IVApr 15, 2024
ODFormer: Semantic Fundus Image Segmentation Using Transformer for Optic Nerve Head DetectionJiayi Wang, Yi-An Mao, Xiaoyu Ma et al.
Optic nerve head (ONH) detection has been a crucial area of study in ophthalmology for years. However, the significant discrepancy between fundus image datasets, each generated using a single type of fundus camera, poses challenges to the generalizability of ONH detection approaches developed based on semantic segmentation networks. Despite the numerous recent advancements in general-purpose semantic segmentation methods using convolutional neural networks (CNNs) and Transformers, there is currently a lack of benchmarks for these state-of-the-art (SoTA) networks specifically trained for ONH detection. Therefore, in this article, we make contributions from three key aspects: network design, the publication of a dataset, and the establishment of a comprehensive benchmark. Our newly developed ONH detection network, referred to as ODFormer, is based upon the Swin Transformer architecture and incorporates two novel components: a multi-scale context aggregator and a lightweight bidirectional feature recalibrator. Our published large-scale dataset, known as TongjiU-DROD, provides multi-resolution fundus images for each participant, captured using two distinct types of cameras. Our established benchmark involves three datasets: DRIONS-DB, DRISHTI-GS1, and TongjiU-DROD, created by researchers from different countries and containing fundus images captured from participants of diverse races and ages. Extensive experimental results demonstrate that our proposed ODFormer outperforms other state-of-the-art (SoTA) networks in terms of performance and generalizability. Our dataset and source code are publicly available at mias.group/ODFormer.
LGMay 15, 2024
Dual-Segment Clustering Strategy for Hierarchical Federated Learning in Heterogeneous Wireless EnvironmentsPengcheng Sun, Erwu Liu, Wei Ni et al.
Non-independent and identically distributed (Non- IID) data adversely affects federated learning (FL) while heterogeneity in communication quality can undermine the reliability of model parameter transmission, potentially degrading wireless FL convergence. This paper proposes a novel dual-segment clustering (DSC) strategy that jointly addresses communication and data heterogeneity in FL. This is achieved by defining a new signal-to-noise ratio (SNR) matrix and information quantity matrix to capture the communication and data heterogeneity, respectively. The celebrated affinity propagation algorithm is leveraged to iteratively refine the clustering of clients based on the newly defined matrices effectively enhancing model aggregation in heterogeneous environments. The convergence analysis and experimental results show that the DSC strategy can improve the convergence rate of wireless FL and demonstrate superior accuracy in heterogeneous environments compared to classical clustering methods.
IVDec 24, 2023
TJDR: A High-Quality Diabetic Retinopathy Pixel-Level Annotation DatasetJingxin Mao, Xiaoyu Ma, Yanlong Bi et al.
Diabetic retinopathy (DR), as a debilitating ocular complication, necessitates prompt intervention and treatment. Despite the effectiveness of artificial intelligence in aiding DR grading, the progression of research toward enhancing the interpretability of DR grading through precise lesion segmentation faces a severe hindrance due to the scarcity of pixel-level annotated DR datasets. To mitigate this, this paper presents and delineates TJDR, a high-quality DR pixel-level annotation dataset, which comprises 561 color fundus images sourced from the Tongji Hospital Affiliated to Tongji University. These images are captured using diverse fundus cameras including Topcon's TRC-50DX and Zeiss CLARUS 500, exhibit high resolution. For the sake of adhering strictly to principles of data privacy, the private information of images is meticulously removed while ensuring clarity in displaying anatomical structures such as the optic disc, retinal blood vessels, and macular fovea. The DR lesions are annotated using the Labelme tool, encompassing four prevalent DR lesions: Hard Exudates (EX), Hemorrhages (HE), Microaneurysms (MA), and Soft Exudates (SE), labeled respectively from 1 to 4, with 0 representing the background. Significantly, experienced ophthalmologists conduct the annotation work with rigorous quality assurance, culminating in the construction of this dataset. This dataset has been partitioned into training and testing sets and publicly released to contribute to advancements in the DR lesion segmentation research community.