Ameer Hamza

Muhammad Bilal, Ameer Hamza, Nadia Malik

Objective: This review aims to analyze the application of natural language processing (NLP) techniques in cancer research using electronic health records (EHRs) and clinical notes. This review addresses gaps in the existing literature by providing a broader perspective than previous studies focused on specific cancer types or applications. Methods: A comprehensive literature search was conducted using the Scopus database, identifying 94 relevant studies published between 2019 and 2024. Data extraction included study characteristics, cancer types, NLP methodologies, dataset information, performance metrics, challenges, and future directions. Studies were categorized based on cancer types and NLP applications. Results: The results showed a growing trend in NLP applications for cancer research, with breast, lung, and colorectal cancers being the most studied. Information extraction and text classification emerged as predominant NLP tasks. A shift from rule-based to advanced machine learning techniques, particularly transformer-based models, was observed. The Dataset sizes used in existing studies varied widely. Key challenges included the limited generalizability of proposed solutions and the need for improved integration into clinical workflows. Conclusion: NLP techniques show significant potential in analyzing EHRs and clinical notes for cancer research. However, future work should focus on improving model generalizability, enhancing robustness in handling complex clinical language, and expanding applications to understudied cancer types. Integration of NLP tools into clinical practice and addressing ethical considerations remain crucial for utilizing the full potential of NLP in enhancing cancer diagnosis, treatment, and patient outcomes.

Abdullah, Ameer Hamza, Seong Tae Kim

Medical report generation is the task of automatically writing radiology reports for chest X-ray images. Manually composing these reports is a time-consuming process that is also prone to human errors. Generating medical reports can therefore help reduce the burden on radiologists. In other words, we can promote greater clinical automation in the medical domain. In this work, we propose a new framework leveraging vision-enabled Large Language Models (LLM) for the task of medical report generation. We introduce a lightweight solution that achieves better or comparative performance as compared to previous solutions on the task of medical report generation. We conduct extensive experiments exploring different model sizes and enhancement approaches, such as prefix tuning to improve the text generation abilities of the LLMs. We evaluate our approach on a prominent large-scale radiology report dataset - MIMIC-CXR. Our results demonstrate the capability of our resource-efficient framework to generate patient-specific reports with strong medical contextual understanding and high precision.