Nannan Wu

Nannan Wu, Li Yu, Xin Yang et al.

Federated learning (FL), training deep models from decentralized data without privacy leakage, has shown great potential in medical image computing recently. However, considering the ubiquitous class imbalance in medical data, FL can exhibit performance degradation, especially for minority classes (e.g. rare diseases). Existing methods towards this problem mainly focus on training a balanced classifier to eliminate class prior bias among classes, but neglect to explore better representation to facilitate classification performance. In this paper, we present a privacy-preserving FL method named FedIIC to combat class imbalance from two perspectives: feature learning and classifier learning. In feature learning, two levels of contrastive learning are designed to extract better class-specific features with imbalanced data in FL. In classifier learning, per-class margins are dynamically set according to real-time difficulty and class priors, which helps the model learn classes equally. Experimental results on publicly-available datasets demonstrate the superior performance of FedIIC in dealing with both real-world and simulated multi-source medical imaging data under class imbalance. Code is available at https://github.com/wnn2000/FedIIC.

Yangyang Xiang, Nannan Wu, Li Yu et al.

Federated learning has emerged as a compelling paradigm for medical image segmentation, particularly in light of increasing privacy concerns. However, most of the existing research relies on relatively stringent assumptions regarding the uniformity and completeness of annotations across clients. Contrary to this, this paper highlights a prevalent challenge in medical practice: incomplete annotations. Such annotations can introduce incorrectly labeled pixels, potentially undermining the performance of neural networks in supervised learning. To tackle this issue, we introduce a novel solution, named FedIA. Our insight is to conceptualize incomplete annotations as noisy data (i.e., low-quality data), with a focus on mitigating their adverse effects. We begin by evaluating the completeness of annotations at the client level using a designed indicator. Subsequently, we enhance the influence of clients with more comprehensive annotations and implement corrections for incomplete ones, thereby ensuring that models are trained on accurate data. Our method's effectiveness is validated through its superior performance on two extensively used medical image segmentation datasets, outperforming existing solutions. The code is available at https://github.com/HUSTxyy/FedIA.

Nannan Wu, Ning Zhang, Wenjun Wang et al.

Anomaly subgraph detection has been widely used in various applications, ranging from cyber attack in computer networks to malicious activities in social networks. Despite an increasing need for federated anomaly detection across multiple attributed networks, only a limited number of approaches are available for this problem. Federated anomaly detection faces two major challenges. One is that isolated data in most industries are restricted share with others for data privacy and security. The other is most of the centralized approaches training based on data integration. The main idea of federated anomaly detection is aligning private anomalies from local data owners on the public anomalies from the attributed network in the server through public anomalies to federate local anomalies. In each private attributed network, the detected anomaly subgraph is aligned with an anomaly subgraph in the public attributed network. The significant public anomaly subgraphs are selected for federated private anomalies while preventing local private data leakage. The proposed algorithm FadMan is a vertical federated learning framework for public node aligned with many private nodes of different features, and is validated on two tasks correlated anomaly detection on multiple attributed networks and anomaly detection on an attributeless network using five real-world datasets. In the first scenario, FadMan outperforms competitive methods by at least 12% accuracy at 10% noise level. In the second scenario, by analyzing the distribution of abnormal nodes, we find that the nodes of traffic anomalies are associated with the event of postgraduate entrance examination on the same day.

Nannan Wu, Zhaobin Sun, Zengqiang Yan et al.

Federated learning (FL) has emerged as a promising paradigm for training segmentation models on decentralized medical data, owing to its privacy-preserving property. However, existing research overlooks the prevalent annotation noise encountered in real-world medical datasets, which limits the performance ceilings of FL. In this paper, we, for the first time, identify and tackle this problem. For problem formulation, we propose a contour evolution for modeling non-independent and identically distributed (Non-IID) noise across pixels within each client and then extend it to the case of multi-source data to form a heterogeneous noise model (i.e., Non-IID annotation noise across clients). For robust learning from annotations with such two-level Non-IID noise, we emphasize the importance of data quality in model aggregation, allowing high-quality clients to have a greater impact on FL. To achieve this, we propose Federated learning with Annotation quAlity-aware AggregatIon, named FedA3I, by introducing a quality factor based on client-wise noise estimation. Specifically, noise estimation at each client is accomplished through the Gaussian mixture model and then incorporated into model aggregation in a layer-wise manner to up-weight high-quality clients. Extensive experiments on two real-world medical image segmentation datasets demonstrate the superior performance of FedA$^3$I against the state-of-the-art approaches in dealing with cross-client annotation noise. The code is available at https://github.com/wnn2000/FedAAAI.

Xuefeng Jiang, Jia Li, Nannan Wu et al.

Robustness to label noise within data is a significant challenge in federated learning (FL). From the data-centric perspective, the data quality of distributed datasets can not be guaranteed since annotations of different clients contain complicated label noise of varying degrees, which causes the performance degradation. There have been some early attempts to tackle noisy labels in FL. However, there exists a lack of benchmark studies on comprehensively evaluating their practical performance under unified settings. To this end, we propose the first benchmark study FNBench to provide an experimental investigation which considers three diverse label noise patterns covering synthetic label noise, imperfect human-annotation errors and systematic errors. Our evaluation incorporates eighteen state-of-the-art methods over five image recognition datasets and one text classification dataset. Meanwhile, we provide observations to understand why noisy labels impair FL, and additionally exploit a representation-aware regularization method to enhance the robustness of existing methods against noisy labels based on our observations. Finally, we discuss the limitations of this work and propose three-fold future directions. To facilitate related communities, our source code is open-sourced at https://github.com/Sprinter1999/FNBench.

Zhaobin Sun, Nannan Wu, Junjie Shi et al.

Cross-silo federated learning (FL) enables decentralized organizations to collaboratively train models while preserving data privacy and has made significant progress in medical image classification. One common assumption is task homogeneity where each client has access to all classes during training. However, in clinical practice, given a multi-label classification task, constrained by the level of medical knowledge and the prevalence of diseases, each institution may diagnose only partial categories, resulting in task heterogeneity. How to pursue effective multi-label medical image classification under task heterogeneity is under-explored. In this paper, we first formulate such a realistic label missing setting in the multi-label FL domain and propose a two-stage method FedMLP to combat class missing from two aspects: pseudo label tagging and global knowledge learning. The former utilizes a warmed-up model to generate class prototypes and select samples with high confidence to supplement missing labels, while the latter uses a global model as a teacher for consistency regularization to prevent forgetting missing class knowledge. Experiments on two publicly-available medical datasets validate the superiority of FedMLP against the state-of-the-art both federated semi-supervised and noisy label learning approaches under task heterogeneity. Code is available at https://github.com/szbonaldo/FedMLP.

Nannan Wu, Li Yu, Xuefeng Jiang et al.

Federated noisy label learning (FNLL) is emerging as a promising tool for privacy-preserving multi-source decentralized learning. Existing research, relying on the assumption of class-balanced global data, might be incapable to model complicated label noise, especially in medical scenarios. In this paper, we first formulate a new and more realistic federated label noise problem where global data is class-imbalanced and label noise is heterogeneous, and then propose a two-stage framework named FedNoRo for noise-robust federated learning. Specifically, in the first stage of FedNoRo, per-class loss indicators followed by Gaussian Mixture Model are deployed for noisy client identification. In the second stage, knowledge distillation and a distance-aware aggregation function are jointly adopted for noise-robust federated model updating. Experimental results on the widely-used ICH and ISIC2019 datasets demonstrate the superiority of FedNoRo against the state-of-the-art FNLL methods for addressing class imbalance and label noise heterogeneity in real-world FL scenarios.