Hongseok Yang

LG
h-index7
33papers
1,039citations
Novelty53%
AI Score41

33 Papers

PLAug 22, 2022
Smoothness Analysis for Probabilistic Programs with Application to Optimised Variational Inference

Wonyeol Lee, Xavier Rival, Hongseok Yang · stanford

We present a static analysis for discovering differentiable or more generally smooth parts of a given probabilistic program, and show how the analysis can be used to improve the pathwise gradient estimator, one of the most popular methods for posterior inference and model learning. Our improvement increases the scope of the estimator from differentiable models to non-differentiable ones without requiring manual intervention of the user; the improved estimator automatically identifies differentiable parts of a given probabilistic program using our static analysis, and applies the pathwise gradient estimator to the identified parts while using a more general but less efficient estimator, called score estimator, for the rest of the program. Our analysis has a surprisingly subtle soundness argument, partly due to the misbehaviours of some target smoothness properties when viewed from the perspective of program analysis designers. For instance, some smoothness properties are not preserved by function composition, and this makes it difficult to analyse sequential composition soundly without heavily sacrificing precision. We formulate five assumptions on a target smoothness property, prove the soundness of our analysis under those assumptions, and show that our leading examples satisfy these assumptions. We also show that by using information from our analysis instantiated for differentiability, our improved gradient estimator satisfies an important differentiability requirement and thus computes the correct estimate on average (i.e., returns an unbiased estimate) under a regularity condition. Our experiments with representative probabilistic programs in the Pyro language show that our static analysis is capable of identifying smooth parts of those programs accurately, and making our improved pathwise gradient estimator exploit all the opportunities for high performance in those programs.

LGNov 13, 2023Code
Learning Symmetrization for Equivariance with Orbit Distance Minimization

Tien Dat Nguyen, Jinwoo Kim, Hongseok Yang et al.

We present a general framework for symmetrizing an arbitrary neural-network architecture and making it equivariant with respect to a given group. We build upon the proposals of Kim et al. (2023); Kaba et al. (2023) for symmetrization, and improve them by replacing their conversion of neural features into group representations, with an optimization whose loss intuitively measures the distance between group orbits. This change makes our approach applicable to a broader range of matrix groups, such as the Lorentz group O(1, 3), than these two proposals. We experimentally show our method's competitiveness on the SO(2) image classification task, and also its increased generality on the task with O(1, 3). Our implementation will be made accessible at https://github.com/tiendatnguyen-vision/Orbit-symmetrize.

AIJun 28, 2022
Learning Symmetric Rules with SATNet

Sangho Lim, Eun-Gyeol Oh, Hongseok Yang

SATNet is a differentiable constraint solver with a custom backpropagation algorithm, which can be used as a layer in a deep-learning system. It is a promising proposal for bridging deep learning and logical reasoning. In fact, SATNet has been successfully applied to learn, among others, the rules of a complex logical puzzle, such as Sudoku, just from input and output pairs where inputs are given as images. In this paper, we show how to improve the learning of SATNet by exploiting symmetries in the target rules of a given but unknown logical puzzle or more generally a logical formula. We present SymSATNet, a variant of SATNet that translates the given symmetries of the target rules to a condition on the parameters of SATNet and requires that the parameters should have a particular parametric form that guarantees the condition. The requirement dramatically reduces the number of parameters to learn for the rules with enough symmetries, and makes the parameter learning of SymSATNet much easier than that of SATNet. We also describe a technique for automatically discovering symmetries of the target rules from examples. Our experiments with Sudoku and Rubik's cube show the substantial improvement of SymSATNet over the baseline SATNet.

MLMay 17, 2022
Deep neural networks with dependent weights: Gaussian Process mixture limit, heavy tails, sparsity and compressibility

Hoil Lee, Fadhel Ayed, Paul Jung et al.

This article studies the infinite-width limit of deep feedforward neural networks whose weights are dependent, and modelled via a mixture of Gaussian distributions. Each hidden node of the network is assigned a nonnegative random variable that controls the variance of the outgoing weights of that node. We make minimal assumptions on these per-node random variables: they are iid and their sum, in each layer, converges to some finite random variable in the infinite-width limit. Under this model, we show that each layer of the infinite-width neural network can be characterised by two simple quantities: a non-negative scalar parameter and a Lévy measure on the positive reals. If the scalar parameters are strictly positive and the Lévy measures are trivial at all hidden layers, then one recovers the classical Gaussian process (GP) limit, obtained with iid Gaussian weights. More interestingly, if the Lévy measure of at least one layer is non-trivial, we obtain a mixture of Gaussian processes (MoGP) in the large-width limit. The behaviour of the neural network in this regime is very different from the GP regime. One obtains correlated outputs, with non-Gaussian distributions, possibly with heavy tails. Additionally, we show that, in this regime, the weights are compressible, and some nodes have asymptotically non-negligible contributions, therefore representing important hidden features. Many sparsity-promoting neural network models can be recast as special cases of our approach, and we discuss their infinite-width limits; we also present an asymptotic analysis of the pruning error. We illustrate some of the benefits of the MoGP regime over the GP regime in terms of representation learning and compressibility on simulated, MNIST and Fashion MNIST datasets.

MLFeb 2, 2023
Over-parameterised Shallow Neural Networks with Asymmetrical Node Scaling: Global Convergence Guarantees and Feature Learning

Francois Caron, Fadhel Ayed, Paul Jung et al.

We consider gradient-based optimisation of wide, shallow neural networks, where the output of each hidden node is scaled by a positive parameter. The scaling parameters are non-identical, differing from the classical Neural Tangent Kernel (NTK) parameterisation. We prove that for large such neural networks, with high probability, gradient flow and gradient descent converge to a global minimum and can learn features in some sense, unlike in the NTK parameterisation. We perform experiments illustrating our theoretical results and discuss the benefits of such scaling in terms of prunability and transfer learning.

LGJun 1, 2023
Regularizing Towards Soft Equivariance Under Mixed Symmetries

Hyunsu Kim, Hyungi Lee, Hongseok Yang et al.

Datasets often have their intrinsic symmetries, and particular deep-learning models called equivariant or invariant models have been developed to exploit these symmetries. However, if some or all of these symmetries are only approximate, which frequently happens in practice, these models may be suboptimal due to the architectural restrictions imposed on them. We tackle this issue of approximate symmetries in a setup where symmetries are mixed, i.e., they are symmetries of not single but multiple different types and the degree of approximation varies across these types. Instead of proposing a new architectural restriction as in most of the previous approaches, we present a regularizer-based method for building a model for a dataset with mixed approximate symmetries. The key component of our method is what we call equivariance regularizer for a given type of symmetries, which measures how much a model is equivariant with respect to the symmetries of the type. Our method is trained with these regularizers, one per each symmetry type, and the strength of the regularizers is automatically tuned during training, leading to the discovery of the approximation levels of some candidate symmetry types without explicit supervision. Using synthetic function approximation and motion forecasting tasks, we demonstrate that our method achieves better accuracy than prior approaches while discovering the approximate symmetry levels correctly.

CVJul 5, 2024
Variational Partial Group Convolutions for Input-Aware Partial Equivariance of Rotations and Color-Shifts

Hyunsu Kim, Yegon Kim, Hongseok Yang et al.

Group Equivariant CNNs (G-CNNs) have shown promising efficacy in various tasks, owing to their ability to capture hierarchical features in an equivariant manner. However, their equivariance is fixed to the symmetry of the whole group, limiting adaptability to diverse partial symmetries in real-world datasets, such as limited rotation symmetry of handwritten digit images and limited color-shift symmetry of flower images. Recent efforts address this limitation, one example being Partial G-CNN which restricts the output group space of convolution layers to break full equivariance. However, such an approach still fails to adjust equivariance levels across data. In this paper, we propose a novel approach, Variational Partial G-CNN (VP G-CNN), to capture varying levels of partial equivariance specific to each data instance. VP G-CNN redesigns the distribution of the output group elements to be conditioned on input data, leveraging variational inference to avoid overfitting. This enables the model to adjust its equivariance levels according to the needs of individual data points. Additionally, we address training instability inherent in discrete group equivariance models by redesigning the reparametrizable distribution. We demonstrate the effectiveness of VP G-CNN on both toy and real-world datasets, including MNIST67-180, CIFAR10, ColorMNIST, and Flowers102. Our results show robust performance, even in uncertainty metrics.

LGDec 6, 2023
An Infinite-Width Analysis on the Jacobian-Regularised Training of a Neural Network

Taeyoung Kim, Hongseok Yang

The recent theoretical analysis of deep neural networks in their infinite-width limits has deepened our understanding of initialisation, feature learning, and training of those networks, and brought new practical techniques for finding appropriate hyperparameters, learning network weights, and performing inference. In this paper, we broaden this line of research by showing that this infinite-width analysis can be extended to the Jacobian of a deep neural network. We show that a multilayer perceptron (MLP) and its Jacobian at initialisation jointly converge to a Gaussian process (GP) as the widths of the MLP's hidden layers go to infinity and characterise this GP. We also prove that in the infinite-width limit, the evolution of the MLP under the so-called robust training (i.e., training with a regulariser on the Jacobian) is described by a linear first-order ordinary differential equation that is determined by a variant of the Neural Tangent Kernel. We experimentally show the relevance of our theoretical claims to wide finite networks, and empirically analyse the properties of kernel regression solution to obtain an insight into Jacobian regularisation.

LGOct 15, 2025
Axial Neural Networks for Dimension-Free Foundation Models

Hyunsu Kim, Jonggeon Park, Joan Bruna et al.

The advent of foundation models in AI has significantly advanced general-purpose learning, enabling remarkable capabilities in zero-shot inference and in-context learning. However, training such models on physics data, including solutions to partial differential equations (PDEs), poses a unique challenge due to varying dimensionalities across different systems. Traditional approaches either fix a maximum dimension or employ separate encoders for different dimensionalities, resulting in inefficiencies. To address this, we propose a dimension-agnostic neural network architecture, the Axial Neural Network (XNN), inspired by parameter-sharing structures such as Deep Sets and Graph Neural Networks. XNN generalizes across varying tensor dimensions while maintaining computational efficiency. We convert existing PDE foundation models into axial neural networks and evaluate their performance across three training scenarios: training from scratch, pretraining on multiple PDEs, and fine-tuning on a single PDE. Our experiments show that XNNs perform competitively with original models and exhibit superior generalization to unseen dimensions, highlighting the importance of multidimensional pretraining for foundation models.

LGMar 2, 2025
Parameter Expanded Stochastic Gradient Markov Chain Monte Carlo

Hyunsu Kim, Giung Nam, Chulhee Yun et al.

Bayesian Neural Networks (BNNs) provide a promising framework for modeling predictive uncertainty and enhancing out-of-distribution robustness (OOD) by estimating the posterior distribution of network parameters. Stochastic Gradient Markov Chain Monte Carlo (SGMCMC) is one of the most powerful methods for scalable posterior sampling in BNNs, achieving efficiency by combining stochastic gradient descent with second-order Langevin dynamics. However, SGMCMC often suffers from limited sample diversity in practice, which affects uncertainty estimation and model performance. We propose a simple yet effective approach to enhance sample diversity in SGMCMC without the need for tempering or running multiple chains. Our approach reparameterizes the neural network by decomposing each of its weight matrices into a product of matrices, resulting in a sampling trajectory that better explores the target parameter space. This approach produces a more diverse set of samples, allowing faster mixing within the same computational budget. Notably, our sampler achieves these improvements without increasing the inference cost compared to the standard SGMCMC. Extensive experiments on image classification tasks, including OOD robustness, diversity, loss surface analyses, and a comparative study with Hamiltonian Monte Carlo, demonstrate the superiority of the proposed approach.

LGFeb 28, 2022
LobsDICE: Offline Learning from Observation via Stationary Distribution Correction Estimation

Geon-Hyeong Kim, Jongmin Lee, Youngsoo Jang et al.

We consider the problem of learning from observation (LfO), in which the agent aims to mimic the expert's behavior from the state-only demonstrations by experts. We additionally assume that the agent cannot interact with the environment but has access to the action-labeled transition data collected by some agents with unknown qualities. This offline setting for LfO is appealing in many real-world scenarios where the ground-truth expert actions are inaccessible and the arbitrary environment interactions are costly or risky. In this paper, we present LobsDICE, an offline LfO algorithm that learns to imitate the expert policy via optimization in the space of stationary distributions. Our algorithm solves a single convex minimization problem, which minimizes the divergence between the two state-transition distributions induced by the expert and the agent policy. Through an extensive set of offline LfO tasks, we show that LobsDICE outperforms strong baseline methods.

MLJul 3, 2021
Scale Mixtures of Neural Network Gaussian Processes

Hyungi Lee, Eunggu Yun, Hongseok Yang et al.

Recent works have revealed that infinitely-wide feed-forward or recurrent neural networks of any architecture correspond to Gaussian processes referred to as Neural Network Gaussian Processes (NNGPs). While these works have extended the class of neural networks converging to Gaussian processes significantly, however, there has been little focus on broadening the class of stochastic processes that such neural networks converge to. In this work, inspired by the scale mixture of Gaussian random variables, we propose the scale mixture of NNGPs for which we introduce a prior distribution on the scale of the last-layer parameters. We show that simply introducing a scale prior on the last-layer parameters can turn infinitely-wide neural networks of any architecture into a richer class of stochastic processes. With certain scale priors, we obtain heavy-tailed stochastic processes, and in the case of inverse gamma priors, we recover Student's $t$ processes. We further analyze the distributions of the neural networks initialized with our prior setting and trained with gradient descents and obtain similar results as for NNGPs. We present a practical posterior-inference algorithm for the scale mixture of NNGPs and empirically demonstrate its usefulness on regression and classification tasks. In particular, we show that in both tasks, the heavy-tailed stochastic processes obtained from our framework are robust to out-of-distribution data.

MLJun 18, 2021
$α$-Stable convergence of heavy-tailed infinitely-wide neural networks

Paul Jung, Hoil Lee, Jiho Lee et al.

We consider infinitely-wide multi-layer perceptrons (MLPs) which are limits of standard deep feed-forward neural networks. We assume that, for each layer, the weights of an MLP are initialized with i.i.d. samples from either a light-tailed (finite variance) or heavy-tailed distribution in the domain of attraction of a symmetric $α$-stable distribution, where $α\in(0,2]$ may depend on the layer. For the bias terms of the layer, we assume i.i.d. initializations with a symmetric $α$-stable distribution having the same $α$ parameter of that layer. We then extend a recent result of Favaro, Fortini, and Peluchetti (2020), to show that the vector of pre-activation values at all nodes of a given hidden layer converges in the limit, under a suitable scaling, to a vector of i.i.d. random variables with symmetric $α$-stable distributions.

LGMar 1, 2021
Meta-Learning an Inference Algorithm for Probabilistic Programs

Gwonsoo Che, Hongseok Yang

We present a meta-algorithm for learning a posterior-inference algorithm for restricted probabilistic programs. Our meta-algorithm takes a training set of probabilistic programs that describe models with observations, and attempts to learn an efficient method for inferring the posterior of a similar program. A key feature of our approach is the use of what we call a white-box inference algorithm that extracts information directly from model descriptions themselves, given as programs. Concretely, our white-box inference algorithm is equipped with multiple neural networks, one for each type of atomic command, and computes an approximate posterior of a given probabilistic program by analysing individual atomic commands in the program using these networks. The parameters of the networks are learnt from a training set by our meta-algorithm. We empirically demonstrate that the learnt inference algorithm generalises well to programs that are new in terms of both parameters and model structures, and report cases where our approach achieves greater test-time efficiency than alternative approaches such as HMC. The overall results show the promise as well as remaining challenges of our approach.

LGOct 1, 2020
Bayesian Policy Search for Stochastic Domains

David Tolpin, Yuan Zhou, Hongseok Yang

AI planning can be cast as inference in probabilistic models, and probabilistic programming was shown to be capable of policy search in partially observable domains. Prior work introduces policy search through Markov chain Monte Carlo in deterministic domains, as well as adapts black-box variational inference to stochastic domains, however not in the strictly Bayesian sense. In this work, we cast policy search in stochastic domains as a Bayesian inference problem and provide a scheme for encoding such problems as nested probabilistic programs. We argue that probabilistic programs for policy search in stochastic domains should involve nested conditioning, and provide an adaption of Lightweight Metropolis-Hastings (LMH) for robust inference in such programs. We apply the proposed scheme to stochastic domains and show that policies of similar quality are learned, despite a simpler and more general inference algorithm. We believe that the proposed variant of LMH is novel and applicable to a wider class of probabilistic programs with nested conditioning.

LGOct 1, 2020
Probabilistic Programs with Stochastic Conditioning

David Tolpin, Yuan Zhou, Tom Rainforth et al.

We tackle the problem of conditioning probabilistic programs on distributions of observable variables. Probabilistic programs are usually conditioned on samples from the joint data distribution, which we refer to as deterministic conditioning. However, in many real-life scenarios, the observations are given as marginal distributions, summary statistics, or samplers. Conventional probabilistic programming systems lack adequate means for modeling and inference in such scenarios. We propose a generalization of deterministic conditioning to stochastic conditioning, that is, conditioning on the marginal distribution of a variable taking a particular form. To this end, we first define the formal notion of stochastic conditioning and discuss its key properties. We then show how to perform inference in the presence of stochastic conditioning. We demonstrate potential usage of stochastic conditioning on several case studies which involve various kinds of stochastic conditioning and are difficult to solve otherwise. Although we present stochastic conditioning in the context of probabilistic programming, our formalization is general and applicable to other settings.

LGJun 12, 2020
On Correctness of Automatic Differentiation for Non-Differentiable Functions

Wonyeol Lee, Hangyeol Yu, Xavier Rival et al.

Differentiation lies at the core of many machine-learning algorithms, and is well-supported by popular autodiff systems, such as TensorFlow and PyTorch. Originally, these systems have been developed to compute derivatives of differentiable functions, but in practice, they are commonly applied to functions with non-differentiabilities. For instance, neural networks using ReLU define non-differentiable functions in general, but the gradients of losses involving those functions are computed using autodiff systems in practice. This status quo raises a natural question: are autodiff systems correct in any formal sense when they are applied to such non-differentiable functions? In this paper, we provide a positive answer to this question. Using counterexamples, we first point out flaws in often-used informal arguments, such as: non-differentiabilities arising in deep learning do not cause any issues because they form a measure-zero set. We then investigate a class of functions, called PAP functions, that includes nearly all (possibly non-differentiable) functions in deep learning nowadays. For these PAP functions, we propose a new type of derivatives, called intensional derivatives, and prove that these derivatives always exist and coincide with standard derivatives for almost all inputs. We also show that these intensional derivatives are what most autodiff systems compute or try to compute essentially. In this way, we formally establish the correctness of autodiff systems applied to non-differentiable functions.

LGMar 2, 2020
Stochastically Differentiable Probabilistic Programs

David Tolpin, Yuan Zhou, Hongseok Yang

Probabilistic programs with mixed support (both continuous and discrete latent random variables) commonly appear in many probabilistic programming systems (PPSs). However, the existence of the discrete random variables prohibits many basic gradient-based inference engines, which makes the inference procedure on such models particularly challenging. Existing PPSs either require the user to manually marginalize out the discrete variables or to perform a composing inference by running inference separately on discrete and continuous variables. The former is infeasible in most cases whereas the latter has some fundamental shortcomings. We present a novel approach to run inference efficiently and robustly in such programs using stochastic gradient Markov Chain Monte Carlo family of algorithms. We compare our stochastic gradient-based inference algorithm against conventional baselines in several important cases of probabilistic programs with mixed support, and demonstrate that it outperforms existing composing inference baselines and works almost as well as inference in marginalized versions of the programs, but with less programming effort and at a lower computation cost.

LGNov 22, 2019
Differentiable Algorithm for Marginalising Changepoints

Hyoungjin Lim, Gwonsoo Che, Wonyeol Lee et al.

We present an algorithm for marginalising changepoints in time-series models that assume a fixed number of unknown changepoints. Our algorithm is differentiable with respect to its inputs, which are the values of latent random variables other than changepoints. Also, it runs in time O(mn) where n is the number of time steps and m the number of changepoints, an improvement over a naive marginalisation method with O(n^m) time complexity. We derive the algorithm by identifying quantities related to this marginalisation problem, showing that these quantities satisfy recursive relationships, and transforming the relationships to an algorithm via dynamic programming. Since our algorithm is differentiable, it can be applied to convert a model non-differentiable due to changepoints to a differentiable one, so that the resulting models can be analysed using gradient-based inference or learning techniques. We empirically show the effectiveness of our algorithm in this application by tackling the posterior inference problem on synthetic and real-world data.

MLOct 29, 2019
Divide, Conquer, and Combine: a New Inference Strategy for Probabilistic Programs with Stochastic Support

Yuan Zhou, Hongseok Yang, Yee Whye Teh et al.

Universal probabilistic programming systems (PPSs) provide a powerful framework for specifying rich probabilistic models. They further attempt to automate the process of drawing inferences from these models, but doing this successfully is severely hampered by the wide range of non--standard models they can express. As a result, although one can specify complex models in a universal PPS, the provided inference engines often fall far short of what is required. In particular, we show that they produce surprisingly unsatisfactory performance for models where the support varies between executions, often doing no better than importance sampling from the prior. To address this, we introduce a new inference framework: Divide, Conquer, and Combine, which remains efficient for such models, and show how it can be implemented as an automated and generic PPS inference engine. We empirically demonstrate substantial performance improvements over existing approaches on three examples.

PLJul 20, 2019
Towards Verified Stochastic Variational Inference for Probabilistic Programs

Wonyeol Lee, Hangyeol Yu, Xavier Rival et al.

Probabilistic programming is the idea of writing models from statistics and machine learning using program notations and reasoning about these models using generic inference engines. Recently its combination with deep learning has been explored intensely, leading to the development of deep probabilistic programming languages such as Pyro. At the core of this development lie inference engines based on stochastic variational inference algorithms. When asked to find information about the posterior distribution of a model written in such a language, these algorithms convert this posterior-inference query into an optimisation problem and solve it approximately by gradient ascent. In this paper, we analyse one of the most fundamental and versatile variational inference algorithms, called score estimator, using tools from denotational semantics and program analysis. We formally express what this algorithm does on models denoted by programs, and expose implicit assumptions made by the algorithm. The violation of these assumptions may lead to an undefined optimisation objective or the loss of convergence guarantee of the optimisation process. We then describe rules for proving these assumptions, which can be automated by static program analyses. Some of our rules use nontrivial facts from continuous mathematics, and let us replace requirements about integrals in the assumptions, by conditions involving differentiation or boundedness, which are much easier to prove automatically. Following our general methodology, we have developed a static program analysis for Pyro that aims at discharging the assumption about what we call model-guide support match. Applied to the eight representative model-guide pairs from the Pyro webpage, our analysis finds a bug in one of these cases, reveals a non-standard use of an inference engine in another, and shows the assumptions are met in the remaining cases.

LGMar 6, 2019
LF-PPL: A Low-Level First Order Probabilistic Programming Language for Non-Differentiable Models

Yuan Zhou, Bradley J. Gram-Hansen, Tobias Kohn et al.

We develop a new Low-level, First-order Probabilistic Programming Language (LF-PPL) suited for models containing a mix of continuous, discrete, and/or piecewise-continuous variables. The key success of this language and its compilation scheme is in its ability to automatically distinguish parameters the density function is discontinuous with respect to, while further providing runtime checks for boundary crossings. This enables the introduction of new inference engines that are able to exploit gradient information, while remaining efficient for models which are not everywhere differentiable. We demonstrate this ability by incorporating a discontinuous Hamiltonian Monte Carlo (DHMC) inference engine that is able to deliver automated and efficient inference for non-differentiable models. Our system is backed up by a mathematical formalism that ensures that any model expressed in this language has a density with measure zero discontinuities to maintain the validity of the inference engine.

MLSep 27, 2018
An Introduction to Probabilistic Programming

Jan-Willem van de Meent, Brooks Paige, Hongseok Yang et al.

This book is a graduate-level introduction to probabilistic programming. It not only provides a thorough background for anyone wishing to use a probabilistic programming system, but also introduces the techniques needed to design and build these systems. It is aimed at people who have an undergraduate-level understanding of either or, ideally, both probabilistic machine learning and programming languages. We start with a discussion of model-based reasoning and explain why conditioning is a foundational computation central to the fields of probabilistic machine learning and artificial intelligence. We then introduce a first-order probabilistic programming language (PPL) whose programs correspond to graphical models with a known, finite, set of random variables. In the context of this PPL we introduce fundamental inference algorithms and describe how they can be implemented. We then turn to higher-order probabilistic programming languages. Programs in such languages can define models with dynamic computation graphs, which may not instantiate the same set of random variables in each execution. Inference requires methods that generate samples by repeatedly evaluating the program. Foundational algorithms for this kind of language are discussed in the context of an interface between program executions and an inference controller. Finally we consider the intersection of probabilistic and differentiable programming. We begin with a discussion of automatic differentiation, and how it can be used to implement efficient inference methods based on Hamiltonian Monte Carlo. We then discuss gradient-based maximum likelihood estimation in programs that are parameterized using neural networks, how to amortize inference using by learning neural approximations to the program posterior, and how language features impact the design of deep probabilistic programming systems.

COJun 25, 2018
Inference Trees: Adaptive Inference with Exploration

Tom Rainforth, Yuan Zhou, Xiaoyu Lu et al.

We introduce inference trees (ITs), a new class of inference methods that build on ideas from Monte Carlo tree search to perform adaptive sampling in a manner that balances exploration with exploitation, ensures consistency, and alleviates pathologies in existing adaptive methods. ITs adaptively sample from hierarchical partitions of the parameter space, while simultaneously learning these partitions in an online manner. This enables ITs to not only identify regions of high posterior mass, but also maintain uncertainty estimates to track regions where significant posterior mass may have been missed. ITs can be based on any inference method that provides a consistent estimate of the marginal likelihood. They are particularly effective when combined with sequential Monte Carlo, where they capture long-range dependencies and yield improvements beyond proposal adaptation alone.

LGJun 1, 2018
Reparameterization Gradient for Non-differentiable Models

Wonyeol Lee, Hangyeol Yu, Hongseok Yang

We present a new algorithm for stochastic variational inference that targets at models with non-differentiable densities. One of the key challenges in stochastic variational inference is to come up with a low-variance estimator of the gradient of a variational objective. We tackle the challenge by generalizing the reparameterization trick, one of the most effective techniques for addressing the variance issue for differentiable models, so that the trick works for non-differentiable models as well. Our algorithm splits the space of latent variables into regions where the density of the variables is differentiable, and their boundaries where the density may fail to be differentiable. For each differentiable region, the algorithm applies the standard reparameterization trick and estimates the gradient restricted to the region. For each potentially non-differentiable boundary, it uses a form of manifold sampling and computes the direction for variational parameters that, if followed, would increase the boundary's contribution to the variational objective. The sum of all the estimates becomes the gradient estimate of our algorithm. Our estimator enjoys the reduced variance of the reparameterization gradient while remaining unbiased even for non-differentiable models. The experiments with our preliminary implementation confirm the benefit of reduced variance and unbiasedness.

COApr 7, 2018
Hamiltonian Monte Carlo for Probabilistic Programs with Discontinuities

Bradley Gram-Hansen, Yuan Zhou, Tobias Kohn et al.

Hamiltonian Monte Carlo (HMC) is arguably the dominant statistical inference algorithm used in most popular "first-order differentiable" Probabilistic Programming Languages (PPLs). However, the fact that HMC uses derivative information causes complications when the target distribution is non-differentiable with respect to one or more of the latent variables. In this paper, we show how to use extensions to HMC to perform inference in probabilistic programs that contain discontinuities. To do this, we design a Simple first-order Probabilistic Programming Language (SPPL) that contains a sufficient set of language restrictions together with a compilation scheme. This enables us to preserve both the statistical and syntactic interpretation of if-else statements in the probabilistic program, within the scope of first-order PPLs. We also provide a corresponding mathematical formalism that ensures any joint density denoted in such a language has a suitably low measure of discontinuities.

COSep 18, 2017
On Nesting Monte Carlo Estimators

Tom Rainforth, Robert Cornish, Hongseok Yang et al.

Many problems in machine learning and statistics involve nested expectations and thus do not permit conventional Monte Carlo (MC) estimation. For such problems, one must nest estimators, such that terms in an outer estimator themselves involve calculation of a separate, nested, estimation. We investigate the statistical implications of nesting MC estimators, including cases of multiple levels of nesting, and establish the conditions under which they converge. We derive corresponding rates of convergence and provide empirical evidence that these rates are observed in practice. We further establish a number of pitfalls that can arise from naive nesting of MC estimators, provide guidelines about how these can be avoided, and lay out novel methods for reformulating certain classes of nested expectation problems into single expectations, leading to improved convergence rates. We demonstrate the applicability of our work by using our results to develop a new estimator for discrete Bayesian experimental design problems and derive error bounds for a class of variational objectives.

PLJan 10, 2017
A Convenient Category for Higher-Order Probability Theory

Chris Heunen, Ohad Kammar, Sam Staton et al.

Higher-order probabilistic programming languages allow programmers to write sophisticated models in machine learning and statistics in a succinct and structured way, but step outside the standard measure-theoretic formalization of probability theory. Programs may use both higher-order functions and continuous distributions, or even define a probability distribution on functions. But standard probability theory does not handle higher-order functions well: the category of measurable spaces is not cartesian closed. Here we introduce quasi-Borel spaces. We show that these spaces: form a new formalization of probability theory replacing measurable spaces; form a cartesian closed category and so support higher-order functions; form a well-pointed category and so support good proof principles for equational reasoning; and support continuous probability distributions. We demonstrate the use of quasi-Borel spaces for higher-order functions and probability by: showing that a well-known construction of probability theory involving random functions gains a cleaner expression; and generalizing de Finetti's theorem, that is a crucial theorem in probability theory, to quasi-Borel spaces.

CODec 3, 2016
On the Pitfalls of Nested Monte Carlo

Tom Rainforth, Robert Cornish, Hongseok Yang et al.

There is an increasing interest in estimating expectations outside of the classical inference framework, such as for models expressed as probabilistic programs. Many of these contexts call for some form of nested inference to be applied. In this paper, we analyse the behaviour of nested Monte Carlo (NMC) schemes, for which classical convergence proofs are insufficient. We give conditions under which NMC will converge, establish a rate of convergence, and provide empirical data that suggests that this rate is observable in practice. Finally, we prove that general-purpose nested inference schemes are inherently biased. Our results serve to warn of the dangers associated with naive composition of inference and models.

AIJun 14, 2016
Spreadsheet Probabilistic Programming

Mike Wu, Yura Perov, Frank Wood et al.

Spreadsheet workbook contents are simple programs. Because of this, probabilistic programming techniques can be used to perform Bayesian inversion of spreadsheet computations. What is more, existing execution engines in spreadsheet applications such as Microsoft Excel can be made to do this using only built-in functionality. We demonstrate this by developing a native Excel implementation of both a particle Markov Chain Monte Carlo variant and black-box variational inference for spreadsheet probabilistic programming. The resulting engine performs probabilistically coherent inference over spreadsheet computations, notably including spreadsheets that include user-defined black-box functions. Spreadsheet engines that choose to integrate the functionality we describe in this paper will give their users the ability to both easily develop probabilistic models and maintain them over time by including actuals via a simple user-interface mechanism. For spreadsheet end-users this would mean having access to efficient and probabilistically coherent probabilistic modeling and inference for use in all kinds of decision making under uncertainty.

PLJan 19, 2016
Semantics for probabilistic programming: higher-order functions, continuous distributions, and soft constraints

Sam Staton, Hongseok Yang, Chris Heunen et al.

We study the semantic foundation of expressive probabilistic programming languages, that support higher-order functions, continuous distributions, and soft constraints (such as Anglican, Church, and Venture). We define a metalanguage (an idealised version of Anglican) for probabilistic computation with the above features, develop both operational and denotational semantics, and prove soundness, adequacy, and termination. They involve measure theory, stochastic labelled transition systems, and functor categories, but admit intuitive computational readings, one of which views sampled random variables as dynamically allocated read-only variables. We apply our semantics to validate nontrivial equations underlying the correctness of certain compiler optimisations and inference algorithms such as sequential Monte Carlo simulation. The language enables defining probability distributions on higher-order functions, and we study their properties.

PLNov 5, 2015
Abstraction Refinement Guided by a Learnt Probabilistic Model

Radu Grigore, Hongseok Yang

The core challenge in designing an effective static program analysis is to find a good program abstraction -- one that retains only details relevant to a given query. In this paper, we present a new approach for automatically finding such an abstraction. Our approach uses a pessimistic strategy, which can optionally use guidance from a probabilistic model. Our approach applies to parametric static analyses implemented in Datalog, and is based on counterexample-guided abstraction refinement. For each untried abstraction, our probabilistic model provides a probability of success, while the size of the abstraction provides an estimate of its cost in terms of analysis time. Combining these two metrics, probability and cost, our refinement algorithm picks an optimal abstraction. Our probabilistic model is a variant of the Erdos-Renyi random graph model, and it is tunable by what we call hyperparameters. We present a method to learn good values for these hyperparameters, by observing past runs of the analysis on an existing codebase. We evaluate our approach on an object sensitive pointer analysis for Java programs, with two client analyses (PolySite and Downcast).

MLJan 27, 2015
Particle Gibbs with Ancestor Sampling for Probabilistic Programs

Jan-Willem van de Meent, Hongseok Yang, Vikash Mansinghka et al.

Particle Markov chain Monte Carlo techniques rank among current state-of-the-art methods for probabilistic program inference. A drawback of these techniques is that they rely on importance resampling, which results in degenerate particle trajectories and a low effective sample size for variables sampled early in a program. We here develop a formalism to adapt ancestor resampling, a technique that mitigates particle degeneracy, to the probabilistic programming setting. We present empirical results that demonstrate nontrivial performance gains.