Satoshi Matsuoka

Steven Farrell, Murali Emani, Jacob Balma et al.

Scientific communities are increasingly adopting machine learning and deep learning models in their applications to accelerate scientific insights. High performance computing systems are pushing the frontiers of performance with a rich diversity of hardware resources and massive scale-out capabilities. There is a critical need to understand fair and effective benchmarking of machine learning applications that are representative of real-world scientific use cases. MLPerf is a community-driven standard to benchmark machine learning workloads, focusing on end-to-end performance metrics. In this paper, we introduce MLPerf HPC, a benchmark suite of large-scale scientific machine learning training applications driven by the MLCommons Association. We present the results from the first submission round, including a diverse set of some of the world's largest HPC systems. We develop a systematic framework for their joint analysis and compare them in terms of data staging, algorithmic convergence, and compute performance. As a result, we gain a quantitative understanding of optimizations on different subsystems such as staging and on-node loading of data, compute-unit utilization, and communication scheduling, enabling overall $>10 \times$ (end-to-end) performance improvements through system scaling. Notably, our analysis shows a scale-dependent interplay between the dataset size, a system's memory hierarchy, and training convergence that underlines the importance of near-compute storage. To overcome the data-parallel scalability challenge at large batch sizes, we discuss specific learning techniques and hybrid data-and-model parallelism that are effective on large systems. We conclude by characterizing each benchmark with respect to low-level memory, I/O, and network behavior to parameterize extended roofline performance models in future rounds.

Mohamed Wahib, Haoyu Zhang, Truong Thao Nguyen et al.

The dedicated memory of hardware accelerators can be insufficient to store all weights and/or intermediate states of large deep learning models. Although model parallelism is a viable approach to reduce the memory pressure issue, significant modification of the source code and considerations for algorithms are required. An alternative solution is to use out-of-core methods instead of, or in addition to, data parallelism. We propose a performance model based on the concurrency analysis of out-of-core training behavior, and derive a strategy that combines layer swapping and redundant recomputing. We achieve an average of 1.52x speedup in six different models over the state-of-the-art out-of-core methods. We also introduce the first method to solve the challenging problem of out-of-core multi-node training by carefully pipelining gradient exchanges and performing the parameter updates on the host. Our data parallel out-of-core solution can outperform complex hybrid model parallelism in training large models, e.g. Megatron-LM and Turning-NLG.

Yosuke Oyama, Naoya Maruyama, Nikoli Dryden et al.

We present scalable hybrid-parallel algorithms for training large-scale 3D convolutional neural networks. Deep learning-based emerging scientific workflows often require model training with large, high-dimensional samples, which can make training much more costly and even infeasible due to excessive memory usage. We solve these challenges by extensively applying hybrid parallelism throughout the end-to-end training pipeline, including both computations and I/O. Our hybrid-parallel algorithm extends the standard data parallelism with spatial parallelism, which partitions a single sample in the spatial domain, realizing strong scaling beyond the mini-batch dimension with a larger aggregated memory capacity. We evaluate our proposed training algorithms with two challenging 3D CNNs, CosmoFlow and 3D U-Net. Our comprehensive performance studies show that good weak and strong scaling can be achieved for both networks using up 2K GPUs. More importantly, we enable training of CosmoFlow with much larger samples than previously possible, realizing an order-of-magnitude improvement in prediction accuracy.

Kazuki Osawa, Yohei Tsuji, Yuichiro Ueno et al.

Large-scale distributed training of deep neural networks suffer from the generalization gap caused by the increase in the effective mini-batch size. Previous approaches try to solve this problem by varying the learning rate and batch size over epochs and layers, or some ad hoc modification of the batch normalization. We propose an alternative approach using a second-order optimization method that shows similar generalization capability to first-order methods, but converges faster and can handle larger mini-batches. To test our method on a benchmark where highly optimized first-order methods are available as references, we train ResNet-50 on ImageNet. We converged to 75% Top-1 validation accuracy in 35 epochs for mini-batch sizes under 16,384, and achieved 75% even with a mini-batch size of 131,072, which took only 978 iterations.

Yosuke Oyama, Tal Ben-Nun, Torsten Hoefler et al.

NVIDIA cuDNN is a low-level library that provides GPU kernels frequently used in deep learning. Specifically, cuDNN implements several equivalent convolution algorithms, whose performance and memory footprint may vary considerably, depending on the layer dimensions. When an algorithm is automatically selected by cuDNN, the decision is performed on a per-layer basis, and thus it often resorts to slower algorithms that fit the workspace size constraints. We present μ-cuDNN, a transparent wrapper library for cuDNN, which divides layers' mini-batch computation into several micro-batches. Based on Dynamic Programming and Integer Linear Programming, μ-cuDNN enables faster algorithms by decreasing the workspace requirements. At the same time, μ-cuDNN keeps the computational semantics unchanged, so that it decouples statistical efficiency from the hardware efficiency safely. We demonstrate the effectiveness of μ-cuDNN over two frameworks, Caffe and TensorFlow, achieving speedups of 1.63x for AlexNet and 1.21x for ResNet-18 on P100-SXM2 GPU. These results indicate that using micro-batches can seamlessly increase the performance of deep learning, while maintaining the same memory footprint.