Xiangyu Shi

Xue Zhang, Xiangyu Shi, Xinyue Lou et al.

Large language models (LLMs) and multimodal large language models (MLLMs) have shown excellent general capabilities, even exhibiting adaptability in many professional domains such as law, economics, transportation, and medicine. Currently, many domain-specific benchmarks have been proposed to verify the performance of (M)LLMs in specific fields. Among various domains, transportation plays a crucial role in modern society as it impacts the economy, the environment, and the quality of life for billions of people. However, it is unclear how much traffic knowledge (M)LLMs possess and whether they can reliably perform transportation-related tasks. To address this gap, we propose TransportationGames, a carefully designed and thorough evaluation benchmark for assessing (M)LLMs in the transportation domain. By comprehensively considering the applications in real-world scenarios and referring to the first three levels in Bloom's Taxonomy, we test the performance of various (M)LLMs in memorizing, understanding, and applying transportation knowledge by the selected tasks. The experimental results show that although some models perform well in some tasks, there is still much room for improvement overall. We hope the release of TransportationGames can serve as a foundation for future research, thereby accelerating the implementation and application of (M)LLMs in the transportation domain.

Yanting Li, Jiyue Jiang, Zikang Wang et al.

Inverse Protein Folding (IPF) is a critical subtask in the field of protein design, aiming to engineer amino acid sequences capable of folding correctly into a specified three-dimensional (3D) conformation. Although substantial progress has been achieved in recent years, existing methods generally rely on either backbone coordinates or molecular surface features alone, which restricts their ability to fully capture the complex chemical and geometric constraints necessary for precise sequence prediction. To address this limitation, we present DS-ProGen, a dual-structure deep language model for functional protein design, which integrates both backbone geometry and surface-level representations. By incorporating backbone coordinates as well as surface chemical and geometric descriptors into a next-amino-acid prediction paradigm, DS-ProGen is able to generate functionally relevant and structurally stable sequences while satisfying both global and local conformational constraints. On the PRIDE dataset, DS-ProGen attains the current state-of-the-art recovery rate of 61.47%, demonstrating the synergistic advantage of multi-modal structural encoding in protein design. Furthermore, DS-ProGen excels in predicting interactions with a variety of biological partners, including ligands, ions, and RNA, confirming its robust functional retention capabilities.

Xiangyu Shi, Yunlong Liang, Jinan Xu et al.

Recent works have proven the effectiveness of k-nearest-neighbor machine translation(a.k.a kNN-MT) approaches to produce remarkable improvement in cross-domain translations. However, these models suffer from heavy retrieve overhead on the entire datastore when decoding each token. We observe that during the decoding phase, about 67% to 84% of tokens are unvaried after searching over the corpus datastore, which means most of the tokens cause futile retrievals and introduce unnecessary computational costs by initiating k-nearest-neighbor searches. We consider this phenomenon is explainable in linguistics and propose a simple yet effective multi-layer perceptron (MLP) network to predict whether a token should be translated jointly by the neural machine translation model and probabilities produced by the kNN or just by the neural model. The results show that our method succeeds in reducing redundant retrieval operations and significantly reduces the overhead of kNN retrievals by up to 53% at the expense of a slight decline in translation quality. Moreover, our method could work together with all existing kNN-MT systems. This work has been accepted for publication in the jornal Advances in Artificial Intelligence and Machine Learning (ISSN: 2582-9793). The final published version can be found at DOI: https://dx.doi.org/10.54364/AAIML.2024.41111