that can effectively handle different 3D medical structures and imaging modalities. In this study, we present PAM (Propagating Anything Model), a segmentation approach that uses a 2D prompt, like a bounding box or sketch, to create a complete 3D segmentation of medical image volumes. PAM works by modeling relationships between slices, maintaining information flow across the 3D structure. It combines a CNN-based UNet for processing within slices and a Transformer-based attention module for propagating information between slices, leading to better generalizability across various imaging modalities. PAM significantly outperformed existing models like MedSAM and SegVol, with an average improvement of over 18.1% in dice similarity coefficient (DSC) across 44 medical datasets and various object types. It also showed stable performance despite prompt deviations and different propagation setups, and faster inference speeds compared to other models. PAM's one-view prompt design made it more efficient, reducing interaction time by about 63.6% compared to two-view prompts. Thanks to its focus on structural relationships, PAM handled unseen and complex objects well, showing a unique ability to generalize to new situations. PAM represents an advancement in medical image segmentation, effectively reducing the need for extensive manual work and specialized training. Its adaptability makes it a promising tool for more automated and reliable analysis in clinical settings.

3.0IVMay 29, 2023
propnet: Propagating 2D Annotation to 3D Segmentation for Gastric Tumors on CT Scans

Zifan Chen, Jiazheng Li, Jie Zhao et al.

**Background:** Accurate 3D CT scan segmentation of gastric tumors is pivotal for diagnosis and treatment. The challenges lie in the irregular shapes, blurred boundaries of tumors, and the inefficiency of existing methods. **Purpose:** We conducted a study to introduce a model, utilizing human-guided knowledge and unique modules, to address the challenges of 3D tumor segmentation. **Methods:** We developed the PropNet framework, propagating radiologists' knowledge from 2D annotations to the entire 3D space. This model consists of a proposing stage for coarse segmentation and a refining stage for improved segmentation, using two-way branches for enhanced performance and an up-down strategy for efficiency. **Results:** With 98 patient scans for training and 30 for validation, our method achieves a significant agreement with manual annotation (Dice of 0.803) and improves efficiency. The performance is comparable in different scenarios and with various radiologists' annotations (Dice between 0.785 and 0.803). Moreover, the model shows improved prognostic prediction performance (C-index of 0.620 vs. 0.576) on an independent validation set of 42 patients with advanced gastric cancer. **Conclusions:** Our model generates accurate tumor segmentation efficiently and stably, improving prognostic performance and reducing high-throughput image reading workload. This model can accelerate the quantitative analysis of gastric tumors and enhance downstream task performance.