CVMar 29, 2023
Unsupervised Anomaly Detection with Local-Sensitive VQVAE and Global-Sensitive TransformersMingqing Wang, Jiawei Li, Zhenyang Li et al.
Unsupervised anomaly detection (UAD) has been widely implemented in industrial and medical applications, which reduces the cost of manual annotation and improves efficiency in disease diagnosis. Recently, deep auto-encoder with its variants has demonstrated its advantages in many UAD scenarios. Training on the normal data, these models are expected to locate anomalies by producing higher reconstruction error for the abnormal areas than the normal ones. However, this assumption does not always hold because of the uncontrollable generalization capability. To solve this problem, we present LSGS, a method that builds on Vector Quantised-Variational Autoencoder (VQVAE) with a novel aggregated codebook and transformers with global attention. In this work, the VQVAE focus on feature extraction and reconstruction of images, and the transformers fit the manifold and locate anomalies in the latent space. Then, leveraging the generated encoding sequences that conform to a normal distribution, we can reconstruct a more accurate image for locating the anomalies. Experiments on various datasets demonstrate the effectiveness of the proposed method.
IVJul 15, 2022Code
Towards Better Dermoscopic Image Feature Representation Learning for Melanoma ClassificationChengHui Yu, MingKang Tang, ShengGe Yang et al.
Deep learning-based melanoma classification with dermoscopic images has recently shown great potential in automatic early-stage melanoma diagnosis. However, limited by the significant data imbalance and obvious extraneous artifacts, i.e., the hair and ruler markings, discriminative feature extraction from dermoscopic images is very challenging. In this study, we seek to resolve these problems respectively towards better representation learning for lesion features. Specifically, a GAN-based data augmentation (GDA) strategy is adapted to generate synthetic melanoma-positive images, in conjunction with the proposed implicit hair denoising (IHD) strategy. Wherein the hair-related representations are implicitly disentangled via an auxiliary classifier network and reversely sent to the melanoma-feature extraction backbone for better melanoma-specific representation learning. Furthermore, to train the IHD module, the hair noises are additionally labeled on the ISIC2020 dataset, making it the first large-scale dermoscopic dataset with annotation of hair-like artifacts. Extensive experiments demonstrate the superiority of the proposed framework as well as the effectiveness of each component. The improved dataset publicly avaliable at https://github.com/kirtsy/DermoscopicDataset.
LGJul 20, 2023
Intelligent model for offshore China sea fog forecastingYanfei Xiang, Qinghong Zhang, Mingqing Wang et al.
Accurate and timely prediction of sea fog is very important for effectively managing maritime and coastal economic activities. Given the intricate nature and inherent variability of sea fog, traditional numerical and statistical forecasting methods are often proven inadequate. This study aims to develop an advanced sea fog forecasting method embedded in a numerical weather prediction model using the Yangtze River Estuary (YRE) coastal area as a case study. Prior to training our machine learning model, we employ a time-lagged correlation analysis technique to identify key predictors and decipher the underlying mechanisms driving sea fog occurrence. In addition, we implement ensemble learning and a focal loss function to address the issue of imbalanced data, thereby enhancing the predictive ability of our model. To verify the accuracy of our method, we evaluate its performance using a comprehensive dataset spanning one year, which encompasses both weather station observations and historical forecasts. Remarkably, our machine learning-based approach surpasses the predictive performance of two conventional methods, the weather research and forecasting nonhydrostatic mesoscale model (WRF-NMM) and the algorithm developed by the National Oceanic and Atmospheric Administration (NOAA) Forecast Systems Laboratory (FSL). Specifically, in regard to predicting sea fog with a visibility of less than or equal to 1 km with a lead time of 60 hours, our methodology achieves superior results by increasing the probability of detection (POD) while simultaneously reducing the false alarm ratio (FAR).
55.9BMMay 12Code
Learning Protein Structure-Function Relationships through Knowledge-guided Representation DecompositionMingqing Wang, Zhiwei Nie, Athanasios V. Vasilakos et al.
Proteins encode diverse functions within complex three-dimensional structures, yet most deep learning representations remain highly entangled, obscuring the biophysical signals that underlie function. Here we introduce ProtDiS, a knowledge-guided framework that decomposes pretrained protein micro-environment embeddings into biologically grounded and task-relevant dimensions. Inspired by the information bottleneck principle, ProtDiS learns representations that balance informativeness and compression, yielding structural features that are more specific, independent, and information-efficient, and achieving consistent improvements across twelve downstream tasks, with the largest gains under structure-based splits. Protein- and residue-level analyses further show that ProtDiS differentiates proteins with similar folds but divergent functions and captures fine-grained biophysical signals critical. These findings suggest that knowledge-guided decomposition provides a general and interpretable approach for structuring latent spaces in protein structural modeling. The source code and implementation details are publicly available at https://github.com/AI-HPC-Research-Team/ProtDiS.
CVMay 12, 2024
Point Resampling and Ray Transformation Aid to Editable NeRF ModelsZhenyang Li, Zilong Chen, Feifan Qu et al.
In NeRF-aided editing tasks, object movement presents difficulties in supervision generation due to the introduction of variability in object positions. Moreover, the removal operations of certain scene objects often lead to empty regions, presenting challenges for NeRF models in inpainting them effectively. We propose an implicit ray transformation strategy, allowing for direct manipulation of the 3D object's pose by operating on the neural-point in NeRF rays. To address the challenge of inpainting potential empty regions, we present a plug-and-play inpainting module, dubbed differentiable neural-point resampling (DNR), which interpolates those regions in 3D space at the original ray locations within the implicit space, thereby facilitating object removal & scene inpainting tasks. Importantly, employing DNR effectively narrows the gap between ground truth and predicted implicit features, potentially increasing the mutual information (MI) of the features across rays. Then, we leverage DNR and ray transformation to construct a point-based editable NeRF pipeline PR^2T-NeRF. Results primarily evaluated on 3D object removal & inpainting tasks indicate that our pipeline achieves state-of-the-art performance. In addition, our pipeline supports high-quality rendering visualization for diverse editing operations without necessitating extra supervision.