Dan Chen

Wei Chen, Chen Li, Dan Chen et al.

Self-supervised pre-training has become the priory choice to establish reliable neural networks for automated recognition of massive biomedical microscopy images, which are routinely annotation-free, without semantics, and without guarantee of quality. Note that this paradigm is still at its infancy and limited by closely related open issues: 1) how to learn robust representations in an unsupervised manner from unlabelled biomedical microscopy images of low diversity in samples? and 2) how to obtain the most significant representations demanded by a high-quality segmentation? Aiming at these issues, this study proposes a knowledge-based learning framework (TOWER) towards enhanced recognition of biomedical microscopy images, which works in three phases by synergizing contrastive learning and generative learning methods: 1) Sample Space Diversification: Reconstructive proxy tasks have been enabled to embed a priori knowledge with context highlighted to diversify the expanded sample space; 2) Enhanced Representation Learning: Informative noise-contrastive estimation loss regularizes the encoder to enhance representation learning of annotation-free images; 3) Correlated Optimization: Optimization operations in pre-training the encoder and the decoder have been correlated via image restoration from proxy tasks, targeting the need for semantic segmentation. Experiments have been conducted on public datasets of biomedical microscopy images against the state-of-the-art counterparts (e.g., SimCLR and BYOL), and results demonstrate that: TOWER statistically excels in all self-supervised methods, achieving a Dice improvement of 1.38 percentage points over SimCLR. TOWER also has potential in multi-modality medical image analysis and enables label-efficient semi-supervised learning, e.g., reducing the annotation cost by up to 99% in pathological classification.

Baomin Wang, Geng Hu, Dan Chen et al.

Accurately and quickly binuclear cell (BC) detection plays a significant role in predicting the risk of leukemia and other malignant tumors. However, manual microscopy counting is time-consuming and lacks objectivity. Moreover, with the limitation of staining quality and diversity of morphology features in BC microscopy whole slide images (WSIs), traditional image processing approaches are helpless. To overcome this challenge, we propose a two-stage detection method inspired by the structure prior of BC based on deep learning, which cascades to implement BCs coarse detection at the WSI-level and fine-grained classification in patch-level. The coarse detection network is a multi-task detection framework based on circular bounding boxes for cells detection, and central key points for nucleus detection. The circle representation reduces the degrees of freedom, mitigates the effect of surrounding impurities compared to usual rectangular boxes and can be rotation invariant in WSI. Detecting key points in the nucleus can assist network perception and be used for unsupervised color layer segmentation in later fine-grained classification. The fine classification network consists of a background region suppression module based on color layer mask supervision and a key region selection module based on a transformer due to its global modeling capability. Additionally, an unsupervised and unpaired cytoplasm generator network is firstly proposed to expand the long-tailed distribution dataset. Finally, experiments are performed on BC multicenter datasets. The proposed BC fine detection method outperforms other benchmarks in almost all the evaluation criteria, providing clarification and support for tasks such as cancer screenings.

Jingfan Zhang, Yi Zhao, Dan Chen et al.

Low-rank adaptation (LoRA) and its mixture-of-experts (MOE) variants are highly effective parameter-efficient fine-tuning (PEFT) methods. However, they introduce significant latency in multi-tenant settings due to the LoRA modules and MOE routers added to multiple linear modules in the Transformer layer. To address this issue, we propose Mixture of Low-Rank Adaptation (MiLoRA), a novel and efficient LoRA variant. MiLoRA differs from previous MOE-style LoRA methods by considering each LoRA module as an expert and employing a prompt-aware routing mechanism. This mechanism calculates expert routing results once before generating the first new token and reuses these results for subsequent tokens, reducing latency. Extensive experiments and analysis on commonsense reasoning tasks, math reasoning tasks, and widely used LLM evaluation benchmarks demonstrate that MiLoRA consistently outperforms strong PEFT baselines with comparable tunable parameter budgets. Additionally, MiLoRA significantly reduces latency in multi-tenant settings compared to previous LoRA-based methods.

Jie Gao, Jiayi Zhang, Dan Chen

While Generative AI (GenAI) rapidly integrated into higher education, existing research has primarily focused on regulating student use. As a result, student perspectives on faculty adoption of GenAI remained unexplored. In this study, we analyzed survey responses from 156 undergraduate and graduate students to examine their attitudes toward both student and faculty use of GenAI. We classified students into four groups based on their attitudes, including GenAI Optimists, Student Support Group, Faculty Support Group, and Non-supporters. Findings show that 37% of participants do not support GenAI use by either students or faculty, while 31% support GenAI use in both contexts. We also conducted thematic analysis to understand participants' concerns on faculty GenAI usage. Results revealed that (1) a majority of students (79%) questioned the validity and reliability of GenAI-generated responses, and (2) 37% of students feared that faculty overreliance on GenAI created a "futile cycle" that might reduce faculty critical thinking. Our findings showed that students expressed concerns about GenAI use by faculty in teaching and grading contexts, with pedagogical concerns being most prominent. These findings informed the future use of GenAI in teaching and learning in higher education.