Guojun Liao

Zicong Zhou, Baihan Zhao, Andreas Mang et al.

This paper introduces VPreg, a novel diffeomorphic image registration method. This work provides several improvements to our past work on mesh generation and diffeomorphic image registration. VPreg aims to achieve excellent registration accuracy while controlling the quality of the registration transformations. It ensures a positive Jacobian determinant of the spatial transformation and provides an accurate approximation of the inverse of the registration, a crucial property for many neuroimaging workflows. Unlike conventional methods, VPreg generates this inverse transformation within the group of diffeomorphisms rather than operating on the image space. The core of VPreg is a grid generation approach, referred to as \emph{Variational Principle} (VP), which constructs non-folding grids with prescribed Jacobian determinant and curl. These VP-generated grids guarantee diffeomorphic spatial transformations essential for computational anatomy and morphometry, and provide a more accurate inverse than existing methods. To assess the potential of the proposed approach, we conduct a performance analysis for 150 registrations of brain scans from the OASIS-1 dataset. Performance evaluation based on Dice scores for 35 regions of interest, along with an empirical analysis of the properties of the computed spatial transformations, demonstrates that VPreg outperforms state-of-the-art methods in terms of Dice scores, regularity properties of the computed transformation, and accuracy and consistency of the provided inverse map. We compare our results to ANTs-SyN, Freesurfer-Easyreg, and FSL-Fnirt.

Yongpei Zhu, Zicong Zhou, Guojun Liao et al.

Accurate registration of medical images is vital for doctor's diagnosis and quantitative analysis. In this paper, we propose a new deformable medical image registration method based on average geometric transformations and VoxelMorph CNN architecture. We compute the differential geometric information including Jacobian determinant(JD) and the curl vector(CV) of diffeomorphic registration field and use them as multi-channel of VoxelMorph CNN for second train. In addition, we use the average transformation to construct a standard brain MRI atlas which can be used as fixed image. We verify our method on two datasets including ADNI dataset and MRBrainS18 Challenge dataset, and obtain excellent improvement on MR image registration with average Dice scores and non-negative Jacobian locations compared with MIT's original method. The experimental results show the method can achieve better performance in brain MRI diagnosis.

Yongpei Zhu, Zicong Zhou, Guojun Liao et al.

Accurate segmentation of brain tissue in magnetic resonance images (MRI) is a diffcult task due to different types of brain abnormalities. Using information and features from multimodal MRI including T1, T1-weighted inversion recovery (T1-IR) and T2-FLAIR and differential geometric features including the Jacobian determinant(JD) and the curl vector(CV) derived from T1 modality can result in a more accurate analysis of brain images. In this paper, we use the differential geometric information including JD and CV as image characteristics to measure the differences between different MRI images, which represent local size changes and local rotations of the brain image, and we can use them as one CNN channel with other three modalities (T1-weighted, T1-IR and T2-FLAIR) to get more accurate results of brain segmentation. We test this method on two datasets including IBSR dataset and MRBrainS datasets based on the deep voxelwise residual network, namely VoxResNet, and obtain excellent improvement over single modality or three modalities and increases average DSC(Cerebrospinal Fluid (CSF), Gray Matter (GM) and White Matter (WM)) by about 1.5% on the well-known MRBrainS18 dataset and about 2.5% on the IBSR dataset. Moreover, we discuss that one modality combined with its JD or CV information can replace the segmentation effect of three modalities, which can provide medical conveniences for doctor to diagnose because only to extract T1-modality MRI image of patients. Finally, we also compare the segmentation performance of our method in two networks, VoxResNet and U-Net network. The results show VoxResNet has a better performance than U-Net network with our method in brain MRI segmentation. We believe the proposed method can advance the performance in brain segmentation and clinical diagnosis.