Huan Lin

Jianwei Lin, Jiatai Lin, Cheng Lu et al.

Brain tumor segmentation (BTS) in magnetic resonance image (MRI) is crucial for brain tumor diagnosis, cancer management and research purposes. With the great success of the ten-year BraTS challenges as well as the advances of CNN and Transformer algorithms, a lot of outstanding BTS models have been proposed to tackle the difficulties of BTS in different technical aspects. However, existing studies hardly consider how to fuse the multi-modality images in a reasonable manner. In this paper, we leverage the clinical knowledge of how radiologists diagnose brain tumors from multiple MRI modalities and propose a clinical knowledge-driven brain tumor segmentation model, called CKD-TransBTS. Instead of directly concatenating all the modalities, we re-organize the input modalities by separating them into two groups according to the imaging principle of MRI. A dual-branch hybrid encoder with the proposed modality-correlated cross-attention block (MCCA) is designed to extract the multi-modality image features. The proposed model inherits the strengths from both Transformer and CNN with the local feature representation ability for precise lesion boundaries and long-range feature extraction for 3D volumetric images. To bridge the gap between Transformer and CNN features, we propose a Trans&CNN Feature Calibration block (TCFC) in the decoder. We compare the proposed model with five CNN-based models and six transformer-based models on the BraTS 2021 challenge dataset. Extensive experiments demonstrate that the proposed model achieves state-of-the-art brain tumor segmentation performance compared with all the competitors.

Binbin Xie, Xiangpeng Wei, Baosong Yang et al.

Keyphrase generation aims to automatically generate short phrases summarizing an input document. The recently emerged ONE2SET paradigm (Ye et al., 2021) generates keyphrases as a set and has achieved competitive performance. Nevertheless, we observe serious calibration errors outputted by ONE2SET, especially in the over-estimation of $\varnothing$ token (means "no corresponding keyphrase"). In this paper, we deeply analyze this limitation and identify two main reasons behind: 1) the parallel generation has to introduce excessive $\varnothing$ as padding tokens into training instances; and 2) the training mechanism assigning target to each slot is unstable and further aggravates the $\varnothing$ token over-estimation. To make the model well-calibrated, we propose WR-ONE2SET which extends ONE2SET with an adaptive instance-level cost Weighting strategy and a target Re-assignment mechanism. The former dynamically penalizes the over-estimated slots for different instances thus smoothing the uneven training distribution. The latter refines the original inappropriate assignment and reduces the supervisory signals of over-estimated slots. Experimental results on commonly-used datasets demonstrate the effectiveness and generality of our proposed paradigm.

Chu Han, Xipeng Pan, Lixu Yan et al.

Lung cancer is the leading cause of cancer death worldwide, and adenocarcinoma (LUAD) is the most common subtype. Exploiting the potential value of the histopathology images can promote precision medicine in oncology. Tissue segmentation is the basic upstream task of histopathology image analysis. Existing deep learning models have achieved superior segmentation performance but require sufficient pixel-level annotations, which is time-consuming and expensive. To enrich the label resources of LUAD and to alleviate the annotation efforts, we organize this challenge WSSS4LUAD to call for the outstanding weakly-supervised semantic segmentation (WSSS) techniques for histopathology images of LUAD. Participants have to design the algorithm to segment tumor epithelial, tumor-associated stroma and normal tissue with only patch-level labels. This challenge includes 10,091 patch-level annotations (the training set) and over 130 million labeled pixels (the validation and test sets), from 87 WSIs (67 from GDPH, 20 from TCGA). All the labels were generated by a pathologist-in-the-loop pipeline with the help of AI models and checked by the label review board. Among 532 registrations, 28 teams submitted the results in the test phase with over 1,000 submissions. Finally, the first place team achieved mIoU of 0.8413 (tumor: 0.8389, stroma: 0.7931, normal: 0.8919). According to the technical reports of the top-tier teams, CAM is still the most popular approach in WSSS. Cutmix data augmentation has been widely adopted to generate more reliable samples. With the success of this challenge, we believe that WSSS approaches with patch-level annotations can be a complement to the traditional pixel annotations while reducing the annotation efforts. The entire dataset has been released to encourage more researches on computational pathology in LUAD and more novel WSSS techniques.

Xin Zhang, Yanzhao Zhang, Dingkun Long et al.

We present systematic efforts in building long-context multilingual text representation model (TRM) and reranker from scratch for text retrieval. We first introduce a text encoder (base size) enhanced with RoPE and unpadding, pre-trained in a native 8192-token context (longer than 512 of previous multilingual encoders). Then we construct a hybrid TRM and a cross-encoder reranker by contrastive learning. Evaluations show that our text encoder outperforms the same-sized previous state-of-the-art XLM-R. Meanwhile, our TRM and reranker match the performance of large-sized state-of-the-art BGE-M3 models and achieve better results on long-context retrieval benchmarks. Further analysis demonstrate that our proposed models exhibit higher efficiency during both training and inference. We believe their efficiency and effectiveness could benefit various researches and industrial applications.

Yanzhao Zhang, Mingxin Li, Dingkun Long et al.

In this work, we introduce the Qwen3 Embedding series, a significant advancement over its predecessor, the GTE-Qwen series, in text embedding and reranking capabilities, built upon the Qwen3 foundation models. Leveraging the Qwen3 LLMs' robust capabilities in multilingual text understanding and generation, our innovative multi-stage training pipeline combines large-scale unsupervised pre-training with supervised fine-tuning on high-quality datasets. Effective model merging strategies further ensure the robustness and adaptability of the Qwen3 Embedding series. During the training process, the Qwen3 LLMs serve not only as backbone models but also play a crucial role in synthesizing high-quality, rich, and diverse training data across multiple domains and languages, thus enhancing the training pipeline. The Qwen3 Embedding series offers a spectrum of model sizes (0.6B, 4B, 8B) for both embedding and reranking tasks, addressing diverse deployment scenarios where users can optimize for either efficiency or effectiveness. Empirical evaluations demonstrate that the Qwen3 Embedding series achieves state-of-the-art results across diverse benchmarks. Notably, it excels on the multilingual evaluation benchmark MTEB for text embedding, as well as in various retrieval tasks, including code retrieval, cross-lingual retrieval and multilingual retrieval. To facilitate reproducibility and promote community-driven research and development, the Qwen3 Embedding models are publicly available under the Apache 2.0 license.

Zhiwei Cao, Baosong Yang, Huan Lin et al.

$k$-Nearest neighbor machine translation ($k$NN-MT) has attracted increasing attention due to its ability to non-parametrically adapt to new translation domains. By using an upstream NMT model to traverse the downstream training corpus, it is equipped with a datastore containing vectorized key-value pairs, which are retrieved during inference to benefit translation. However, there often exists a significant gap between upstream and downstream domains, which hurts the retrieval accuracy and the final translation quality. To deal with this issue, we propose a novel approach to boost the datastore retrieval of $k$NN-MT by reconstructing the original datastore. Concretely, we design a reviser to revise the key representations, making them better fit for the downstream domain. The reviser is trained using the collected semantically-related key-queries pairs, and optimized by two proposed losses: one is the key-queries semantic distance ensuring each revised key representation is semantically related to its corresponding queries, and the other is an L2-norm loss encouraging revised key representations to effectively retain the knowledge learned by the upstream NMT model. Extensive experiments on domain adaptation tasks demonstrate that our method can effectively boost the datastore retrieval and translation quality of $k$NN-MT.\footnote{Our code is available at \url{https://github.com/DeepLearnXMU/RevisedKey-knn-mt}.}

Chu Han, Jiatai Lin, Jinhai Mai et al.

Tissue-level semantic segmentation is a vital step in computational pathology. Fully-supervised models have already achieved outstanding performance with dense pixel-level annotations. However, drawing such labels on the giga-pixel whole slide images is extremely expensive and time-consuming. In this paper, we use only patch-level classification labels to achieve tissue semantic segmentation on histopathology images, finally reducing the annotation efforts. We proposed a two-step model including a classification and a segmentation phases. In the classification phase, we proposed a CAM-based model to generate pseudo masks by patch-level labels. In the segmentation phase, we achieved tissue semantic segmentation by our proposed Multi-Layer Pseudo-Supervision. Several technical novelties have been proposed to reduce the information gap between pixel-level and patch-level annotations. As a part of this paper, we introduced a new weakly-supervised semantic segmentation (WSSS) dataset for lung adenocarcinoma (LUAD-HistoSeg). We conducted several experiments to evaluate our proposed model on two datasets. Our proposed model outperforms two state-of-the-art WSSS approaches. Note that we can achieve comparable quantitative and qualitative results with the fully-supervised model, with only around a 2\% gap for MIoU and FwIoU. By comparing with manual labeling, our model can greatly save the annotation time from hours to minutes. The source code is available at: \url{https://github.com/ChuHan89/WSSS-Tissue}.

Binbin Xie, Jia Song, Liangying Shao et al.

Keyphrase prediction aims to generate phrases (keyphrases) that highly summarizes a given document. Recently, researchers have conducted in-depth studies on this task from various perspectives. In this paper, we comprehensively summarize representative studies from the perspectives of dominant models, datasets and evaluation metrics. Our work analyzes up to 167 previous works, achieving greater coverage of this task than previous surveys. Particularly, we focus highly on deep learning-based keyphrase prediction, which attracts increasing attention of this task in recent years. Afterwards, we conduct several groups of experiments to carefully compare representative models. To the best of our knowledge, our work is the first attempt to compare these models using the identical commonly-used datasets and evaluation metric, facilitating in-depth analyses of their disadvantages and advantages. Finally, we discuss the possible research directions of this task in the future.

Huan Lin, Liang Yao, Baosong Yang et al.

A good translation should not only translate the original content semantically, but also incarnate personal traits of the original text. For a real-world neural machine translation (NMT) system, these user traits (e.g., topic preference, stylistic characteristics and expression habits) can be preserved in user behavior (e.g., historical inputs). However, current NMT systems marginally consider the user behavior due to: 1) the difficulty of modeling user portraits in zero-shot scenarios, and 2) the lack of user-behavior annotated parallel dataset. To fill this gap, we introduce a novel framework called user-driven NMT. Specifically, a cache-based module and a user-driven contrastive learning method are proposed to offer NMT the ability to capture potential user traits from their historical inputs under a zero-shot learning fashion. Furthermore, we contribute the first Chinese-English parallel corpus annotated with user behavior called UDT-Corpus. Experimental results confirm that the proposed user-driven NMT can generate user-specific translations.

Boris Beranger, Huan Lin, Scott A. Sisson

Symbolic data analysis (SDA) is an emerging area of statistics concerned with understanding and modelling data that takes distributional form (i.e. symbols), such as random lists, intervals and histograms. It was developed under the premise that the statistical unit of interest is the symbol, and that inference is required at this level. Here we consider a different perspective, which opens a new research direction in the field of SDA. We assume that, as with a standard statistical analysis, inference is required at the level of individual-level data. However, the individual-level data are aggregated into symbols - group-based distributional-valued summaries - prior to the analysis. In this way, large and complex datasets can be reduced to a smaller number of distributional summaries, that may be analysed more efficiently than the original dataset. As such, we develop SDA techniques as a new approach for the analysis of big data. In particular we introduce a new general method for constructing likelihood functions for symbolic data based on a desired probability model for the underlying measurement-level data, while only observing the distributional summaries. This approach opens the door for new classes of symbol design and construction, in addition to developing SDA as a viable tool to enable and improve upon classical data analyses, particularly for very large and complex datasets. We illustrate this new direction for SDA research through several real and simulated data analyses.