Anima Anandkumar

Mucong Ding, Chenghao Deng, Jocelyn Choo et al.

While generalization over tasks from easy to hard is crucial to profile language models (LLMs), the datasets with fine-grained difficulty annotations for each problem across a broad range of complexity are still blank. Aiming to address this limitation, we present Easy2Hard-Bench, a consistently formatted collection of 6 benchmark datasets spanning various domains, such as mathematics and programming problems, chess puzzles, and reasoning questions. Each problem within these datasets is annotated with numerical difficulty scores. To systematically estimate problem difficulties, we collect abundant performance data on attempts to each problem by humans in the real world or LLMs on the prominent leaderboard. Leveraging the rich performance data, we apply well-established difficulty ranking systems, such as Item Response Theory (IRT) and Glicko-2 models, to uniformly assign numerical difficulty scores to problems. Moreover, datasets in Easy2Hard-Bench distinguish themselves from previous collections by a higher proportion of challenging problems. Through extensive experiments with six state-of-the-art LLMs, we provide a comprehensive analysis of their performance and generalization capabilities across varying levels of difficulty, with the aim of inspiring future research in LLM generalization. The datasets are available at https://huggingface.co/datasets/furonghuang-lab/Easy2Hard-Bench.

Shengchao Liu, Weitao Du, Yanjing Li et al.

Artificial intelligence for scientific discovery has recently generated significant interest within the machine learning and scientific communities, particularly in the domains of chemistry, biology, and material discovery. For these scientific problems, molecules serve as the fundamental building blocks, and machine learning has emerged as a highly effective and powerful tool for modeling their geometric structures. Nevertheless, due to the rapidly evolving process of the field and the knowledge gap between science (e.g., physics, chemistry, & biology) and machine learning communities, a benchmarking study on geometrical representation for such data has not been conducted. To address such an issue, in this paper, we first provide a unified view of the current symmetry-informed geometric methods, classifying them into three main categories: invariance, equivariance with spherical frame basis, and equivariance with vector frame basis. Then we propose a platform, coined Geom3D, which enables benchmarking the effectiveness of geometric strategies. Geom3D contains 16 advanced symmetry-informed geometric representation models and 14 geometric pretraining methods over 46 diverse datasets, including small molecules, proteins, and crystalline materials. We hope that Geom3D can, on the one hand, eliminate barriers for machine learning researchers interested in exploring scientific problems; and, on the other hand, provide valuable guidance for researchers in computational chemistry, structural biology, and materials science, aiding in the informed selection of representation techniques for specific applications.

Shengchao Liu, Divin Yan, Weitao Du et al.

Artificial intelligence models have shown great potential in structure-based drug design, generating ligands with high binding affinities. However, existing models have often overlooked a crucial physical constraint: atoms must maintain a minimum pairwise distance to avoid separation violation, a phenomenon governed by the balance of attractive and repulsive forces. To mitigate such separation violations, we propose NucleusDiff. It models the interactions between atomic nuclei and their surrounding electron clouds by enforcing the distance constraint between the nuclei and manifolds. We quantitatively evaluate NucleusDiff using the CrossDocked2020 dataset and a COVID-19 therapeutic target, demonstrating that NucleusDiff reduces violation rate by up to 100.00% and enhances binding affinity by up to 22.16%, surpassing state-of-the-art models for structure-based drug design. We also provide qualitative analysis through manifold sampling, visually confirming the effectiveness of NucleusDiff in reducing separation violations and improving binding affinities.

Nihaal Bhojwani, Chuwei Wang, Hai-Yang Wang et al.

Modeling how supermassive black holes co-evolve with their host galaxies is notoriously hard because the relevant physics spans nine orders of magnitude in scale-from milliparsecs to megaparsecs--making end-to-end first-principles simulation infeasible. To characterize the feedback from the small scales, existing methods employ a static subgrid scheme or one based on theoretical guesses, which usually struggle to capture the time variability and derive physically faithful results. Neural operators are a class of machine learning models that achieve significant speed-up in simulating complex dynamics. We introduce a neural-operator-based ''subgrid black hole'' that learns the small-scale local dynamics and embeds it within the direct multi-level simulations. Trained on small-domain (general relativistic) magnetohydrodynamic data, the model predicts the unresolved dynamics needed to supply boundary conditions and fluxes at coarser levels across timesteps, enabling stable long-horizon rollouts without hand-crafted closures. Thanks to the great speedup in fine-scale evolution, our approach for the first time captures intrinsic variability in accretion-driven feedback, allowing dynamic coupling between the central black hole and galaxy-scale gas. This work reframes subgrid modeling in computational astrophysics with scale separation and provides a scalable path toward data-driven closures for a broad class of systems with central accretors.

Xin Ju, Jiachen Yao, Anima Anandkumar et al.

Accurate characterization of subsurface flow is critical for Carbon Capture and Storage (CCS) but remains challenged by the ill-posed nature of inverse problems with sparse observations. We present Function-space Decoupled Diffusion Posterior Sampling (Fun-DDPS), a generative framework that combines function-space diffusion models with differentiable neural operator surrogates for both forward and inverse modeling. Our approach learns a prior distribution over geological parameters (geomodel) using a single-channel diffusion model, then leverages a Local Neural Operator (LNO) surrogate to provide physics-consistent guidance for cross-field conditioning on the dynamics field. This decoupling allows the diffusion prior to robustly recover missing information in parameter space, while the surrogate provides efficient gradient-based guidance for data assimilation. We demonstrate Fun-DDPS on synthetic CCS modeling datasets, achieving two key results: (1) For forward modeling with only 25% observations, Fun-DDPS achieves 7.7% relative error compared to 86.9% for standard surrogates (an 11x improvement), proving its capability to handle extreme data sparsity where deterministic methods fail. (2) We provide the first rigorous validation of diffusion-based inverse solvers against asymptotically exact Rejection Sampling (RS) posteriors. Both Fun-DDPS and the joint-state baseline (Fun-DPS) achieve Jensen-Shannon divergence less than 0.06 against the ground truth. Crucially, Fun-DDPS produces physically consistent realizations free from the high-frequency artifacts observed in joint-state baselines, achieving this with 4x improved sample efficiency compared to rejection sampling.

Jinqi Xiao, Cheng Luo, Lingyi Huang et al.

Transformers have become the backbone of modern AI, yet their high computational demands pose critical system challenges. While sparse training offers efficiency gains, existing methods fail to preserve critical structural relationships between weight matrices that interact multiplicatively in attention and feed-forward layers. This oversight leads to performance degradation at high sparsity levels. We introduce EcoSpa, an efficient structured sparse training method that jointly evaluates and sparsifies coupled weight matrix pairs, preserving their interaction patterns through aligned row/column removal. EcoSpa introduces a new granularity for calibrating structural component importance and performs coupled estimation and sparsification across both pre-training and fine-tuning scenarios. Evaluations demonstrate substantial improvements: EcoSpa enables efficient training of LLaMA-1B with 50\% memory reduction and 21\% faster training, achieves $2.2\times$ model compression on GPT-2-Medium with $2.4$ lower perplexity, and delivers $1.6\times$ inference speedup. The approach uses standard PyTorch operations, requiring no custom hardware or kernels, making efficient transformer training accessible on commodity hardware.

Xinlong Wang, Zhiding Yu, Shalini De Mello et al.

Instance segmentation is a fundamental vision task that aims to recognize and segment each object in an image. However, it requires costly annotations such as bounding boxes and segmentation masks for learning. In this work, we propose a fully unsupervised learning method that learns class-agnostic instance segmentation without any annotations. We present FreeSOLO, a self-supervised instance segmentation framework built on top of the simple instance segmentation method SOLO. Our method also presents a novel localization-aware pre-training framework, where objects can be discovered from complicated scenes in an unsupervised manner. FreeSOLO achieves 9.8% AP_{50} on the challenging COCO dataset, which even outperforms several segmentation proposal methods that use manual annotations. For the first time, we demonstrate unsupervised class-agnostic instance segmentation successfully. FreeSOLO's box localization significantly outperforms state-of-the-art unsupervised object detection/discovery methods, with about 100% relative improvements in COCO AP. FreeSOLO further demonstrates superiority as a strong pre-training method, outperforming state-of-the-art self-supervised pre-training methods by +9.8% AP when fine-tuning instance segmentation with only 5% COCO masks. Code is available at: github.com/NVlabs/FreeSOLO

Boris Bonev, Thorsten Kurth, Ankur Mahesh et al.

FourCastNet 3 advances global weather modeling by implementing a scalable, geometric machine learning (ML) approach to probabilistic ensemble forecasting. The approach is designed to respect spherical geometry and to accurately model the spatially correlated probabilistic nature of the problem, resulting in stable spectra and realistic dynamics across multiple scales. FourCastNet 3 delivers forecasting accuracy that surpasses leading conventional ensemble models and rivals the best diffusion-based methods, while producing forecasts 8 to 60 times faster than these approaches. In contrast to other ML approaches, FourCastNet 3 demonstrates excellent probabilistic calibration and retains realistic spectra, even at extended lead times of up to 60 days. All of these advances are realized using a purely convolutional neural network architecture tailored for spherical geometry. Scalable and efficient large-scale training on 1024 GPUs and more is enabled by a novel training paradigm for combined model- and data-parallelism, inspired by domain decomposition methods in classical numerical models. Additionally, FourCastNet 3 enables rapid inference on a single GPU, producing a 60-day global forecast at 0.25°, 6-hourly resolution in under 4 minutes. Its computational efficiency, medium-range probabilistic skill, spectral fidelity, and rollout stability at subseasonal timescales make it a strong candidate for improving meteorological forecasting and early warning systems through large ensemble predictions.

Jiayun Wang, Oleksii Ostras, Masashi Sode et al.

Lung ultrasound is a growing modality in clinics for diagnosing and monitoring acute and chronic lung diseases due to its low cost and accessibility. Lung ultrasound works by emitting diagnostic pulses, receiving pressure waves and converting them into radio frequency (RF) data, which are then processed into B-mode images with beamformers for radiologists to interpret. However, unlike conventional ultrasound for soft tissue anatomical imaging, lung ultrasound interpretation is complicated by complex reverberations from the pleural interface caused by the inability of ultrasound to penetrate air. The indirect B-mode images make interpretation highly dependent on reader expertise, requiring years of training, which limits its widespread use despite its potential for high accuracy in skilled hands. To address these challenges and democratize ultrasound lung imaging as a reliable diagnostic tool, we propose LUNA, an AI model that directly reconstructs lung aeration maps from RF data, bypassing the need for traditional beamformers and indirect interpretation of B-mode images. LUNA uses a Fourier neural operator, which processes RF data efficiently in Fourier space, enabling accurate reconstruction of lung aeration maps. LUNA offers a quantitative, reader-independent alternative to traditional semi-quantitative lung ultrasound scoring methods. The development of LUNA involves synthetic and real data: We simulate synthetic data with an experimentally validated approach and scan ex vivo swine lungs as real data. Trained on abundant simulated data and fine-tuned with a small amount of real-world data, LUNA achieves robust performance, demonstrated by an aeration estimation error of 9% in ex-vivo lung scans. We demonstrate the potential of reconstructing lung aeration maps from RF data, providing a foundation for improving lung ultrasound reproducibility and diagnostic utility.

Yixuan Wang, Ziming Liu, Zongyi Li et al.

We investigate the high-precision training of Physics-Informed Neural Networks (PINNs) in unbounded domains, with a special focus on applications to singularity formulation in PDEs. We propose a modularized approach and study the choices of neural network ansatz, sampling strategy, and optimization algorithm. When combined with rigorous computer-assisted proofs and PDE analysis, the numerical solutions identified by PINNs, provided they are of high precision, can serve as a powerful tool for studying singularities in PDEs. For 1D Burgers equation, our framework can lead to a solution with very high precision, and for the 2D Boussinesq equation, which is directly related to the singularity formulation in 3D Euler and Navier-Stokes equations, we obtain a solution whose loss is $4$ digits smaller than that obtained in \cite{wang2023asymptotic} with fewer training steps. We also discuss potential directions for pushing towards machine precision for higher-dimensional problems.

Luca Ghafourpour, Valentin Duruisseaux, Bahareh Tolooshams et al.

Characterizing the cellular properties of neurons is fundamental to understanding their function in the brain. In this quest, the generation of bio-realistic models is central towards integrating multimodal cellular data sets and establishing causal relationships. However, current modeling approaches remain constrained by the limited availability and intrinsic variability of experimental neuronal data. The deterministic formalism of bio-realistic models currently precludes accounting for the natural variability observed experimentally. While deep learning is becoming increasingly relevant in this space, it fails to capture the full biophysical complexity of neurons, their nonlinear voltage dynamics, and variability. To address these shortcomings, we introduce NOBLE, a neural operator framework that learns a mapping from a continuous frequency-modulated embedding of interpretable neuron features to the somatic voltage response induced by current injection. Trained on synthetic data generated from bio-realistic neuron models, NOBLE predicts distributions of neural dynamics accounting for the intrinsic experimental variability. Unlike conventional bio-realistic neuron models, interpolating within the embedding space offers models whose dynamics are consistent with experimentally observed responses. NOBLE enables the efficient generation of synthetic neurons that closely resemble experimental data and exhibit trial-to-trial variability, offering a $4200\times$ speedup over the numerical solver. NOBLE is the first scaled-up deep learning framework that validates its generalization with real experimental data. To this end, NOBLE captures fundamental neural properties in a unique and emergent manner that opens the door to a better understanding of cellular composition and computations, neuromorphic architectures, large-scale brain circuits, and general neuroAI applications.

Beom Seok Kang, Vignesh C. Bhethanabotla, Amin Tavakoli et al.

Despite the success of deep learning methods in quantum chemistry, their representational capacity is most often confined to neutral, closed-shell molecules. However, real-world chemical systems often exhibit complex characteristics, including varying charges, spins, and environments. We introduce OrbitAll, a geometry- and physics-informed deep learning framework that can represent all molecular systems with electronic structure information. OrbitAll utilizes spin-polarized orbital features from the underlying quantum mechanical method, and combines it with graph neural networks satisfying SE(3)-equivariance. The resulting framework can represent and process any molecular system with arbitrary charges, spins, and environmental effects. OrbitAll demonstrates superior performance and generalization on predicting charged, open-shell, and solvated molecules, while also robustly extrapolating to molecules significantly larger than the training data by leveraging a physics-informed architecture. OrbitAll achieves chemical accuracy using 10 times fewer training data than competing AI models, with a speedup of approximately $10^3$ - $10^4$ compared to density functional theory.

Bahareh Tolooshams, Aditi Chandrashekar, Rayhan Zirvi et al.

Diffusion models represent the state-of-the-art for solving inverse problems such as image restoration tasks. In the Bayesian framework, diffusion-based inverse solvers incorporate a likelihood term to guide the prior sampling process, generating data consistent with the posterior distribution. However, due to the intractability of the likelihood term, many current methods rely on isotropic Gaussian approximations, which lead to deviations from the data manifold and result in inconsistent, unstable reconstructions. We propose Equivariance Regularized (EquiReg) diffusion, a general framework for regularizing posterior sampling in diffusion-based inverse problem solvers. EquiReg enhances reconstructions by reweighting diffusion trajectories and penalizing those that deviate from the data manifold. We define a new distribution-dependent equivariance error, empirically identify functions that exhibit low error for on-manifold samples and higher error for off-manifold samples, and leverage these functions to regularize the diffusion sampling process. When applied to a variety of solvers, EquiReg outperforms state-of-the-art diffusion models in both linear and nonlinear image restoration tasks, as well as in reconstructing partial differential equations.

Junyang Zhang, Tianyi Zhu, Cheng Luo et al.

Long-context language models exhibit impressive performance but remain challenging to deploy due to high GPU memory demands during inference. We propose Memory-efficient Offloaded Mini-sequence Inference (MOM), a method that partitions critical layers into smaller "mini-sequences" and integrates seamlessly with KV cache offloading. Experiments on various Llama, Qwen, and Mistral models demonstrate that MOM reduces peak memory usage by over 50\% on average. On Meta-Llama-3.2-8B, MOM extends the maximum context length from 155k to 455k tokens on a single A100 80GB GPU, while keeping outputs identical and not compromising accuracy. MOM also maintains highly competitive throughput due to minimal computational overhead and efficient last-layer processing. Compared to traditional chunked prefill methods, MOM achieves a 35\% greater context length extension. More importantly, our method drastically reduces prefill memory consumption, eliminating it as the longstanding dominant memory bottleneck during inference. This breakthrough fundamentally changes research priorities, redirecting future efforts from prefill-stage optimizations to improving decode-stage residual KV cache efficiency.

Zahra Ghodsi, Siva Kumar Sastry Hari, Iuri Frosio et al.

Extracting interesting scenarios from real-world data as well as generating failure cases is important for the development and testing of autonomous systems. We propose efficient mechanisms to both characterize and generate testing scenarios using a state-of-the-art driving simulator. For any scenario, our method generates a set of possible driving paths and identifies all the possible safe driving trajectories that can be taken starting at different times, to compute metrics that quantify the complexity of the scenario. We use our method to characterize real driving data from the Next Generation Simulation (NGSIM) project, as well as adversarial scenarios generated in simulation. We rank the scenarios by defining metrics based on the complexity of avoiding accidents and provide insights into how the AV could have minimized the probability of incurring an accident. We demonstrate a strong correlation between the proposed metrics and human intuition.

Haoxuan Wang, Zhiding Yu, Yisong Yue et al.

We propose a framework for learning calibrated uncertainties under domain shifts, where the source (training) distribution differs from the target (test) distribution. We detect such domain shifts via a differentiable density ratio estimator and train it together with the task network, composing an adjusted softmax predictive form concerning domain shift. In particular, the density ratio estimation reflects the closeness of a target (test) sample to the source (training) distribution. We employ it to adjust the uncertainty of prediction in the task network. This idea of using the density ratio is based on the distributionally robust learning (DRL) framework, which accounts for the domain shift by adversarial risk minimization. We show that our proposed method generates calibrated uncertainties that benefit downstream tasks, such as unsupervised domain adaptation (UDA) and semi-supervised learning (SSL). On these tasks, methods like self-training and FixMatch use uncertainties to select confident pseudo-labels for re-training. Our experiments show that the introduction of DRL leads to significant improvements in cross-domain performance. We also show that the estimated density ratios align with human selection frequencies, suggesting a positive correlation with a proxy of human perceived uncertainties.

Hongyu Ren, Yuke Zhu, Jure Leskovec et al.

Real-world tasks often exhibit a compositional structure that contains a sequence of simpler sub-tasks. For instance, opening a door requires reaching, grasping, rotating, and pulling the door knob. Such compositional tasks require an agent to reason about the sub-task at hand while orchestrating global behavior accordingly. This can be cast as an online task inference problem, where the current task identity, represented by a context variable, is estimated from the agent's past experiences with probabilistic inference. Previous approaches have employed simple latent distributions, e.g., Gaussian, to model a single context for the entire task. However, this formulation lacks the expressiveness to capture the composition and transition of the sub-tasks. We propose a variational inference framework OCEAN to perform online task inference for compositional tasks. OCEAN models global and local context variables in a joint latent space, where the global variables represent a mixture of sub-tasks required for the task, while the local variables capture the transitions between the sub-tasks. Our framework supports flexible latent distributions based on prior knowledge of the task structure and can be trained in an unsupervised manner. Experimental results show that OCEAN provides more effective task inference with sequential context adaptation and thus leads to a performance boost on complex, multi-stage tasks.