Yuewen Sun

Yongqiang Chen, Guangyi Chen, Yuewen Sun et al.

Systematic comparisons between current situations and structurally similar past events in the historical, i.e., historical analogies, is among the most powerful tools for foresight analysis. In this work, we present a new task called Analogical Deep Research (ADR) to Large Language Model (LLM) agents and construct the first ADR benchmark ADR-bench to study whether LLM agents are able to find and leverage historical analogies when doing foresight analysis. Our investigation reveals a key obstacle: LLM agents are poor at finding analogies because they match on surface features rather than underlying mechanisms. We argue that ADR is inherently a causal question as it requires understanding why the event occurred. Based on our theoretical analysis, we propose two principles required for ADR, including the mechanism alignment and cross-analogy confirmation. Built upon our theoretical results, we propose a new agentic framework called Causal Analogical Researcher (CANA) that guides LLMs to find and integrate historical analogies. CANA incorporates a simple yet effective structural decomposition representation, and integrates structural feedback for reflective improvements of historical analogy identification and integration. We show that CANA brings up to 10% improvements in historical analogy generation, and surpasses the state-of-the-art deep research agents in the ADR-bench. Case studies with the ongoing events confirm the effectiveness of CANA in leveraging historical analogies.

Yan Li, Yuewen Sun, Shaoan Xie et al.

Causal representation learning (CRL) and traditional representation learning have largely developed along different trajectories. Traditional representation learning has been driven mainly by applications and empirical objectives, whereas CRL has focused more on theoretical questions, particularly identifiability. This difference in emphasis has created a gap between the two fields in terminology, problem formulation, and evaluation, limiting communication and sometimes leading to disconnected or redundant efforts. In this paper, we argue that these two fields should be brought into dialogue rather than treated as separate paradigms. To this end, we introduce a unified formulation in which the representation learning is characterized by two components: a task component, which specifies what information the learned representation is required to preserve, and a constraint component, which specifies what structure is imposed on the latent space. Under this formulation, the benefits run in both directions. CRL provides theoretical tools for understanding when structured latent constraints are useful or necessary, while traditional representation learning offers practical insights on task design and objective choice that can improve the development of CRL methods. To illustrate this interaction, we experimentally study how different task components affect the behavior of CRL methods under different structured constraints. Results on CausalVerse show that the effectiveness of causal constraints depends strongly on the tasks with which they are paired.

Yan Li, Yunlong Deng, Yuewen Sun et al.

Despite the impressive results achieved by multimodal large language models (MLLMs), their training typically relies on jointly curated multimodal data, requiring substantial human effort to construct multi-way aligned datasets and thereby limiting scalability across domains. In this work, we explore training MLLMs by only leveraging multiple paired modalities as a surrogate for the full joint multimodal distribution. Specifically, we first provide a theoretical analysis of the conditions under which the representations are identifiable with only observing pairwise modalities. Building on this analysis, we propose a representation learning framework for aligning latent representations across modalities using only pairwise data. The framework consists of two stages: latent representation alignment and cross-modal recomposition. Specifically, in the first stage, we learn the shared latent space across modalities by both self-modal reconstruction and pair-wise contrastive learning. We also incorporate an inductive bias in the contrastive learning process by partially aligning and minimal latent specification. In stage two, we integrate the encoder of newly introduced modalities with the decoders of the pre-trained modalities to facilitate cross-modal transfer and generation. We evaluate our method by newly adding 3D point clouds and tactile modalities into pre-trained MLLMs with three modality pairs and show that, by learning an aligned latent representation space, our model achieves strong cross-modal performance.

Lingjing Kong, Shaoan Xie, Guangyi Chen et al.

Deep generative models, while revolutionizing fields like image and text generation, largely operate as opaque black boxes, hindering human understanding, control, and alignment. While methods like sparse autoencoders (SAEs) show remarkable empirical success, they often lack theoretical guarantees, risking subjective insights. Our primary objective is to establish a principled foundation for interpretable generative models. We demonstrate that the principle of causal minimality -- favoring the simplest causal explanation -- can endow the latent representations of diffusion vision and autoregressive language models with clear causal interpretation and robust, component-wise identifiable control. We introduce a novel theoretical framework for hierarchical selection models, where higher-level concepts emerge from the constrained composition of lower-level variables, better capturing the complex dependencies in data generation. Under theoretically derived minimality conditions (manifesting as sparsity or compression constraints), we show that learned representations can be equivalent to the true latent variables of the data-generating process. Empirically, applying these constraints to leading generative models allows us to extract their innate hierarchical concept graphs, offering fresh insights into their internal knowledge organization. Furthermore, these causally grounded concepts serve as levers for fine-grained model steering, paving the way for transparent, reliable systems.

Yuewen Sun, Lingjing Kong, Guangyi Chen et al.

Prevalent in biomedical applications (e.g., human phenotype research), multimodal datasets can provide valuable insights into the underlying physiological mechanisms. However, current machine learning (ML) models designed to analyze these datasets often lack interpretability and identifiability guarantees, which are essential for biomedical research. Recent advances in causal representation learning have shown promise in identifying interpretable latent causal variables with formal theoretical guarantees. Unfortunately, most current work on multimodal distributions either relies on restrictive parametric assumptions or yields only coarse identification results, limiting their applicability to biomedical research that favors a detailed understanding of the mechanisms. In this work, we aim to develop flexible identification conditions for multimodal data and principled methods to facilitate the understanding of biomedical datasets. Theoretically, we consider a nonparametric latent distribution (c.f., parametric assumptions in previous work) that allows for causal relationships across potentially different modalities. We establish identifiability guarantees for each latent component, extending the subspace identification results from previous work. Our key theoretical contribution is the structural sparsity of causal connections between modalities, which, as we will discuss, is natural for a large collection of biomedical systems. Empirically, we present a practical framework to instantiate our theoretical insights. We demonstrate the effectiveness of our approach through extensive experiments on both numerical and synthetic datasets. Results on a real-world human phenotype dataset are consistent with established biomedical research, validating our theoretical and methodological framework.

Loka Li, Wong Yu Kang, Minghao Fu et al.

Understanding human behavior traits is central to applications in human-computer interaction, computational social science, and personalized AI systems. Such understanding often requires integrating multiple modalities to capture nuanced patterns and relationships. However, existing resources rarely provide datasets that combine behavioral descriptors with complementary modalities such as facial attributes and biographical information. To address this gap, we present PersonaX, a curated collection of multimodal datasets designed to enable comprehensive analysis of public traits across modalities. PersonaX consists of (1) CelebPersona, featuring 9444 public figures from diverse occupations, and (2) AthlePersona, covering 4181 professional athletes across 7 major sports leagues. Each dataset includes behavioral trait assessments inferred by three high-performing large language models, alongside facial imagery and structured biographical features. We analyze PersonaX at two complementary levels. First, we abstract high-level trait scores from text descriptions and apply five statistical independence tests to examine their relationships with other modalities. Second, we introduce a novel causal representation learning (CRL) framework tailored to multimodal and multi-measurement data, providing theoretical identifiability guarantees. Experiments on both synthetic and real-world data demonstrate the effectiveness of our approach. By unifying structured and unstructured analysis, PersonaX establishes a foundation for studying LLM-inferred behavioral traits in conjunction with visual and biographical attributes, advancing multimodal trait analysis and causal reasoning.

Guangyi Chen, Yifan Shen, Zhenhao Chen et al.

Identifying the underlying time-delayed latent causal processes in sequential data is vital for grasping temporal dynamics and making downstream reasoning. While some recent methods can robustly identify these latent causal variables, they rely on strict assumptions about the invertible generation process from latent variables to observed data. However, these assumptions are often hard to satisfy in real-world applications containing information loss. For instance, the visual perception process translates a 3D space into 2D images, or the phenomenon of persistence of vision incorporates historical data into current perceptions. To address this challenge, we establish an identifiability theory that allows for the recovery of independent latent components even when they come from a nonlinear and non-invertible mix. Using this theory as a foundation, we propose a principled approach, CaRiNG, to learn the CAusal RepresentatIon of Non-invertible Generative temporal data with identifiability guarantees. Specifically, we utilize temporal context to recover lost latent information and apply the conditions in our theory to guide the training process. Through experiments conducted on synthetic datasets, we validate that our CaRiNG method reliably identifies the causal process, even when the generation process is non-invertible. Moreover, we demonstrate that our approach considerably improves temporal understanding and reasoning in practical applications.

Weiran Yao, Yuewen Sun, Alex Ho et al.

Our goal is to recover time-delayed latent causal variables and identify their relations from measured temporal data. Estimating causally-related latent variables from observations is particularly challenging as the latent variables are not uniquely recoverable in the most general case. In this work, we consider both a nonparametric, nonstationary setting and a parametric setting for the latent processes and propose two provable conditions under which temporally causal latent processes can be identified from their nonlinear mixtures. We propose LEAP, a theoretically-grounded framework that extends Variational AutoEncoders (VAEs) by enforcing our conditions through proper constraints in causal process prior. Experimental results on various datasets demonstrate that temporally causal latent processes are reliably identified from observed variables under different dependency structures and that our approach considerably outperforms baselines that do not properly leverage history or nonstationarity information. This demonstrates that using temporal information to learn latent processes from their invertible nonlinear mixtures in an unsupervised manner, for which we believe our work is one of the first, seems promising even without sparsity or minimality assumptions.