Yang Young Lu

Winston Chen, Yifan Jiang, William Stafford Noble et al.

Machine learning (ML) models are powerful tools for detecting complex patterns within data, yet their "black box" nature limits their interpretability, hindering their use in critical domains like healthcare and finance. To address this challenge, interpretable ML methods have been developed to explain how features influence model predictions. However, these methods often focus on univariate feature importance, overlooking the complex interactions between features that ML models are capable of capturing. Recognizing this limitation, recent efforts have aimed to extend these methods to discover feature interactions, but existing approaches struggle with robustness and error control, especially under data perturbations. In this study, we introduce Diamond, a novel method for trustworthy feature interaction discovery. Diamond uniquely integrates the model-X knockoffs framework to control the false discovery rate (FDR), ensuring that the proportion of falsely discovered interactions remains low. A key innovation in Diamond is its non-additivity distillation procedure, which refines existing interaction importance measures to distill non-additive interaction effects, ensuring that FDR control is maintained. This approach addresses the limitations of off-the-shelf interaction measures, which, when used naively, can lead to inaccurate discoveries. Diamond's applicability spans a wide range of ML models, including deep neural networks, transformer models, tree-based models, and factorization-based models. Our empirical evaluations on both simulated and real datasets across various biomedical studies demonstrate Diamond's utility in enabling more reliable data-driven scientific discoveries. This method represents a significant step forward in the deployment of ML models for scientific innovation and hypothesis generation.

Wentao Zhang, Yang Young Lu, Yuntian Deng

Traditional neural network training typically follows fixed, predefined optimization recipes, lacking the flexibility to dynamically respond to instabilities or emerging training issues. In this paper, we introduce Interactive Training, an open-source framework that enables real-time, feedback-driven intervention during neural network training by human experts or automated AI agents. At its core, Interactive Training uses a control server to mediate communication between users or agents and the ongoing training process, allowing users to dynamically adjust optimizer hyperparameters, training data, and model checkpoints. Through three case studies, we demonstrate that Interactive Training achieves superior training stability, reduced sensitivity to initial hyperparameters, and improved adaptability to evolving user needs, paving the way toward a future training paradigm where AI agents autonomously monitor training logs, proactively resolve instabilities, and optimize training dynamics.

Shriram M Sathiyanarayanan, Xinyue Hao, Shihao Hou et al.

The success of the machine learning field has reliably depended on training on large datasets. While effective, this trend comes at an extraordinary cost. This is due to two deeply intertwined factors: the size of models and the size of datasets. While promising research efforts focus on reducing the size of models, the other half of the equation remains fairly mysterious. Indeed, it is surprising that the standard approach to training remains to iterate over and over, uniformly sampling the training dataset. In this paper we explore a series of alternative training paradigms that leverage insights from hard-data-mining and dropout, simple enough to implement and use that can become the new training standard. The proposed Progressive Data Dropout reduces the number of effective epochs to as little as 12.4% of the baseline. This savings actually do not come at any cost for accuracy. Surprisingly, the proposed method improves accuracy by up to 4.82%. Our approach requires no changes to model architecture or optimizer, and can be applied across standard training pipelines, thus posing an excellent opportunity for wide adoption. Code can be found here: https://github.com/bazyagami/LearningWithRevision