Yun Yvonna Li

El Amine Cherrat, Iordanis Kerenidis, Natansh Mathur et al.

In this work, quantum transformers are designed and analysed in detail by extending the state-of-the-art classical transformer neural network architectures known to be very performant in natural language processing and image analysis. Building upon the previous work, which uses parametrised quantum circuits for data loading and orthogonal neural layers, we introduce three types of quantum transformers for training and inference, including a quantum transformer based on compound matrices, which guarantees a theoretical advantage of the quantum attention mechanism compared to their classical counterpart both in terms of asymptotic run time and the number of model parameters. These quantum architectures can be built using shallow quantum circuits and produce qualitatively different classification models. The three proposed quantum attention layers vary on the spectrum between closely following the classical transformers and exhibiting more quantum characteristics. As building blocks of the quantum transformer, we propose a novel method for loading a matrix as quantum states as well as two new trainable quantum orthogonal layers adaptable to different levels of connectivity and quality of quantum computers. We performed extensive simulations of the quantum transformers on standard medical image datasets that showed competitively, and at times better performance compared to the classical benchmarks, including the best-in-class classical vision transformers. The quantum transformers we trained on these small-scale datasets require fewer parameters compared to standard classical benchmarks. Finally, we implemented our quantum transformers on superconducting quantum computers and obtained encouraging results for up to six qubit experiments.

Alvaro Gomariz, Huanxiang Lu, Yun Yvonna Li et al.

Accurate segmentation of retinal fluids in 3D Optical Coherence Tomography images is key for diagnosis and personalized treatment of eye diseases. While deep learning has been successful at this task, trained supervised models often fail for images that do not resemble labeled examples, e.g. for images acquired using different devices. We hereby propose a novel semi-supervised learning framework for segmentation of volumetric images from new unlabeled domains. We jointly use supervised and contrastive learning, also introducing a contrastive pairing scheme that leverages similarity between nearby slices in 3D. In addition, we propose channel-wise aggregation as an alternative to conventional spatial-pooling aggregation for contrastive feature map projection. We evaluate our methods for domain adaptation from a (labeled) source domain to an (unlabeled) target domain, each containing images acquired with different acquisition devices. In the target domain, our method achieves a Dice coefficient 13.8% higher than SimCLR (a state-of-the-art contrastive framework), and leads to results comparable to an upper bound with supervised training in that domain. In the source domain, our model also improves the results by 5.4% Dice, by successfully leveraging information from many unlabeled images.

Alvaro Gomariz, Yusuke Kikuchi, Yun Yvonna Li et al.

Despite their effectiveness, current deep learning models face challenges with images coming from different domains with varying appearance and content. We introduce SegCLR, a versatile framework designed to segment images across different domains, employing supervised and contrastive learning simultaneously to effectively learn from both labeled and unlabeled data. We demonstrate the superior performance of SegCLR through a comprehensive evaluation involving three diverse clinical datasets of 3D retinal Optical Coherence Tomography (OCT) images, for the slice-wise segmentation of fluids with various network configurations and verification across 10 different network initializations. In an unsupervised domain adaptation context, SegCLR achieves results on par with a supervised upper-bound model trained on the intended target domain. Notably, we discover that the segmentation performance of SegCLR framework is marginally impacted by the abundance of unlabeled data from the target domain, thereby we also propose an effective domain generalization extension of SegCLR, known also as zero-shot domain adaptation, which eliminates the need for any target domain information. This shows that our proposed addition of contrastive loss in standard supervised training for segmentation leads to superior models, inherently more generalizable to both in- and out-of-domain test data. We additionally propose a pragmatic solution for SegCLR deployment in realistic scenarios with multiple domains containing labeled data. Accordingly, our framework pushes the boundaries of deep-learning based segmentation in multi-domain applications, regardless of data availability - labeled, unlabeled, or nonexistent.