Sent2Span: Span Detection for PICO Extraction in the Biomedical Text without Span AnnotationsShifeng Liu, Yifang Sun, Bing Li et al.
The rapid growth in published clinical trials makes it difficult to maintain up-to-date systematic reviews, which requires finding all relevant trials. This leads to policy and practice decisions based on out-of-date, incomplete, and biased subsets of available clinical evidence. Extracting and then normalising Population, Intervention, Comparator, and Outcome (PICO) information from clinical trial articles may be an effective way to automatically assign trials to systematic reviews and avoid searching and screening - the two most time-consuming systematic review processes. We propose and test a novel approach to PICO span detection. The major difference between our proposed method and previous approaches comes from detecting spans without needing annotated span data and using only crowdsourced sentence-level annotations. Experiments on two datasets show that PICO span detection results achieve much higher results for recall when compared to fully supervised methods with PICO sentence detection at least as good as human annotations. By removing the reliance on expert annotations for span detection, this work could be used in human-machine pipeline for turning low-quality crowdsourced, and sentence-level PICO annotations into structured information that can be used to quickly assign trials to relevant systematic reviews.
1.5CLDec 3, 2019
HAMNER: Headword Amplified Multi-span Distantly Supervised Method for Domain Specific Named Entity RecognitionShifeng Liu, Yifang Sun, Bing Li et al.
To tackle Named Entity Recognition (NER) tasks, supervised methods need to obtain sufficient cleanly annotated data, which is labor and time consuming. On the contrary, distantly supervised methods acquire automatically annotated data using dictionaries to alleviate this requirement. Unfortunately, dictionaries hinder the effectiveness of distantly supervised methods for NER due to its limited coverage, especially in specific domains. In this paper, we aim at the limitations of the dictionary usage and mention boundary detection. We generalize the distant supervision by extending the dictionary with headword based non-exact matching. We apply a function to better weight the matched entity mentions. We propose a span-level model, which classifies all the possible spans then infers the selected spans with a proposed dynamic programming algorithm. Experiments on all three benchmark datasets demonstrate that our method outperforms previous state-of-the-art distantly supervised methods.
1.2SIMar 1, 2016
On Tie Strength Augmented Social Correlation for Inferring Preference of Mobile Telco UsersShifeng Liu, Zheng Hu, Sujit Dey et al.
For mobile telecom operators, it is critical to build preference profiles of their customers and connected users, which can help operators make better marketing strategies, and provide more personalized services. With the deployment of deep packet inspection (DPI) in telecom networks, it is possible for the telco operators to obtain user online preference. However, DPI has its limitations and user preference derived only from DPI faces sparsity and cold start problems. To better infer the user preference, social correlation in telco users network derived from Call Detailed Records (CDRs) with regard to online preference is investigated. Though widely verified in several online social networks, social correlation between online preference of users in mobile telco networks, where the CDRs derived relationship are of less social properties and user mobile internet surfing activities are not visible to neighbourhood, has not been explored at a large scale. Based on a real world telecom dataset including CDRs and preference of more than $550K$ users for several months, we verified that correlation does exist between online preference in such \textit{ambiguous} social network. Furthermore, we found that the stronger ties that users build, the more similarity between their preference may have. After defining the preference inferring task as a Top-$K$ recommendation problem, we incorporated Matrix Factorization Collaborative Filtering model with social correlation and tie strength based on call patterns to generate Top-$K$ preferred categories for users. The proposed Tie Strength Augmented Social Recommendation (TSASoRec) model takes data sparsity and cold start user problems into account, considering both the recorded and missing recorded category entries. The experiment on real dataset shows the proposed model can better infer user preference, especially for cold start users.