Ahmed Alaa

Shenghuan Sun, Gregory M. Goldgof, Atul Butte et al.

Generative models capable of capturing nuanced clinical features in medical images hold great promise for facilitating clinical data sharing, enhancing rare disease datasets, and efficiently synthesizing annotated medical images at scale. Despite their potential, assessing the quality of synthetic medical images remains a challenge. While modern generative models can synthesize visually-realistic medical images, the clinical validity of these images may be called into question. Domain-agnostic scores, such as FID score, precision, and recall, cannot incorporate clinical knowledge and are, therefore, not suitable for assessing clinical sensibility. Additionally, there are numerous unpredictable ways in which generative models may fail to synthesize clinically plausible images, making it challenging to anticipate potential failures and manually design scores for their detection. To address these challenges, this paper introduces a pathologist-in-the-loop framework for generating clinically-plausible synthetic medical images. Starting with a diffusion model pretrained using real images, our framework comprises three steps: (1) evaluating the generated images by expert pathologists to assess whether they satisfy clinical desiderata, (2) training a reward model that predicts the pathologist feedback on new samples, and (3) incorporating expert knowledge into the diffusion model by using the reward model to inform a finetuning objective. We show that human feedback significantly improves the quality of synthetic images in terms of fidelity, diversity, utility in downstream applications, and plausibility as evaluated by experts.

Yulu Gan, Sungwoo Park, Alexander Schubert et al. · pku

Recent advances in generative diffusion models have enabled text-controlled synthesis of realistic and diverse images with impressive quality. Despite these remarkable advances, the application of text-to-image generative models in computer vision for standard visual recognition tasks remains limited. The current de facto approach for these tasks is to design model architectures and loss functions that are tailored to the task at hand. In this paper, we develop a unified language interface for computer vision tasks that abstracts away task-specific design choices and enables task execution by following natural language instructions. Our approach involves casting multiple computer vision tasks as text-to-image generation problems. Here, the text represents an instruction describing the task, and the resulting image is a visually-encoded task output. To train our model, we pool commonly-used computer vision datasets covering a range of tasks, including segmentation, object detection, depth estimation, and classification. We then use a large language model to paraphrase prompt templates that convey the specific tasks to be conducted on each image, and through this process, we create a multi-modal and multi-task training dataset comprising input and output images along with annotated instructions. Following the InstructPix2Pix architecture, we apply instruction-tuning to a text-to-image diffusion model using our constructed dataset, steering its functionality from a generative model to an instruction-guided multi-task vision learner. Experiments demonstrate that our model, dubbed InstructCV, performs competitively compared to other generalist and task-specific vision models. Moreover, it exhibits compelling generalization capabilities to unseen data, categories, and user instructions.

Jiaxing Qiu, Kaihua Hou, Roxana Daneshjou et al.

Model editing aims to correct errors in large, pretrained models without altering unrelated behaviors. While some recent works have edited vision-language models (VLMs), no existing editors tackle reasoning-heavy tasks, which typically require humans and models to reason about images. We therefore propose ReasonEdit, the first VLM editor to let users explain their reasoning during editing, introducing a new, practical model editing setup. ReasonEdit continuously stores human reasoning in a codebook, and retrieves only relevant facts during inference using a novel topology-balanced multimodal embedding method inspired by network science. Across four VLMs on multiple rationale-based visual question answering datasets, ReasonEdit achieves state-of-the-art editing performance, ultimately showing that using human reasoning during editing greatly improves edit generalization.

Lars van der Laan, Ahmed M. Alaa

In machine learning, model calibration and predictive inference are essential for producing reliable predictions and quantifying uncertainty to support decision-making. Recognizing the complementary roles of point and interval predictions, we introduce Self-Calibrating Conformal Prediction, a method that combines Venn-Abers calibration and conformal prediction to deliver calibrated point predictions alongside prediction intervals with finite-sample validity conditional on these predictions. To achieve this, we extend the original Venn-Abers procedure from binary classification to regression. Our theoretical framework supports analyzing conformal prediction methods that involve calibrating model predictions and subsequently constructing conditionally valid prediction intervals on the same data, where the conditioning set or conformity scores may depend on the calibrated predictions. Real-data experiments show that our method improves interval efficiency through model calibration and offers a practical alternative to feature-conditional validity.

Lars van der Laan, Ahmed Alaa

Ensuring model calibration is critical for reliable prediction, yet popular distribution-free methods such as histogram binning and isotonic regression offer only asymptotic guarantees. We introduce a unified framework for Venn and Venn-Abers calibration that extends Vovk's approach beyond binary classification to a broad class of prediction problems defined by generic loss functions. Our method transforms any perfectly in-sample calibrated predictor into a set-valued predictor that, in finite samples, outputs at least one marginally calibrated point prediction. These set predictions shrink asymptotically and converge to a single conditionally calibrated prediction, capturing epistemic uncertainty. We further propose Venn multicalibration, a new approach for achieving finite-sample calibration across subpopulations. For quantile loss, our framework recovers group-conditional and multicalibrated conformal prediction as special cases and yields novel prediction intervals with quantile-conditional coverage.

Frances Dean, Jenna Fields, Radhika Bhalerao et al.

Instrumental variable (IV) methods mitigate bias from unobserved confounding in observational causal inference but rely on the availability of a valid instrument, which can often be difficult or infeasible to identify in practice. In this paper, we propose a representation learning approach that constructs instrumental representations from observed covariates, which enable IV-based estimation even in the absence of an explicit instrument. Our model (ZNet) achieves this through an architecture that mirrors the structural causal model of IVs; it decomposes the ambient feature space into confounding and instrumental components, and is trained by enforcing empirical moment conditions corresponding to the defining properties of valid instruments (i.e., relevance, exclusion restriction, and instrumental unconfoundedness). Importantly, ZNet is compatible with a wide range of downstream two-stage IV estimators of causal effects. Our experiments demonstrate that ZNet can (i) recover ground-truth instruments when they already exist in the ambient feature space and (ii) construct latent instruments in the embedding space when no explicit IVs are available. This suggests that ZNet can be used as a ``plug-and-play'' module for causal inference in general observational settings, regardless of whether the (untestable) assumption of unconfoundedness is satisfied.

Marco Gutierrez, Xinyi Leng, Hannah Cyberey et al.

Language model benchmarks are pervasive and computationally-efficient proxies for real-world performance. However, many recent works find that benchmarks often fail to predict real utility. Towards bridging this gap, we introduce benchmark alignment, where we use limited amounts of information about model performance to automatically update offline benchmarks, aiming to produce new static benchmarks that predict model pairwise preferences in given test settings. We then propose BenchAlign, the first solution to this problem, which learns preference-aligned weight- ings for benchmark questions using the question-level performance of language models alongside ranked pairs of models that could be collected during deployment, producing new benchmarks that rank previously unseen models according to these preferences. Our experiments show that our aligned benchmarks can accurately rank unseen models according to models of human preferences, even across different sizes, while remaining interpretable. Overall, our work provides insights into the limits of aligning benchmarks with practical human preferences, which stands to accelerate model development towards real utility.

Yash Kumar Atri, Ahmed Alaa, Thomas Hartvigsen

Large language models (LLMs) have revolutionized natural language processing, yet their practical utility is often limited by persistent issues of hallucinations and outdated parametric knowledge. Although post-training model editing offers a pathway for dynamic updates, existing methods frequently suffer from overfitting and catastrophic forgetting. To tackle these challenges, we propose a novel framework that leverages hyperbolic geometry and graph neural networks for precise and stable model edits. We introduce HYPE (HYperbolic Parameter Editing), which comprises three key components: (i) Hyperbolic Graph Construction, which uses Poincaré embeddings to represent knowledge triples in hyperbolic space, preserving hierarchical relationships and preventing unintended side effects by ensuring that edits to parent concepts do not inadvertently affect child concepts; (ii) Möbius-Transformed Updates, which apply hyperbolic addition to propagate edits while maintaining structural consistency within the hyperbolic manifold, unlike conventional Euclidean updates that distort relational distances; and (iii) Dual Stabilization, which combines gradient masking and periodic GNN parameter resetting to prevent catastrophic forgetting by focusing updates on critical parameters and preserving long-term knowledge. Experiments on CounterFact, CounterFact+, and MQuAKE with GPT-J and GPT2-XL demonstrate that HYPE significantly enhances edit stability, factual accuracy, and multi-hop reasoning.