Micha V. Nowak

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2papers

2 Papers

CVOct 21, 2024
Domain-Adaptive Pre-training of Self-Supervised Foundation Models for Medical Image Classification in Gastrointestinal Endoscopy

Marcel Roth, Micha V. Nowak, Adrian Krenzer et al.

Video capsule endoscopy has transformed gastrointestinal endoscopy (GIE) diagnostics by offering a non-invasive method for capturing detailed images of the gastrointestinal tract, enabling early disease detection. However, its potential is limited by the sheer volume of images generated during the imaging procedure, which can take anywhere from 6-8 hours and often produce up to 1 million images, necessitating automated analysis. Additionally, the variability of these images, combined with the need for expert annotations and the scarcity of large, high-quality labeled datasets, constrains the effectiveness of current medical image analysis models. To address this, we introduce a novel large GIE dataset, called EndoExtend24, created by merging ten existing public and private datasets, ensuring patient integrity across splits. EndoExtend24 includes over 226,000 labeled images, as well as dynamic class mappings, which allow unified training across datasets with differing labeling granularity, supporting up to 123 distinct pathological findings. Further, we propose to leverage domain adaptive pre-training of foundation models trained with self-supervision on generic image data, to adapt them to the task of GIE medical image diagnosis. Specifically, the EVA-02 model, which is based on the ViT architecture and trained on ImageNet-22k with masked image modeling (using EVA-CLIP as a MIM teacher), is pre-trained on the EndoExtend24 dataset to achieve domain adaptation, and finally trained on the Capsule Endoscopy 2024 Challenge dataset. Our model demonstrates robust performance, securing third place in the Capsule Endoscopy 2024 Challenge. We achieved a macro AUC of 0.762 and a balanced accuracy of 37.1% on the test set. These results emphasize the effectiveness of our domain-adaptive pre-training approach and the enriched EndoExtend24 dataset in advancing gastrointestinal endoscopy diagnostics.

LGJun 26, 2024
QBI: Quantile-Based Bias Initialization for Efficient Private Data Reconstruction in Federated Learning

Micha V. Nowak, Tim P. Bott, David Khachaturov et al.

Federated learning enables the training of machine learning models on distributed data without compromising user privacy, as data remains on personal devices and only model updates, such as gradients, are shared with a central coordinator. However, recent research has shown that the central entity can perfectly reconstruct private data from shared model updates by maliciously initializing the model's parameters. In this paper, we propose QBI, a novel bias initialization method that significantly enhances reconstruction capabilities. This is accomplished by directly solving for bias values yielding sparse activation patterns. Further, we propose PAIRS, an algorithm that builds on QBI. PAIRS can be deployed when a separate dataset from the target domain is available to further increase the percentage of data that can be fully recovered. Measured by the percentage of samples that can be perfectly reconstructed from batches of various sizes, our approach achieves significant improvements over previous methods with gains of up to 50% on ImageNet and up to 60% on the IMDB sentiment analysis text dataset. Furthermore, we establish theoretical limits for attacks leveraging stochastic gradient sparsity, providing a foundation for understanding the fundamental constraints of these attacks. We empirically assess these limits using synthetic datasets. Finally, we propose and evaluate AGGP, a defensive framework designed to prevent gradient sparsity attacks, contributing to the development of more secure and private federated learning systems.