Zhen Xu

Yuan Xue, Denny Zhou, Nan Du et al.

Capturing the inter-dependencies among multiple types of clinically-critical events is critical not only to accurate future event prediction, but also to better treatment planning. In this work, we propose a deep latent state-space generative model to capture the interactions among different types of correlated clinical events (e.g., kidney failure, mortality) by explicitly modeling the temporal dynamics of patients' latent states. Based on these learned patient states, we further develop a new general discrete-time formulation of the hazard rate function to estimate the survival distribution of patients with significantly improved accuracy. Extensive evaluations over real EMR data show that our proposed model compares favorably to various state-of-the-art baselines. Furthermore, our method also uncovers meaningful insights about the latent correlations among mortality and different types of organ failures.

Zhen Xu, Wei-Wei Tu, Isabelle Guyon

Analyzing better time series with limited human effort is of interest to academia and industry. Driven by business scenarios, we organized the first Automated Time Series Regression challenge (AutoSeries) for the WSDM Cup 2020. We present its design, analysis, and post-hoc experiments. The code submission requirement precluded participants from any manual intervention, testing automated machine learning capabilities of solutions, across many datasets, under hardware and time limitations. We prepared 10 datasets from diverse application domains (sales, power consumption, air quality, traffic, and parking), featuring missing data, mixed continuous and categorical variables, and various sampling rates. Each dataset was split into a training and a test sequence (which was streamed, allowing models to continuously adapt). The setting of time series regression, differs from classical forecasting in that covariates at the present time are known. Great strides were made by participants to tackle this AutoSeries problem, as demonstrated by the jump in performance from the sample submission, and post-hoc comparisons with AutoGluon. Simple yet effective methods were used, based on feature engineering, LightGBM, and random search hyper-parameter tuning, addressing all aspects of the challenge. Our post-hoc analyses revealed that providing additional time did not yield significant improvements. The winners' code was open-sourced https://github.com/NehzUx/AutoSeries.

Zhen Xu, David R. So, Andrew M. Dai

One important challenge of applying deep learning to electronic health records (EHR) is the complexity of their multimodal structure. EHR usually contains a mixture of structured (codes) and unstructured (free-text) data with sparse and irregular longitudinal features -- all of which doctors utilize when making decisions. In the deep learning regime, determining how different modality representations should be fused together is a difficult problem, which is often addressed by handcrafted modeling and intuition. In this work, we extend state-of-the-art neural architecture search (NAS) methods and propose MUltimodal Fusion Architecture SeArch (MUFASA) to simultaneously search across multimodal fusion strategies and modality-specific architectures for the first time. We demonstrate empirically that our MUFASA method outperforms established unimodal NAS on public EHR data with comparable computation costs. In addition, MUFASA produces architectures that outperform Transformer and Evolved Transformer. Compared with these baselines on CCS diagnosis code prediction, our discovered models improve top-5 recall from 0.88 to 0.91 and demonstrate the ability to generalize to other EHR tasks. Studying our top architecture in depth, we provide empirical evidence that MUFASA's improvements are derived from its ability to both customize modeling for each data modality and find effective fusion strategies.

Rongjun Qin, Songyi Gao, Xingyuan Zhang et al.

Offline reinforcement learning (RL) aims at learning a good policy from a batch of collected data, without extra interactions with the environment during training. However, current offline RL benchmarks commonly have a large reality gap, because they involve large datasets collected by highly exploratory policies, and the trained policy is directly evaluated in the environment. In real-world situations, running a highly exploratory policy is prohibited to ensure system safety, the data is commonly very limited, and a trained policy should be well validated before deployment. In this paper, we present a near real-world offline RL benchmark, named NeoRL, which contains datasets from various domains with controlled sizes, and extra test datasets for policy validation. We evaluate existing offline RL algorithms on NeoRL and argue that the performance of a policy should also be compared with the deterministic version of the behavior policy, instead of the dataset reward. The empirical results demonstrate that the tested offline RL algorithms become less competitive to the deterministic policy on many datasets, and the offline policy evaluation hardly helps. The NeoRL suit can be found at http://polixir.ai/research/neorl. We hope this work will shed some light on future research and draw more attention when deploying RL in real-world systems.

Jingsong Wang, Tom Ko, Zhen Xu et al.

The AutoSpeech challenge calls for automated machine learning (AutoML) solutions to automate the process of applying machine learning to speech processing tasks. These tasks, which cover a large variety of domains, will be shown to the automated system in a random order. Each time when the tasks are switched, the information of the new task will be hinted with its corresponding training set. Thus, every submitted solution should contain an adaptation routine which adapts the system to the new task. Compared to the first edition, the 2020 edition includes advances of 1) more speech tasks, 2) noisier data in each task, 3) a modified evaluation metric. This paper outlines the challenge and describe the competition protocol, datasets, evaluation metric, starting kit, and baseline systems.

Yuan Xue, Denny Zhou, Nan Du et al.

Clinical forecasting based on electronic medical records (EMR) can uncover the temporal correlations between patients' conditions and outcomes from sequences of longitudinal clinical measurements. In this work, we propose an intervention-augmented deep state space generative model to capture the interactions among clinical measurements and interventions by explicitly modeling the dynamics of patients' latent states. Based on this model, we are able to make a joint prediction of the trajectories of future observations and interventions. Empirical evaluations show that our proposed model compares favorably to several state-of-the-art methods on real EMR data.

Zhen Xu, Andrew M. Dai, Jonas Kemp et al.

The learning rate is one of the most important hyper-parameters for model training and generalization. However, current hand-designed parametric learning rate schedules offer limited flexibility and the predefined schedule may not match the training dynamics of high dimensional and non-convex optimization problems. In this paper, we propose a reinforcement learning based framework that can automatically learn an adaptive learning rate schedule by leveraging the information from past training histories. The learning rate dynamically changes based on the current training dynamics. To validate this framework, we conduct experiments with different neural network architectures on the Fashion MINIST and CIFAR10 datasets. Experimental results show that the auto-learned learning rate controller can achieve better test results. In addition, the trained controller network is generalizable -- able to be trained on one data set and transferred to new problems.

Edward Choi, Zhen Xu, Yujia Li et al.

Effective modeling of electronic health records (EHR) is rapidly becoming an important topic in both academia and industry. A recent study showed that using the graphical structure underlying EHR data (e.g. relationship between diagnoses and treatments) improves the performance of prediction tasks such as heart failure prediction. However, EHR data do not always contain complete structure information. Moreover, when it comes to claims data, structure information is completely unavailable to begin with. Under such circumstances, can we still do better than just treating EHR data as a flat-structured bag-of-features? In this paper, we study the possibility of jointly learning the hidden structure of EHR while performing supervised prediction tasks on EHR data. Specifically, we discuss that Transformer is a suitable basis model to learn the hidden EHR structure, and propose Graph Convolutional Transformer, which uses data statistics to guide the structure learning process. The proposed model consistently outperformed previous approaches empirically, on both synthetic data and publicly available EHR data, for various prediction tasks such as graph reconstruction and readmission prediction, indicating that it can serve as an effective general-purpose representation learning algorithm for EHR data.