Wenjun Ma

Weishan Cai, Wenjun Ma, Jieyu Zhan et al.

Entity Alignment (EA) has attracted widespread attention in both academia and industry, which aims to seek entities with same meanings from different Knowledge Graphs (KGs). There are substantial multi-step relation paths between entities in KGs, indicating the semantic relations of entities. However, existing methods rarely consider path information because not all natural paths facilitate for EA judgment. In this paper, we propose a more effective entity alignment framework, RPR-RHGT, which integrates relation and path structure information, as well as the heterogeneous information in KGs. Impressively, an initial reliable path reasoning algorithm is developed to generate the paths favorable for EA task from the relation structures of KGs, which is the first algorithm in the literature to successfully use unrestricted path information. In addition, to efficiently capture heterogeneous features in entity neighborhoods, a relation-aware heterogeneous graph transformer is designed to model the relation and path structures of KGs. Extensive experiments on three well-known datasets show RPR-RHGT significantly outperforms 11 state-of-the-art methods, exceeding the best performing baseline up to 8.62% on Hits@1. We also show its better performance than the baselines on different ratios of training set, and harder datasets.

Jia Wei, Yun Li, Xiaomao Fan et al.

Laryngo-pharyngeal cancer (LPC) is a highly lethal malignancy in the head and neck region. Recent advancements in tumor detection, particularly through dual-branch network architectures, have significantly improved diagnostic accuracy by integrating global and local feature extraction. However, challenges remain in accurately localizing lesions and fully capitalizing on the complementary nature of features within these branches. To address these issues, we propose SAM-Swin, an innovative SAM-driven Dual-Swin Transformer for laryngo-pharyngeal tumor detection. This model leverages the robust segmentation capabilities of the Segment Anything Model 2 (SAM2) to achieve precise lesion segmentation. Meanwhile, we present a multi-scale lesion-aware enhancement module (MS-LAEM) designed to adaptively enhance the learning of nuanced complementary features across various scales, improving the quality of feature extraction and representation. Furthermore, we implement a multi-scale class-aware guidance (CAG) loss that delivers multi-scale targeted supervision, thereby enhancing the model's capacity to extract class-specific features. To validate our approach, we compiled three LPC datasets from the First Affiliated Hospital (FAHSYSU), the Sixth Affiliated Hospital (SAHSYSU) of Sun Yat-sen University, and Nanfang Hospital of Southern Medical University (NHSMU). The FAHSYSU dataset is utilized for internal training, while the SAHSYSU and NHSMU datasets serve for external evaluation. Extensive experiments demonstrate that SAM-Swin outperforms state-of-the-art methods, showcasing its potential for advancing LPC detection and improving patient outcomes. The source code of SAM-Swin is available at the URL of \href{https://github.com/VVJia/SAM-Swin}{https://github.com/VVJia/SAM-Swin}.

Yang Cao, Sikun Yang, Kai He et al.

Measuring similarity between incomplete data is a fundamental challenge in web mining, recommendation systems, and user behavior analysis. Traditional approaches either discard incomplete data or perform imputation as a preprocessing step, leading to information loss and biased similarity estimates. This paper presents the proximity kernel, a new similarity measure that directly computes similarity between incomplete data in kernel feature space without explicit imputation in the original space. The proposed method introduces data-dependent binning combined with proximity assignment to project data into a high-dimensional sparse representation that adapts to local density variations. For missing value handling, we propose a cascading fallback strategy to estimate missing feature distributions. We conduct clustering tasks on the proposed kernel representation across 12 real world incomplete datasets, demonstrating superior performance compared to existing methods while maintaining linear time complexity. All the code are available at https://anonymous.4open.science/r/proximity-kernel-2289.

Meishen He, Wenjun Ma, Jiao Wang et al.

The Dempster-Shafer theory of evidence has been widely applied in the field of information fusion under uncertainty. Most existing research focuses on combining evidence within the same frame of discernment. However, in real-world scenarios, trained algorithms or data often originate from different regions or organizations, where data silos are prevalent. As a result, using different data sources or models to generate basic probability assignments may lead to heterogeneous frames, for which traditional fusion methods often yield unsatisfactory results. To address this challenge, this study proposes an open-world information fusion method, termed Full Negation Belief Transformation (FNBT), based on the Dempster-Shafer theory. More specially, a criterion is introduced to determine whether a given fusion task belongs to the open-world setting. Then, by extending the frames, the method can accommodate elements from heterogeneous frames. Finally, a full negation mechanism is employed to transform the mass functions, so that existing combination rules can be applied to the transformed mass functions for such information fusion. Theoretically, the proposed method satisfies three desirable properties, which are formally proven: mass function invariance, heritability, and essential conflict elimination. Empirically, FNBT demonstrates superior performance in pattern classification tasks on real-world datasets and successfully resolves Zadeh's counterexample, thereby validating its practical effectiveness.

Hang Yuan, Chen Li, Wenjun Ma et al.

Hit-like molecular generation with therapeutic potential is essential for target-specific drug discovery. However, the field lacks heterogeneous data and unified frameworks for integrating diverse molecular representations. To bridge this gap, we introduce TextOmics, a pioneering benchmark that establishes one-to-one correspondences between omics expressions and molecular textual descriptions. TextOmics provides a heterogeneous dataset that facilitates molecular generation through representations alignment. Built upon this foundation, we propose ToDi, a generative framework that jointly conditions on omics expressions and molecular textual descriptions to produce biologically relevant, chemically valid, hit-like molecules. ToDi leverages two encoders (OmicsEn and TextEn) to capture multi-level biological and semantic associations, and develops conditional diffusion (DiffGen) for controllable generation. Extensive experiments confirm the effectiveness of TextOmics and demonstrate ToDi outperforms existing state-of-the-art approaches, while also showcasing remarkable potential in zero-shot therapeutic molecular generation. Sources are available at: https://github.com/hala-ToDi.

Tianyi Chen, Hao Yang, Wenjun Ma et al.

Recently, data-driven methods have shown great promise for discovering governing equations from simulation or experimental data. However, most existing approaches are limited to scalar equations, with few capable of identifying tensor relationships. In this work, we propose a general data-driven framework for identifying tensor equations, referred to as Symbolic Identification of Tensor Equations (SITE). The core idea of SITE--representing tensor equations using a host-plasmid structure--is inspired by the multidimensional gene expression programming (M-GEP) approach. To improve the robustness of the evolutionary process, SITE adopts a genetic information retention strategy. Moreover, SITE introduces two key innovations beyond conventional evolutionary algorithms. First, it incorporates a dimensional homogeneity check to restrict the search space and eliminate physically invalid expressions. Second, it replaces traditional linear scaling with a tensor linear regression technique, greatly enhancing the efficiency of numerical coefficient optimization. We validate SITE using two benchmark scenarios, where it accurately recovers target equations from synthetic data, showing robustness to noise and small sample sizes. Furthermore, SITE is applied to identify constitutive relations directly from molecular simulation data, which are generated without reliance on macroscopic constitutive models. It adapts to both compressible and incompressible flow conditions and successfully identifies the corresponding macroscopic forms, highlighting its potential for data-driven discovery of tensor equation.

Dongdong Meng, Sheng Li, Hao Wu et al.

Accurate automatic medical image segmentation relies on high-quality, dense annotations, which are costly and time-consuming. Weakly supervised learning provides a more efficient alternative by leveraging sparse and coarse annotations instead of dense, precise ones. However, segmentation performance degradation and overfitting caused by sparse annotations remain key challenges. To address these issues, we propose CmFNet, a novel 3D weakly supervised cross-modal medical image segmentation approach. CmFNet consists of three main components: a modality-specific feature learning network, a cross-modal feature learning network, and a hybrid-supervised learning strategy. Specifically, the modality-specific feature learning network and the cross-modal feature learning network effectively integrate complementary information from multi-modal images, enhancing shared features across modalities to improve segmentation performance. Additionally, the hybrid-supervised learning strategy guides segmentation through scribble supervision, intra-modal regularization, and inter-modal consistency, modeling spatial and contextual relationships while promoting feature alignment. Our approach effectively mitigates overfitting, delivering robust segmentation results. It excels in segmenting both challenging small tumor regions and common anatomical structures. Extensive experiments on a clinical cross-modal nasopharyngeal carcinoma (NPC) dataset (including CT and MR imaging) and the publicly available CT Whole Abdominal Organ dataset (WORD) show that our approach outperforms state-of-the-art weakly supervised methods. In addition, our approach also outperforms fully supervised methods when full annotation is used. Our approach can facilitate clinical therapy and benefit various specialists, including physicists, radiologists, pathologists, and oncologists.

Weishan Cai, Wenjun Ma, Yuncheng Jiang

The success of current Entity Alignment (EA) task depends largely on the supervision information provided by labeled data. Considering the cost of labeled data, most supervised methods are difficult to apply in practical scenarios. Therefore, more and more works based on contrastive learning, active learning or other deep learning techniques have been developed, to solve the performance bottleneck caused by the lack of labeled data. However, the existing unsupervised EA methods still have some limitations, either their modeling complexity is high or they cannot balance the effectiveness and practicality of alignment. To overcome these issues, we propose a Simplifying and Learnable graph convolutional attention network for Unsupervised Knowledge Graphs alignment method (SLU). Specifically, we first introduce LCAT, a new and simple framework as the backbone network to model the graph structure of two KGs. Then we design a reconstruction method of relation structure based on potential matching relations for efficiently filtering invalid neighborhood information of aligned entities, to improve the usability and scalability of SLU. Impressively, a similarity function based on consistency is proposed to better measure the similarity of candidate entity pairs. Finally, we conduct extensive experiments on three datasets of different sizes (15K and 100K) and different types (cross-lingual and monolingual) to verify the superiority of SLU. Experimental results show that SLU significantly improves alignment accuracy, outperforming 25 supervised or unsupervised methods, and improving 6.4% in Hits@1 over the best baseline in the best case.