Julia Werner

Julia Werner, Christoph Gerum, Moritz Reiber et al.

This paper presents a method to efficiently classify the gastroenterologic section of images derived from Video Capsule Endoscopy (VCE) studies by exploring the combination of a Convolutional Neural Network (CNN) for classification with the time-series analysis properties of a Hidden Markov Model (HMM). It is demonstrated that successive time-series analysis identifies and corrects errors in the CNN output. Our approach achieves an accuracy of $98.04\%$ on the Rhode Island (RI) Gastroenterology dataset. This allows for precise localization within the gastrointestinal (GI) tract while requiring only approximately 1M parameters and thus, provides a method suitable for low power devices

Julia Werner, Christoph Gerum, Jorg Nick et al.

Capsule endoscopy is a method to capture images of the gastrointestinal tract and screen for diseases which might remain hidden if investigated with standard endoscopes. Due to the limited size of a video capsule, embedding AI models directly into the capsule demands careful consideration of the model size and thus complicates anomaly detection in this field. Furthermore, the scarcity of available data in this domain poses an ongoing challenge to achieving effective anomaly detection. Thus, this work introduces an ensemble strategy to address this challenge in anomaly detection tasks in video capsule endoscopies, requiring only a small number of individual neural networks during both the training and inference phases. Ensemble learning combines the predictions of multiple independently trained neural networks. This has shown to be highly effective in enhancing both the accuracy and robustness of machine learning models. However, this comes at the cost of higher memory usage and increased computational effort, which quickly becomes prohibitive in many real-world applications. Instead of applying the same training algorithm to each individual network, we propose using various loss functions, drawn from the anomaly detection field, to train each network. The methods are validated on the two largest publicly available datasets for video capsule endoscopy images, the Galar and the Kvasir-Capsule dataset. We achieve an AUC score of 76.86% on the Kvasir-Capsule and an AUC score of 76.98% on the Galar dataset. Our approach outperforms current baselines with significantly fewer parameters across all models, which is a crucial step towards incorporating artificial intelligence into capsule endoscopies.

Julia Werner, Oliver Bause, Julius Oexle et al.

Video capsule endoscopy has become increasingly important for investigating the small intestine within the gastrointestinal tract. However, a persistent challenge remains the short battery lifetime of such compact sensor edge devices. Integrating artificial intelligence can help overcome this limitation by enabling intelligent real-time decision-making, thereby reducing the energy consumption and prolonging the battery life. However, this remains challenging due to data sparsity and the limited resources of the device restricting the overall model size. In this work, we introduce a multi-task neural network that combines the functionalities of precise self-localization within the gastrointestinal tract with the ability to detect anomalies in the small intestine within a single model. Throughout the development process, we consistently restricted the total number of parameters to ensure the feasibility to deploy such model in a small capsule. We report the first multi-task results using the recently published Galar dataset, integrating established multi-task methods and Viterbi decoding for subsequent time-series analysis. This outperforms current single-task models and represents a significant advance in AI-based approaches in this field. Our model achieves an accuracy of 93.63% on the localization task and an accuracy of 87.48% on the anomaly detection task. The approach requires only 1 million parameters while surpassing the current baselines.

Oliver Bause, Julia Werner, Paul Palomero Bernardo et al.

For many real-world applications involving low-power sensor edge devices deep neural networks used for image classification might not be suitable. This is due to their typically large model size and require- ment of operations often exceeding the capabilities of such resource lim- ited devices. Furthermore, camera sensors usually capture images with a Bayer color filter applied, which are subsequently converted to RGB images that are commonly used for neural network training. However, on resource-constrained devices, such conversions demands their share of energy and optimally should be skipped if possible. This work ad- dresses the need for hardware-suitable AI targeting sensor edge devices by means of the Video Capsule Endoscopy, an important medical proce- dure for the investigation of the small intestine, which is strongly limited by its battery lifetime. Accurate organ classification is performed with a final accuracy of 93.06% evaluated directly on Bayer images involv- ing a CNN with only 63,000 parameters and time-series analysis in the form of Viterbi decoding. Finally, the process of capturing images with a camera and raw image processing is demonstrated with a customized PULPissimo System-on-Chip with a RISC-V core and an ultra-low power hardware accelerator providing an energy-efficient AI-based image clas- sification approach requiring just 5.31 μJ per image. As a result, it is possible to save an average of 89.9% of energy before entering the small intestine compared to classic video capsules.