Yan Xia

Nicolás Gaggion, Benjamin A. Matheson, Yan Xia et al.

Cardiovascular magnetic resonance imaging is emerging as a crucial tool to examine cardiac morphology and function. Essential to this endeavour are anatomical 3D surface and volumetric meshes derived from CMR images, which facilitate computational anatomy studies, biomarker discovery, and in-silico simulations. Traditional approaches typically follow complex multi-step pipelines, first segmenting images and then reconstructing meshes, making them time-consuming and prone to error propagation. In response, we introduce HybridVNet, a novel architecture for direct image-to-mesh extraction seamlessly integrating standard convolutional neural networks with graph convolutions, which we prove can efficiently handle surface and volumetric meshes by encoding them as graph structures. To further enhance accuracy, we propose a multi-view HybridVNet architecture which processes both long axis and short axis CMR, showing that it can increase the performance of cardiac MR mesh generation. Our model combines traditional convolutional networks with variational graph generative models, deep supervision and mesh-specific regularisation. Experiments on a comprehensive dataset from the UK Biobank confirm the potential of HybridVNet to significantly advance cardiac imaging and computational cardiology by efficiently generating high-fidelity meshes from CMR images. Multi-view HybridVNet outperforms the state-of-the-art, achieving improvements of up to $\sim$27\% reduction in Mean Contour Distance (from 1.86 mm to 1.35 mm for the LV Myocardium), up to $\sim$18\% improvement in Hausdorff distance (from 4.74 mm to 3.89mm, for the LV Endocardium), and up to $\sim$8\% in Dice Coefficient (from 0.78 to 0.84, for the LV Myocardium), highlighting its superior accuracy.

Xiaolin Huang, Yan Xia, Lei Shi et al.

When a measurement falls outside the quantization or measurable range, it becomes saturated and cannot be used in classical reconstruction methods. For example, in C-arm angiography systems, which provide projection radiography, fluoroscopy, digital subtraction angiography, and are widely used for medical diagnoses and interventions, the limited dynamic range of C-arm flat detectors leads to overexposure in some projections during an acquisition, such as imaging relatively thin body parts (e.g., the knee). Aiming at overexposure correction for computed tomography (CT) reconstruction, we in this paper propose a mixed one-bit compressive sensing (M1bit-CS) to acquire information from both regular and saturated measurements. This method is inspired by the recent progress on one-bit compressive sensing, which deals with only sign observations. Its successful applications imply that information carried by saturated measurements is useful to improve recovery quality. For the proposed M1bit-CS model, alternating direction methods of multipliers is developed and an iterative saturation detection scheme is established. Then we evaluate M1bit-CS on one-dimensional signal recovery tasks. In some experiments, the performance of the proposed algorithms on mixed measurements is almost the same as recovery on unsaturated ones with the same amount of measurements. Finally, we apply the proposed method to overexposure correction for CT reconstruction on a phantom and a simulated clinical image. The results are promising, as the typical streaking artifacts and capping artifacts introduced by saturated projection data are effectively reduced, yielding significant error reduction compared with existing algorithms based on extrapolation.