Xueying Zhan

Xueying Zhan, Qingzhong Wang, Kuan-hao Huang et al.

While deep learning (DL) is data-hungry and usually relies on extensive labeled data to deliver good performance, Active Learning (AL) reduces labeling costs by selecting a small proportion of samples from unlabeled data for labeling and training. Therefore, Deep Active Learning (DAL) has risen as a feasible solution for maximizing model performance under a limited labeling cost/budget in recent years. Although abundant methods of DAL have been developed and various literature reviews conducted, the performance evaluation of DAL methods under fair comparison settings is not yet available. Our work intends to fill this gap. In this work, We construct a DAL toolkit, DeepAL+, by re-implementing 19 highly-cited DAL methods. We survey and categorize DAL-related works and construct comparative experiments across frequently used datasets and DAL algorithms. Additionally, we explore some factors (e.g., batch size, number of epochs in the training process) that influence the efficacy of DAL, which provides better references for researchers to design their DAL experiments or carry out DAL-related applications.

Xingjian Li, Pengkun Yang, Yangcheng Gu et al.

Uncertainty estimation for unlabeled data is crucial to active learning. With a deep neural network employed as the backbone model, the data selection process is highly challenging due to the potential over-confidence of the model inference. Existing methods resort to special learning fashions (e.g. adversarial) or auxiliary models to address this challenge. This tends to result in complex and inefficient pipelines, which would render the methods impractical. In this work, we propose a novel algorithm that leverages noise stability to estimate data uncertainty. The key idea is to measure the output derivation from the original observation when the model parameters are randomly perturbed by noise. We provide theoretical analyses by leveraging the small Gaussian noise theory and demonstrate that our method favors a subset with large and diverse gradients. Our method is generally applicable in various tasks, including computer vision, natural language processing, and structural data analysis. It achieves competitive performance compared against state-of-the-art active learning baselines.

Xueying Zhan, Zeyu Dai, Qingzhong Wang et al.

Pool-based Active Learning (AL) has achieved great success in minimizing labeling cost by sequentially selecting informative unlabeled samples from a large unlabeled data pool and querying their labels from oracle/annotators. However, existing AL sampling strategies might not work well in out-of-distribution (OOD) data scenarios, where the unlabeled data pool contains some data samples that do not belong to the classes of the target task. Achieving good AL performance under OOD data scenarios is a challenging task due to the natural conflict between AL sampling strategies and OOD sample detection. AL selects data that are hard to be classified by the current basic classifier (e.g., samples whose predicted class probabilities have high entropy), while OOD samples tend to have more uniform predicted class probabilities (i.e., high entropy) than in-distribution (ID) data. In this paper, we propose a sampling scheme, Monte-Carlo Pareto Optimization for Active Learning (POAL), which selects optimal subsets of unlabeled samples with fixed batch size from the unlabeled data pool. We cast the AL sampling task as a multi-objective optimization problem, and thus we utilize Pareto optimization based on two conflicting objectives: (1) the normal AL data sampling scheme (e.g., maximum entropy), and (2) the confidence of not being an OOD sample. Experimental results show its effectiveness on both classical Machine Learning (ML) and Deep Learning (DL) tasks.

Yifeng Wang, Xueying Zhan, Siyu Huang · cmu

As deep learning continues to evolve, the need for data efficiency becomes increasingly important. Considering labeling large datasets is both time-consuming and expensive, active learning (AL) provides a promising solution to this challenge by iteratively selecting the most informative subsets of examples to train deep neural networks, thereby reducing the labeling cost. However, the effectiveness of different AL algorithms can vary significantly across data scenarios, and determining which AL algorithm best fits a given task remains a challenging problem. This work presents the first differentiable AL strategy search method, named AutoAL, which is designed on top of existing AL sampling strategies. AutoAL consists of two neural nets, named SearchNet and FitNet, which are optimized concurrently under a differentiable bi-level optimization framework. For any given task, SearchNet and FitNet are iteratively co-optimized using the labeled data, learning how well a set of candidate AL algorithms perform on that task. With the optimal AL strategies identified, SearchNet selects a small subset from the unlabeled pool for querying their annotations, enabling efficient training of the task model. Experimental results demonstrate that AutoAL consistently achieves superior accuracy compared to all candidate AL algorithms and other selective AL approaches, showcasing its potential for adapting and integrating multiple existing AL methods across diverse tasks and domains. Code is available at: https://github.com/haizailache999/AutoAL.

Xiaoqi Wu, Xueying Zhan, Wen Li et al.

Cryo-electron microscopy (cryo-EM) enables single-particle analysis of biological macromolecules under strict low-dose imaging conditions, but the resulting micrographs often exhibit extremely low signal-to-noise ratios and weak particle visibility. Image denoising is therefore an important preprocessing step for downstream cryo-EM analysis, including particle picking, 2D classification, and 3D reconstruction. Existing cryo-EM denoising methods are commonly trained with pixel-wise or Noise2Noise-style objectives, which can improve visual quality but do not explicitly account for structural consistency required by downstream analysis. In this work, we propose a score-based denoising framework for cryo-EM that learns the clean-data score to recover particle signals while better preserving structural information. Building on this formulation, we further introduce a target-guided variant that incorporates reference-density guidance to stabilize score learning under weak and ambiguous signal conditions. Rather than simply amplifying particle-like responses, our framework better suppresses structured low-frequency background, which improves particle--background separability for downstream analysis. Experiments on multiple cryo-EM datasets show that our score-based methods consistently improve downstream particle picking and produce more structure-consistent 3D reconstructions. Experiments on multiple cryo-EM datasets show that our methods improve downstream particle picking and produce more structure-consistent reconstructions.

Chentianye Xu, Xueying Zhan, Min Xu

Cryo-electron microscopy (cryo-EM) emerges as a pivotal technology for determining the architecture of cells, viruses, and protein assemblies at near-atomic resolution. Traditional particle picking, a key step in cryo-EM, struggles with manual effort and automated methods' sensitivity to low signal-to-noise ratio (SNR) and varied particle orientations. Furthermore, existing neural network (NN)-based approaches often require extensive labeled datasets, limiting their practicality. To overcome these obstacles, we introduce cryoMAE, a novel approach based on few-shot learning that harnesses the capabilities of Masked Autoencoders (MAE) to enable efficient selection of single particles in cryo-EM images. Contrary to conventional NN-based techniques, cryoMAE requires only a minimal set of positive particle images for training yet demonstrates high performance in particle detection. Furthermore, the implementation of a self-cross similarity loss ensures distinct features for particle and background regions, thereby enhancing the discrimination capability of cryoMAE. Experiments on large-scale cryo-EM datasets show that cryoMAE outperforms existing state-of-the-art (SOTA) methods, improving 3D reconstruction resolution by up to 22.4%.

Lingyu Jiang, Lingyu Xu, Peiran Li et al.

Probabilistic Time-Series Forecasting (PTSF) is critical for uncertainty-aware decision making, but existing generative models, such as diffusion-based approaches, are computationally prohibitive due to expensive iterative sampling. Non-sampling frameworks like Multiple Choice Learning (MCL) offer an efficient alternative, but suffer from severe training instability and hypothesis collapse, which has historically hindered their performance. This problem is dramatically exacerbated when attempting to combine them with modern, efficient MLP-based backbones. To resolve this fundamental incompatibility, we propose TimePre, a novel framework that successfully unifies the efficiency of MLP-based models with the distributional flexibility of the MCL paradigm. The core of our solution is Stabilized Instance Normalization (SIN), a novel normalization layer that explicitly remedies this incompatibility. SIN stabilizes the hybrid architecture by correcting channel-wise statistical shifts, definitively resolving the catastrophic hypothesis collapse. Extensive experiments on six benchmark datasets demonstrate that TimePre achieves new state-of-the-art accuracy on key probabilistic metrics. Critically, TimePre achieves inference speeds orders of magnitude faster than sampling-based models and, unlike prior MCL work, demonstrates stable performance scaling. It thus bridges the long-standing gap between accuracy, efficiency, and stability in probabilistic forecasting.

Xueying Zhan, Qing Li, Antoni B. Chan

Active learning aims to achieve greater accuracy with less training data by selecting the most useful data samples from which it learns. Single-criterion based methods (i.e., informativeness and representativeness based methods) are simple and efficient; however, they lack adaptability to different real-world scenarios. In this paper, we introduce a multiple-criteria based active learning algorithm, which incorporates three complementary criteria, i.e., informativeness, representativeness and diversity, to make appropriate selections in the active learning rounds under different data types. We consider the selection process as a Determinantal Point Process, which good balance among these criteria. We refine the query selection strategy by both selecting the hardest unlabeled data sample and biasing towards the classifiers that are more suitable for the current data distribution. In addition, we also consider the dependencies and relationships between these data points in data selection by means of centroidbased clustering approaches. Through evaluations on synthetic and real-world datasets, we show that our method performs significantly better and is more stable than other multiple-criteria based AL algorithms.

Xueying Zhan, Antoni Bert Chan

Active learning (AL) is a subfield of machine learning (ML) in which a learning algorithm could achieve good accuracy with less training samples by interactively querying a user/oracle to label new data points. Pool-based AL is well-motivated in many ML tasks, where unlabeled data is abundant, but their labels are hard to obtain. Although many pool-based AL methods have been developed, the lack of a comparative benchmarking and integration of techniques makes it difficult to: 1) determine the current state-of-the-art technique; 2) evaluate the relative benefit of new methods for various properties of the dataset; 3) understand what specific problems merit greater attention; and 4) measure the progress of the field over time. To conduct easier comparative evaluation among AL methods, we present a benchmark task for pool-based active learning, which consists of benchmarking datasets and quantitative metrics that summarize overall performance. We present experiment results for various active learning strategies, both recently proposed and classic highly-cited methods, and draw insights from the results.