Qingyun Sun

Ruitong Zhang, Hao Peng, Yingtong Dou et al.

DBSCAN is widely used in many scientific and engineering fields because of its simplicity and practicality. However, due to its high sensitivity parameters, the accuracy of the clustering result depends heavily on practical experience. In this paper, we first propose a novel Deep Reinforcement Learning guided automatic DBSCAN parameters search framework, namely DRL-DBSCAN. The framework models the process of adjusting the parameter search direction by perceiving the clustering environment as a Markov decision process, which aims to find the best clustering parameters without manual assistance. DRL-DBSCAN learns the optimal clustering parameter search policy for different feature distributions via interacting with the clusters, using a weakly-supervised reward training policy network. In addition, we also present a recursive search mechanism driven by the scale of the data to efficiently and controllably process large parameter spaces. Extensive experiments are conducted on five artificial and real-world datasets based on the proposed four working modes. The results of offline and online tasks show that the DRL-DBSCAN not only consistently improves DBSCAN clustering accuracy by up to 26% and 25% respectively, but also can stably find the dominant parameters with high computational efficiency. The code is available at https://github.com/RingBDStack/DRL-DBSCAN.

Beining Yang, Kai Wang, Qingyun Sun et al.

Training on large-scale graphs has achieved remarkable results in graph representation learning, but its cost and storage have attracted increasing concerns. Existing graph condensation methods primarily focus on optimizing the feature matrices of condensed graphs while overlooking the impact of the structure information from the original graphs. To investigate the impact of the structure information, we conduct analysis from the spectral domain and empirically identify substantial Laplacian Energy Distribution (LED) shifts in previous works. Such shifts lead to poor performance in cross-architecture generalization and specific tasks, including anomaly detection and link prediction. In this paper, we propose a novel Structure-broadcasting Graph Dataset Distillation (SGDD) scheme for broadcasting the original structure information to the generation of the synthetic one, which explicitly prevents overlooking the original structure information. Theoretically, the synthetic graphs by SGDD are expected to have smaller LED shifts than previous works, leading to superior performance in both cross-architecture settings and specific tasks. We validate the proposed SGDD across 9 datasets and achieve state-of-the-art results on all of them: for example, on the YelpChi dataset, our approach maintains 98.6% test accuracy of training on the original graph dataset with 1,000 times saving on the scale of the graph. Moreover, we empirically evaluate there exist 17.6% ~ 31.4% reductions in LED shift crossing 9 datasets. Extensive experiments and analysis verify the effectiveness and necessity of the proposed designs. The code is available in the GitHub repository: https://github.com/RingBDStack/SGDD.

Wenhan Xiao, Ziwei Zhang, Chuanyue Yu et al.

Retrieval-augmented generation (RAG) improves knowledge-intensive question answering by incorporating external evidence. However, existing RAG methods still suffer from hallucinations and subtle reasoning errors. Recent studies introduce external critics to refine RAG outputs, yet they often provide coarse-grained and weakly structured feedback, exhibit over-aggressive intervention, and lead to noisy and unreliable refinement, limiting their effectiveness for correction. To tackle these issues, we propose CRITIC-R1, a structured critic framework that formulates and learns RAG critique as an explicit error diagnosis problem using reinforcement learning (RL). Our framework categorizes common RAG errors into multiple diagnostic dimensions, including verdict, error location, reasoning analysis, and fix generation. To learn these capabilities, we design two reward functions: Conservative Judgement Alignment (CJA) first encourages calibrated high-level judgements while mitigating the over-aggressive phenomenon, whereas Diagnostic Quality Alignment (DQA) further improves fine-grained diagnostic feedback through gated rewards. We train the critic model using GRPO-based RL with process-level supervision collected from external LLM teacher models. Experiments across five QA benchmarks show that CRITIC-R1 consistently improves answer quality over strong RAG baselines. Our source code is available at https://anonymous.4open.science/r/critic-r1-FCB0

Qingyun Sun, Jianxin Li, Haonan Yuan et al.

Topology-imbalance is a graph-specific imbalance problem caused by the uneven topology positions of labeled nodes, which significantly damages the performance of GNNs. What topology-imbalance means and how to measure its impact on graph learning remain under-explored. In this paper, we provide a new understanding of topology-imbalance from a global view of the supervision information distribution in terms of under-reaching and over-squashing, which motivates two quantitative metrics as measurements. In light of our analysis, we propose a novel position-aware graph structure learning framework named PASTEL, which directly optimizes the information propagation path and solves the topology-imbalance issue in essence. Our key insight is to enhance the connectivity of nodes within the same class for more supervision information, thereby relieving the under-reaching and over-squashing phenomena. Specifically, we design an anchor-based position encoding mechanism, which better incorporates relative topology position and enhances the intra-class inductive bias by maximizing the label influence. We further propose a class-wise conflict measure as the edge weights, which benefits the separation of different node classes. Extensive experiments demonstrate the superior potential and adaptability of PASTEL in enhancing GNNs' power in different data annotation scenarios.

Xingcheng Fu, Yuecen Wei, Qingyun Sun et al.

Learning unbiased node representations for imbalanced samples in the graph has become a more remarkable and important topic. For the graph, a significant challenge is that the topological properties of the nodes (e.g., locations, roles) are unbalanced (topology-imbalance), other than the number of training labeled nodes (quantity-imbalance). Existing studies on topology-imbalance focus on the location or the local neighborhood structure of nodes, ignoring the global underlying hierarchical properties of the graph, i.e., hierarchy. In the real-world scenario, the hierarchical structure of graph data reveals important topological properties of graphs and is relevant to a wide range of applications. We find that training labeled nodes with different hierarchical properties have a significant impact on the node classification tasks and confirm it in our experiments. It is well known that hyperbolic geometry has a unique advantage in representing the hierarchical structure of graphs. Therefore, we attempt to explore the hierarchy-imbalance issue for node classification of graph neural networks with a novelty perspective of hyperbolic geometry, including its characteristics and causes. Then, we propose a novel hyperbolic geometric hierarchy-imbalance learning framework, named HyperIMBA, to alleviate the hierarchy-imbalance issue caused by uneven hierarchy-levels and cross-hierarchy connectivity patterns of labeled nodes.Extensive experimental results demonstrate the superior effectiveness of HyperIMBA for hierarchy-imbalance node classification tasks.

Qingyun Sun, Jianxin Li, Beining Yang et al.

Most Graph Neural Networks follow the message-passing paradigm, assuming the observed structure depicts the ground-truth node relationships. However, this fundamental assumption cannot always be satisfied, as real-world graphs are always incomplete, noisy, or redundant. How to reveal the inherent graph structure in a unified way remains under-explored. We proposed PRI-GSL, a Graph Structure Learning framework guided by the Principle of Relevant Information, providing a simple and unified framework for identifying the self-organization and revealing the hidden structure. PRI-GSL learns a structure that contains the most relevant yet least redundant information quantified by von Neumann entropy and Quantum Jensen-Shannon divergence. PRI-GSL incorporates the evolution of quantum continuous walk with graph wavelets to encode node structural roles, showing in which way the nodes interplay and self-organize with the graph structure. Extensive experiments demonstrate the superior effectiveness and robustness of PRI-GSL.

Jianxin Li, Xingcheng Fu, Qingyun Sun et al.

Generative adversarial network (GAN) is widely used for generalized and robust learning on graph data. However, for non-Euclidean graph data, the existing GAN-based graph representation methods generate negative samples by random walk or traverse in discrete space, leading to the information loss of topological properties (e.g. hierarchy and circularity). Moreover, due to the topological heterogeneity (i.e., different densities across the graph structure) of graph data, they suffer from serious topological distortion problems. In this paper, we proposed a novel Curvature Graph Generative Adversarial Networks method, named \textbf{\modelname}, which is the first GAN-based graph representation method in the Riemannian geometric manifold. To better preserve the topological properties, we approximate the discrete structure as a continuous Riemannian geometric manifold and generate negative samples efficiently from the wrapped normal distribution. To deal with the topological heterogeneity, we leverage the Ricci curvature for local structures with different topological properties, obtaining to low-distortion representations. Extensive experiments show that CurvGAN consistently and significantly outperforms the state-of-the-art methods across multiple tasks and shows superior robustness and generalization.

Qian Li, Jianxin Li, Lihong Wang et al.

Event detection in power systems aims to identify triggers and event types, which helps relevant personnel respond to emergencies promptly and facilitates the optimization of power supply strategies. However, the limited length of short electrical record texts causes severe information sparsity, and numerous domain-specific terminologies of power systems makes it difficult to transfer knowledge from language models pre-trained on general-domain texts. Traditional event detection approaches primarily focus on the general domain and ignore these two problems in the power system domain. To address the above issues, we propose a Multi-Channel graph neural network utilizing Type information for Event Detection in power systems, named MC-TED, leveraging a semantic channel and a topological channel to enrich information interaction from short texts. Concretely, the semantic channel refines textual representations with semantic similarity, building the semantic information interaction among potential event-related words. The topological channel generates a relation-type-aware graph modeling word dependencies, and a word-type-aware graph integrating part-of-speech tags. To further reduce errors worsened by professional terminologies in type analysis, a type learning mechanism is designed for updating the representations of both the word type and relation type in the topological channel. In this way, the information sparsity and professional term occurrence problems can be alleviated by enabling interaction between topological and semantic information. Furthermore, to address the lack of labeled data in power systems, we built a Chinese event detection dataset based on electrical Power Event texts, named PoE. In experiments, our model achieves compelling results not only on the PoE dataset, but on general-domain event detection datasets including ACE 2005 and MAVEN.

Haonan Yuan, Qingyun Sun, Xingcheng Fu et al.

Dynamic graph neural networks (DGNNs) are increasingly pervasive in exploiting spatio-temporal patterns on dynamic graphs. However, existing works fail to generalize under distribution shifts, which are common in real-world scenarios. As the generation of dynamic graphs is heavily influenced by latent environments, investigating their impacts on the out-of-distribution (OOD) generalization is critical. However, it remains unexplored with the following two major challenges: (1) How to properly model and infer the complex environments on dynamic graphs with distribution shifts? (2) How to discover invariant patterns given inferred spatio-temporal environments? To solve these challenges, we propose a novel Environment-Aware dynamic Graph LEarning (EAGLE) framework for OOD generalization by modeling complex coupled environments and exploiting spatio-temporal invariant patterns. Specifically, we first design the environment-aware EA-DGNN to model environments by multi-channel environments disentangling. Then, we propose an environment instantiation mechanism for environment diversification with inferred distributions. Finally, we discriminate spatio-temporal invariant patterns for out-of-distribution prediction by the invariant pattern recognition mechanism and perform fine-grained causal interventions node-wisely with a mixture of instantiated environment samples. Experiments on real-world and synthetic dynamic graph datasets demonstrate the superiority of our method against state-of-the-art baselines under distribution shifts. To the best of our knowledge, we are the first to study OOD generalization on dynamic graphs from the environment learning perspective.

Yuecen Wei, Xingcheng Fu, Qingyun Sun et al.

Social networks are considered to be heterogeneous graph neural networks (HGNNs) with deep learning technological advances. HGNNs, compared to homogeneous data, absorb various aspects of information about individuals in the training stage. That means more information has been covered in the learning result, especially sensitive information. However, the privacy-preserving methods on homogeneous graphs only preserve the same type of node attributes or relationships, which cannot effectively work on heterogeneous graphs due to the complexity. To address this issue, we propose a novel heterogeneous graph neural network privacy-preserving method based on a differential privacy mechanism named HeteDP, which provides a double guarantee on graph features and topology. In particular, we first define a new attack scheme to reveal privacy leakage in the heterogeneous graphs. Specifically, we design a two-stage pipeline framework, which includes the privacy-preserving feature encoder and the heterogeneous link reconstructor with gradients perturbation based on differential privacy to tolerate data diversity and against the attack. To better control the noise and promote model performance, we utilize a bi-level optimization pattern to allocate a suitable privacy budget for the above two modules. Our experiments on four public benchmarks show that the HeteDP method is equipped to resist heterogeneous graph privacy leakage with admirable model generalization.

Jiayi Luo, Qiyan Liu, Tengyang Wang et al.

Autoregressive (AR) video generation has emerged as a promising paradigm for long-horizon video synthesis, where each frame is generated conditioned on previously generated tokens. To accelerate inference, the KV cache is used to avoid redundant recomputation across generation steps. Nevertheless, its growth with generation length introduces increasing memory and error accumulation, limiting the scalability of AR models to even longer sequences. Existing KV cache compression methods mitigate this issue by selectively retaining only video tokens deemed important. However, most existing methods assess token importance using short-horizon signals derived from the current or historical generation context, making these methods prone to overlooking tokens that appear unimportant at early steps but later become critical for future frames. In this work, we identify an important property of trained AR video models: although RoPE-modulated queries evolve across autoregressive steps, the underlying canonical pre-RoPE query distribution remains remarkably stable throughout the video generation process. This approximate stationarity implies that future query distributions are estimable from historical statistics, enabling principled future-aware cache decisions without any additional training. Building on this insight, we propose Future Forcing, a training-free future-aware KV cache policy for AR video generation. Specifically, Future Forcing first constructs a future query proxy from historical statistics, then scores KV cache tokens by their importance under this proxy, and finally merges redundant token pairs within the affine subspace induced by the future query. Extensive experiments show that Future Forcing improves long-horizon consistency under limited KV caches, achieving up to 1.49 improvement in subject consistency on VBench-Long for 60s generation over existing AR video KV cache policies.

Jiaqi Yuan, Jialu Wang, Zihan Wang et al.

Generative search engines represent a transition from traditional ranking-based retrieval to Large Language Model (LLM)-based synthesis, transforming optimization goals from ranking prominence towards content inclusion. Generative Engine Optimization (GEO), specifically, aims to maximize visibility and attribution in black-box summarized outputs by strategically manipulating source content. However, existing methods rely on static heuristics, single-prompt optimization, or engine preference rule distillation that is prone to overfitting. They cannot flexibly adapt to diverse content or the changing behaviors of generative engines. Moreover, effectively optimizing these strategies requires an impractical amount of interaction feedback from the engines. To address these challenges, we propose AgenticGEO, a self-evolving agentic framework formulating optimization as a content-conditioned control problem, which enhances intrinsic content quality to robustly adapt to the unpredictable behaviors of black-box engines. Unlike fixed-strategy methods, AgenticGEO employs a MAP-Elites archive to evolve diverse, compositional strategies. To mitigate interaction costs, we introduce a Co-Evolving Critic, a lightweight surrogate that approximates engine feedback for content-specific strategy selection and refinement, efficiently guiding both evolutionary search and inference-time planning. Through extensive in-domain and cross-domain experiments on two representative engines, AgenticGEO achieves state-of-the-art performance and demonstrates robust transferability, outperforming 14 baselines across 3 datasets. Our code and model are available at: https://github.com/AIcling/agentic_geo.

Cheng Ji, Jianxin Li, Hao Peng et al.

Contrastive Learning (CL) has been proved to be a powerful self-supervised approach for a wide range of domains, including computer vision and graph representation learning. However, the incremental learning issue of CL has rarely been studied, which brings the limitation in applying it to real-world applications. Contrastive learning identifies the samples with the negative ones from the noise distribution that changes in the incremental scenarios. Therefore, only fitting the change of data without noise distribution causes bias, and directly retraining results in low efficiency. To bridge this research gap, we propose a self-supervised Incremental Contrastive Learning (ICL) framework consisting of (i) a novel Incremental InfoNCE (NCE-II) loss function by estimating the change of noise distribution for old data to guarantee no bias with respect to the retraining, (ii) a meta-optimization with deep reinforced Learning Rate Learning (LRL) mechanism which can adaptively learn the learning rate according to the status of the training processes and achieve fast convergence which is critical for incremental learning. Theoretically, the proposed ICL is equivalent to retraining, which is based on solid mathematical derivation. In practice, extensive experiments in different domains demonstrate that, without retraining a new model, ICL achieves up to 16.7x training speedup and 16.8x faster convergence with competitive results.

Zihao Guo, Ligang Zhou, Zeyang Tang et al.

Re-ranking plays a crucial role in modern information search systems by refining the ranking of initial search results to better satisfy user information needs. However, existing methods show two notable limitations in improving user search satisfaction: inadequate modeling of multifaceted user intents and neglect of rich side information such as visual perception signals. To address these challenges, we propose the Rich-Media Re-Ranker framework, which aims to enhance user search satisfaction through multi-dimensional and fine-grained modeling. Our approach begins with a Query Planner that analyzes the sequence of query refinements within a session to capture genuine search intents, decomposing the query into clear and complementary sub-queries to enable broader coverage of users' potential intents. Subsequently, moving beyond primary text content, we integrate richer side information of candidate results, including signals modeling visual content generated by the VLM-based evaluator. These comprehensive signals are then processed alongside carefully designed re-ranking principle that considers multiple facets, including content relevance and quality, information gain, information novelty, and the visual presentation of cover images. Then, the LLM-based re-ranker performs the holistic evaluation based on these principles and integrated signals. To enhance the scenario adaptability of the VLM-based evaluator and the LLM-based re-ranker, we further enhance their capabilities through multi-task reinforcement learning. Extensive experiments demonstrate that our method significantly outperforms state-of-the-art baselines. Notably, the proposed framework has been deployed in a large-scale industrial search system, yielding substantial improvements in online user engagement rates and satisfaction metrics.

Xinyu Zhao, Qingyun Sun, Jiayi Luo et al.

Zero-Shot Anomaly Detection (ZSAD) aims to detect anomalies in unseen domains without target-domain adaptation. Recent CLIP-based methods have shown promising performance by leveraging prompt learning and visual-text alignment. However, most existing approaches rely on a single adaptation pathway, which may be insufficient for heterogeneous anomaly patterns across domains. In practice, anomalies exhibit vastly different characteristics, ranging from salient, localized structural disruptions to subtle, diffuse, and irregular variations. To address this challenge, we propose EntroAD, a structural entropy-guided zero-shot anomaly detection framework. Unlike previous methods, EntroAD introduces a dynamic routing mechanism to process different types of anomalies with specialized adaptation strategies. Specifically, we estimate patch-level structural entropy from self-attention-induced patch relations and use it as a proxy for relational uncertainty to guide anomaly-aware token routing. Based on this routing signal, we construct anomaly-aware routed tokens to better capture anomaly cues with different structural characteristics. We further introduce a confidence-aware dual-branch prompt adaptation module to stabilize visual-text alignment while preserving CLIP's transferable prior. Extensive experiments on 10 industrial and medical benchmarks show that EntroAD achieves state-of-the-art performance in challenging cross-dataset ZSAD settings.

Yi Huang, Qingyun Sun, Jia Li et al.

Relational prediction tasks are fundamental in many real-world applications, where data are naturally stored in relational databases (RDBs). Relational Deep Learning (RDL) addresses this problem by modeling RDBs as graphs and applying graph neural networks (GNNs) for end-to-end learning. However, the full-resolution property is commonly adopted as a design principle in graph construction for RDBs to preserve relational semantics, which leads most existing methods to rely on fixed graph structures. In this paper, we propose FROG, a Full-Resolution and Optimizable Graph Structure Learning} framework for RDL that formulates relational structure learning as a learnable table role modeling problem, allowing tables to contribute as nodes and edges in message passing. We further design role-driven message passing mechanisms to capture relational semantics, enabling joint optimization of graph structure and GNN representations. To ensure semantic consistency, we introduce functional dependency constraints that regularize representations across table and entity levels. Extensive experiments demonstrate that our method outperforms existing approaches and reveal how table roles impact downstream tasks, offering new insights into graph construction for RDL

Haonan Yuan, Qingyun Sun, Jiacheng Tao et al.

Graph Foundation Models (GFMs) have emerged as a frontier in graph learning, which are expected to deliver transferable representations across diverse tasks. However, GFMs remain constrained by in-memory bottlenecks: they attempt to encode knowledge into model parameters, which limits semantic capacity, introduces heavy lossy compression with conflicts, and entangles graph representation with the knowledge in ways that hinder efficient adaptation, undermining scalability and interpretability. In this work,we propose RAG-GFM, a Retrieval-Augmented Generation aided Graph Foundation Model that offloads knowledge from parameters and complements parameterized learning. To externalize graph knowledge, we build a dual-modal unified retrieval module, where a semantic store from prefix-structured text and a structural store from centrality-based motif. To preserve heterogeneous information, we design a dual-view alignment objective that contrasts both modalities to capture both content and relational patterns. To enable efficient downstream adaptation, we perform in-context augmentation to enrich supporting instances with retrieved texts and motifs as contextual evidence. Extensive experiments on five benchmark graph datasets demonstrate that RAG-GFM consistently outperforms 13 state-of-the-art baselines in both cross-domain node and graph classification, achieving superior effectiveness and efficiency.

Yi Huang, Qingyun Sun, Yisen Gao et al.

The Information Bottleneck (IB) principle facilitates effective representation learning by preserving label-relevant information while compressing irrelevant information. However, its strong reliance on accurate labels makes it inherently vulnerable to label noise, prevalent in real-world scenarios, resulting in significant performance degradation and overfitting. To address this issue, we propose LaT-IB, a novel Label-Noise ResistanT Information Bottleneck method which introduces a "Minimal-Sufficient-Clean" (MSC) criterion. Instantiated as a mutual information regularizer to retain task-relevant information while discarding noise, MSC addresses standard IB's vulnerability to noisy label supervision. To achieve this, LaT-IB employs a noise-aware latent disentanglement that decomposes the latent representation into components aligned with to the clean label space and the noise space. Theoretically, we first derive mutual information bounds for each component of our objective including prediction, compression, and disentanglement, and moreover prove that optimizing it encourages representations invariant to input noise and separates clean and noisy label information. Furthermore, we design a three-phase training framework: Warmup, Knowledge Injection and Robust Training, to progressively guide the model toward noise-resistant representations. Extensive experiments demonstrate that LaT-IB achieves superior robustness and efficiency under label noise, significantly enhancing robustness and applicability in real-world scenarios with label noise.

Xinyu Zhao, Qingyun Sun, Jiayi Luo et al.

Graph Anomaly Detection (GAD) aims to identify irregular patterns in graph data, and recent works have explored zero-shot generalist GAD to enable generalization to unseen graph datasets. However, existing zero-shot GAD methods largely ignore intrinsic geometric differences across diverse anomaly patterns, substantially limiting their cross-domain generalization. In this work, we reveal that anomaly detectability is highly dependent on the underlying geometric properties and that embedding graphs from different domains into a single static curvature space can distort the structural signatures of anomalies. To address the challenge that a single curvature space cannot capture geometry-dependent graph anomaly patterns, we propose GAD-MoRE, a novel framework for zero-shot Generalizable Graph Anomaly Detection with a Mixture of Riemannian Experts architecture. Specifically, to ensure that each anomaly pattern is modeled in the Riemannian space where it is most detectable, GAD-MoRE employs a set of specialized Riemannian expert networks, each operating in a distinct curvature space. To align raw node features with curvature-specific anomaly characteristics, we introduce an anomaly-aware multi-curvature feature alignment module that projects inputs into parallel Riemannian spaces, enabling the capture of diverse geometric characteristics. Finally, to facilitate better generalization beyond seen patterns, we design a memory-based dynamic router that adaptively assigns each input to the most compatible expert based on historical reconstruction performance on similar anomalies. Extensive experiments in the zero-shot setting demonstrate that GAD-MoRE significantly outperforms state-of-the-art generalist GAD baselines, and even surpasses strong competitors that are few-shot fine-tuned with labeled data from the target domain.

Xingcheng Fu, Shengpeng Wang, Yisen Gao et al.

Knowledge Tracing (KT) diagnoses students' concept mastery through continuous learning state monitoring in education.Existing methods primarily focus on studying behavioral sequences based on ID or textual information.While existing methods rely on ID-based sequences or shallow textual features, they often fail to capture (1) the hierarchical evolution of cognitive states and (2) individualized problem difficulty perception due to limited semantic modeling. Therefore, this paper proposes a Large Language Model Hyperbolic Aligned Knowledge Tracing(L-HAKT). First, the teacher agent deeply parses question semantics and explicitly constructs hierarchical dependencies of knowledge points; the student agent simulates learning behaviors to generate synthetic data. Then, contrastive learning is performed between synthetic and real data in hyperbolic space to reduce distribution differences in key features such as question difficulty and forgetting patterns. Finally, by optimizing hyperbolic curvature, we explicitly model the tree-like hierarchical structure of knowledge points, precisely characterizing differences in learning curve morphology for knowledge points at different levels. Extensive experiments on four real-world educational datasets validate the effectiveness of our Large Language Model Hyperbolic Aligned Knowledge Tracing (L-HAKT) framework.

Haonan Yuan, Qingyun Sun, Junhua Shi et al.

Inspired by the remarkable success of foundation models in language and vision, Graph Foundation Models (GFMs) hold significant promise for broad applicability across diverse graph tasks and domains. However, existing GFMs struggle with unstable few-shot fine-tuning, where both performance and adaptation efficiency exhibit significant fluctuations caused by the randomness in the support sample selection and structural discrepancies between the pre-trained and target graphs. How to fine-tune GFMs robustly and efficiently to enable trustworthy knowledge transfer across domains and tasks is the major challenge. In this paper, we propose GRAVER, a novel Generative gRAph VocabulariEs for Robust GFM fine-tuning framework that tackles the aforementioned instability via generative augmentations. Specifically, to identify transferable units, we analyze and extract key class-specific subgraph patterns by ego-graph disentanglement and validate their transferability both theoretically and empirically. To enable effective pre-training across diverse domains, we leverage a universal task template based on ego-graph similarity and construct graph vocabularies via graphon-based generative experts. To facilitate robust and efficient prompt fine-tuning, we grave the support samples with in-context vocabularies, where the lightweight MoE-CoE network attentively routes knowledge from source domains. Extensive experiments demonstrate the superiority of GRAVER over effectiveness, robustness, and efficiency on downstream few-shot node and graph classification tasks compared with 15 state-of-the-art baselines.

Qingyun Sun, Jiayi Luo, Haonan Yuan et al.

Graph neural networks have shown remarkable success in exploiting the spatial and temporal patterns on dynamic graphs. However, existing GNNs exhibit poor generalization ability under distribution shifts, which is inevitable in dynamic scenarios. As dynamic graph generation progresses amid evolving latent non-stationary environments, it is imperative to explore their effects on out-of-distribution (OOD) generalization. This paper proposes a novel Evolving Graph Learning framework for OOD generalization (EvoOOD) by environment-aware invariant pattern recognition. Specifically, we first design an environment sequential variational auto-encoder to model environment evolution and infer the underlying environment distribution. Then, we introduce a mechanism for environment-aware invariant pattern recognition, tailored to address environmental diversification through inferred distributions. Finally, we conduct fine-grained causal interventions on individual nodes using a mixture of instantiated environment samples. This approach helps to distinguish spatio-temporal invariant patterns for OOD prediction, especially in non-stationary environments. Experimental results demonstrate the superiority of EvoGOOD on both real-world and synthetic dynamic datasets under distribution shifts. To the best of our knowledge, it is the first attempt to study the dynamic graph OOD generalization problem from the environment evolution perspective.

Zihao Guo, Qingyun Sun, Ziwei Zhang et al.

Graph incremental learning (GIL), which continuously updates graph models by sequential knowledge acquisition, has garnered significant interest recently. However, existing GIL approaches focus on task-incremental and class-incremental scenarios within a single domain. Graph domain-incremental learning (Domain-IL), aiming at updating models across multiple graph domains, has become critical with the development of graph foundation models (GFMs), but remains unexplored in the literature. In this paper, we propose Graph Domain-Incremental Learning via Knowledge Dientanglement and Preservation (GraphKeeper), to address catastrophic forgetting in Domain-IL scenario from the perspectives of embedding shifts and decision boundary deviations. Specifically, to prevent embedding shifts and confusion across incremental graph domains, we first propose the domain-specific parameter-efficient fine-tuning together with intra- and inter-domain disentanglement objectives. Consequently, to maintain a stable decision boundary, we introduce deviation-free knowledge preservation to continuously fit incremental domains. Additionally, for graphs with unobservable domains, we perform domain-aware distribution discrimination to obtain precise embeddings. Extensive experiments demonstrate the proposed GraphKeeper achieves state-of-the-art results with 6.5%~16.6% improvement over the runner-up with negligible forgetting. Moreover, we show GraphKeeper can be seamlessly integrated with various representative GFMs, highlighting its broad applicative potential.

Jiayi Luo, Qingyun Sun, Beining Yang et al.

Graph condensation (GC) has gained significant attention for its ability to synthesize smaller yet informative graphs. However, existing studies often overlook the robustness of GC in scenarios where the original graph is corrupted. In such cases, we observe that the performance of GC deteriorates significantly, while existing robust graph learning technologies offer only limited effectiveness. Through both empirical investigation and theoretical analysis, we reveal that GC is inherently an intrinsic-dimension-reducing process, synthesizing a condensed graph with lower classification complexity. Although this property is critical for effective GC performance, it remains highly vulnerable to adversarial perturbations. To tackle this vulnerability and improve GC robustness, we adopt the geometry perspective of graph data manifold and propose a novel Manifold-constrained Robust Graph Condensation framework named MRGC. Specifically, we introduce three graph data manifold learning modules that guide the condensed graph to lie within a smooth, low-dimensional manifold with minimal class ambiguity, thereby preserving the classification complexity reduction capability of GC and ensuring robust performance under universal adversarial attacks. Extensive experiments demonstrate the robustness of \ModelName\ across diverse attack scenarios.

Chuanyue Yu, Jiahui Wang, Yuhan Li et al.

Diffusion Language Models (DLMs) have recently demonstrated remarkable capabilities in natural language processing tasks. However, the potential of Retrieval-Augmented Generation (RAG), which shows great successes for enhancing large language models (LLMs), has not been well explored, due to the fundamental difference between LLM and DLM decoding. To fill this critical gap, we systematically test the performance of DLMs within the RAG framework. Our findings reveal that DLMs coupled with RAG show promising potentials with stronger dependency on contextual information, but suffer from limited generation precision. We identify a key underlying issue: Response Semantic Drift (RSD), where the generated answer progressively deviates from the query's original semantics, leading to low precision content. We trace this problem to the denoising strategies in DLMs, which fail to maintain semantic alignment with the query throughout the iterative denoising process. To address this, we propose Semantic-Preserving REtrieval-Augmented Diffusion (SPREAD), a novel framework that introduces a query-relevance-guided denoising strategy. By actively guiding the denoising trajectory, SPREAD ensures the generation remains anchored to the query's semantics and effectively suppresses drift. Experimental results demonstrate that SPREAD significantly enhances the precision and effectively mitigates RSD of generated answers within the RAG framework.

Jiayi Luo, Jiayu Chen, Jiankun Wang et al.

Diffusion Transformers (DiTs) achieve strong video generation quality but suffer from high inference cost due to dense 3D attention, leading to the development of sparse attention technologies to improve efficiency. However, existing training-free sparse attention methods in video generation still face two unresolved limitations: ignoring layer heterogeneity in attention pruning and ignoring query-key coupling in block partitioning, which hinder a better quality-speedup trade-off. In this work, we uncover a critical insight that the attention sparsity of each layer is its intrinsic property, with minor effects across different inputs. Motivated by this, we propose SVOO, a training-free Sparse attention framework for fast Video generation via Offline layer-wise sparsity profiling and Online bidirectional co-clustering. Specifically, SVOO adopts a two-stage paradigm: (i) offline layer-wise sensitivity profiling to derive intrinsic per-layer pruning levels, and (ii) online block-wise sparse attention via a novel bidirectional co-clustering algorithm. Extensive experiments on seven widely used video generation models demonstrate that SVOO achieves a superior quality-speedup trade-off over state-of-the-art methods, delivering up to $1.93\times$ speedup while maintaining a PSNR of up to 29 dB on Wan2.1.

Haonan Yuan, Qingyun Sun, Junhua Shi et al.

Dynamic graphs are ubiquitous in real-world systems, and building generalizable dynamic Graph Foundation Models has become a frontier in graph learning. However, dynamic graphs from different domains pose fundamental challenges to unified modeling, as their semantic and temporal patterns are inherently inconsistent, making the multi-domain pre-training difficult. Consequently, the widely used "pretrain-then-finetune" paradigm often suffers from severe negative knowledge transfer. To the best of our knowledge, there exists no multi-domain dynamic GFM. In this work, we propose DyGFM, a Dynamic Graph Foundation Model over multiple domains based on decoupled and divergence-conditioned prompting. To disentangle transferable semantics from the domain-specific dynamics, we introduce a dual-branch pre-training strategy with semantic-temporal decoupling. To alleviate negative transfer during domain adaptation, we further develop a cross-domain routing mechanism with divergence-aware expert selection. To enable efficient downstream fine-tuning, we design a divergence-conditioned prompt generator that injects lightweight, learnable graph prompts tailored to semantic and temporal traits. Extensive experiments on continuous dynamic graph benchmarks demonstrate that DyGFM consistently outperforms 12 state-of-the-art baselines on both node classification and link prediction tasks, achieving superior effectiveness and efficiency.

Qingyun Sun, Zhen Guo, PIN AI Team

We propose a scaling law hypothesis for multimodal models processing text, audio, images, and video within a shared token and embedding space. Our framework predicts model performance based on modality-specific compression and tokenization efficiency, extending established scaling laws from text-based decoder models to mixed-modality systems. We explore whether leveraging more training data in multiple modalities can reduce the size of the multimodal model, enabling efficient deployment on resource-constrained devices.

Qingyun Sun, Jiaqi Yuan, Shan He et al.

Graph Retrieval-Augmented Generation has emerged as a powerful paradigm for grounding large language models with external structured knowledge. However, existing Graph RAG methods struggle with temporal reasoning, due to their inability to model the evolving structure and order of real-world events. In this work, we introduce DyG-RAG, a novel event-centric dynamic graph retrieval-augmented generation framework designed to capture and reason over temporal knowledge embedded in unstructured text. To eliminate temporal ambiguity in traditional retrieval units, DyG-RAG proposes Dynamic Event Units (DEUs) that explicitly encode both semantic content and precise temporal anchors, enabling accurate and interpretable time-aware retrieval. To capture temporal and causal dependencies across events, DyG-RAG constructs an event graph by linking DEUs that share entities and occur close in time, supporting efficient and meaningful multi-hop reasoning. To ensure temporally consistent generation, DyG-RAG introduces an event timeline retrieval pipeline that retrieves event sequences via time-aware traversal, and proposes a Time Chain-of-Thought strategy for temporally grounded answer generation. This unified pipeline enables DyG-RAG to retrieve coherent, temporally ordered event sequences and to answer complex, time-sensitive queries that standard RAG systems cannot resolve. Extensive experiments on temporal QA benchmarks demonstrate that DyG-RAG significantly improves the accuracy and recall of three typical types of temporal reasoning questions, paving the way for more faithful and temporal-aware generation. DyG-RAG is available at https://github.com/RingBDStack/DyG-RAG.

Qingyun Sun, Ziying Chen, Beining Yang et al.

Graph condensation (GC) has recently garnered considerable attention due to its ability to reduce large-scale graph datasets while preserving their essential properties. The core concept of GC is to create a smaller, more manageable graph that retains the characteristics of the original graph. Despite the proliferation of graph condensation methods developed in recent years, there is no comprehensive evaluation and in-depth analysis, which creates a great obstacle to understanding the progress in this field. To fill this gap, we develop a comprehensive Graph Condensation Benchmark (GC-Bench) to analyze the performance of graph condensation in different scenarios systematically. Specifically, GC-Bench systematically investigates the characteristics of graph condensation in terms of the following dimensions: effectiveness, transferability, and complexity. We comprehensively evaluate 12 state-of-the-art graph condensation algorithms in node-level and graph-level tasks and analyze their performance in 12 diverse graph datasets. Further, we have developed an easy-to-use library for training and evaluating different GC methods to facilitate reproducible research. The GC-Bench library is available at https://github.com/RingBDStack/GC-Bench.

Jiawen Qin, Haonan Yuan, Qingyun Sun et al.

Deep graph learning has gained grand popularity over the past years due to its versatility and success in representing graph data across a wide range of domains. However, the pervasive issue of imbalanced graph data distributions, where certain parts exhibit disproportionally abundant data while others remain sparse, undermines the efficacy of conventional graph learning algorithms, leading to biased outcomes. To address this challenge, Imbalanced Graph Learning (IGL) has garnered substantial attention, enabling more balanced data distributions and better task performance. Despite the proliferation of IGL algorithms, the absence of consistent experimental protocols and fair performance comparisons pose a significant barrier to comprehending advancements in this field. To bridge this gap, we introduce IGL-Bench, a foundational comprehensive benchmark for imbalanced graph learning, embarking on 16 diverse graph datasets and 24 distinct IGL algorithms with uniform data processing and splitting strategies. Specifically, IGL-Bench systematically investigates state-of-the-art IGL algorithms in terms of effectiveness, robustness, and efficiency on node-level and graph-level tasks, with the scope of class-imbalance and topology-imbalance. Extensive experiments demonstrate the potential benefits of IGL algorithms on various imbalanced conditions, offering insights and opportunities in the IGL field. Further, we have developed an open-sourced and unified package to facilitate reproducible evaluation and inspire further innovative research, which is available at https://github.com/RingBDStack/IGL-Bench.

Haonan Yuan, Qingyun Sun, Xingcheng Fu et al.

Dynamic Graphs widely exist in the real world, which carry complicated spatial and temporal feature patterns, challenging their representation learning. Dynamic Graph Neural Networks (DGNNs) have shown impressive predictive abilities by exploiting the intrinsic dynamics. However, DGNNs exhibit limited robustness, prone to adversarial attacks. This paper presents the novel Dynamic Graph Information Bottleneck (DGIB) framework to learn robust and discriminative representations. Leveraged by the Information Bottleneck (IB) principle, we first propose the expected optimal representations should satisfy the Minimal-Sufficient-Consensual (MSC) Condition. To compress redundant as well as conserve meritorious information into latent representation, DGIB iteratively directs and refines the structural and feature information flow passing through graph snapshots. To meet the MSC Condition, we decompose the overall IB objectives into DGIB$_{MS}$ and DGIB$_C$, in which the DGIB$_{MS}$ channel aims to learn the minimal and sufficient representations, with the DGIB$_{MS}$ channel guarantees the predictive consensus. Extensive experiments on real-world and synthetic dynamic graph datasets demonstrate the superior robustness of DGIB against adversarial attacks compared with state-of-the-art baselines in the link prediction task. To the best of our knowledge, DGIB is the first work to learn robust representations of dynamic graphs grounded in the information-theoretic IB principle.

Zihao Guo, Qingyun Sun, Haonan Yuan et al.

Real-world graphs have inherently complex and diverse topological patterns, known as topological heterogeneity. Most existing works learn graph representation in a single constant curvature space that is insufficient to match the complex geometric shapes, resulting in low-quality embeddings with high distortion. This also constitutes a critical challenge for graph foundation models, which are expected to uniformly handle a wide variety of diverse graph data. Recent studies have indicated that product manifold gains the possibility to address topological heterogeneity. However, the product manifold is still homogeneous, which is inadequate and inflexible for representing the mixed heterogeneous topology. In this paper, we propose a novel Graph Mixture of Riemannian Experts (GraphMoRE) framework to effectively tackle topological heterogeneity by personalized fine-grained topology geometry pattern preservation. Specifically, to minimize the embedding distortion, we propose a topology-aware gating mechanism to select the optimal embedding space for each node. By fusing the outputs of diverse Riemannian experts with learned gating weights, we construct personalized mixed curvature spaces for nodes, effectively embedding the graph into a heterogeneous manifold with varying curvatures at different points. Furthermore, to fairly measure pairwise distances between different embedding spaces, we present a concise and effective alignment strategy. Extensive experiments on real-world and synthetic datasets demonstrate that our method achieves superior performance with lower distortion, highlighting its potential for modeling complex graphs with topological heterogeneity, and providing a novel architectural perspective for graph foundation models.

Yuecen Wei, Haonan Yuan, Xingcheng Fu et al.

Hierarchy is an important and commonly observed topological property in real-world graphs that indicate the relationships between supervisors and subordinates or the organizational behavior of human groups. As hierarchy is introduced as a new inductive bias into the Graph Neural Networks (GNNs) in various tasks, it implies latent topological relations for attackers to improve their inference attack performance, leading to serious privacy leakage issues. In addition, existing privacy-preserving frameworks suffer from reduced protection ability in hierarchical propagation due to the deficiency of adaptive upper-bound estimation of the hierarchical perturbation boundary. It is of great urgency to effectively leverage the hierarchical property of data while satisfying privacy guarantees. To solve the problem, we propose the Poincaré Differential Privacy framework, named PoinDP, to protect the hierarchy-aware graph embedding based on hyperbolic geometry. Specifically, PoinDP first learns the hierarchy weights for each entity based on the Poincaré model in hyperbolic space. Then, the Personalized Hierarchy-aware Sensitivity is designed to measure the sensitivity of the hierarchical structure and adaptively allocate the privacy protection strength. Besides, the Hyperbolic Gaussian Mechanism (HGM) is proposed to extend the Gaussian mechanism in Euclidean space to hyperbolic space to realize random perturbations that satisfy differential privacy under the hyperbolic space metric. Extensive experiment results on five real-world datasets demonstrate the proposed PoinDP's advantages of effective privacy protection while maintaining good performance on the node classification task.

Feihong Lu, Weiqi Wang, Yangyifei Luo et al.

Social media has become a ubiquitous tool for connecting with others, staying updated with news, expressing opinions, and finding entertainment. However, understanding the intention behind social media posts remains challenging due to the implicitness of intentions in social media posts, the need for cross-modality understanding of both text and images, and the presence of noisy information such as hashtags, misspelled words, and complicated abbreviations. To address these challenges, we present MIKO, a Multimodal Intention Kowledge DistillatiOn framework that collaboratively leverages a Large Language Model (LLM) and a Multimodal Large Language Model (MLLM) to uncover users' intentions. Specifically, we use an MLLM to interpret the image and an LLM to extract key information from the text and finally instruct the LLM again to generate intentions. By applying MIKO to publicly available social media datasets, we construct an intention knowledge base featuring 1,372K intentions rooted in 137,287 posts. We conduct a two-stage annotation to verify the quality of the generated knowledge and benchmark the performance of widely used LLMs for intention generation. We further apply MIKO to a sarcasm detection dataset and distill a student model to demonstrate the downstream benefits of applying intention knowledge.

Haonan Yuan, Qingyun Sun, Zhaonan Wang et al.

Dynamic graphs exhibit intertwined spatio-temporal evolutionary patterns, widely existing in the real world. Nevertheless, the structure incompleteness, noise, and redundancy result in poor robustness for Dynamic Graph Neural Networks (DGNNs). Dynamic Graph Structure Learning (DGSL) offers a promising way to optimize graph structures. However, aside from encountering unacceptable quadratic complexity, it overly relies on heuristic priors, making it hard to discover underlying predictive patterns. How to efficiently refine the dynamic structures, capture intrinsic dependencies, and learn robust representations, remains under-explored. In this work, we propose the novel DG-Mamba, a robust and efficient Dynamic Graph structure learning framework with the Selective State Space Models (Mamba). To accelerate the spatio-temporal structure learning, we propose a kernelized dynamic message-passing operator that reduces the quadratic time complexity to linear. To capture global intrinsic dynamics, we establish the dynamic graph as a self-contained system with State Space Model. By discretizing the system states with the cross-snapshot graph adjacency, we enable the long-distance dependencies capturing with the selective snapshot scan. To endow learned dynamic structures more expressive with informativeness, we propose the self-supervised Principle of Relevant Information for DGSL to regularize the most relevant yet least redundant information, enhancing global robustness. Extensive experiments demonstrate the superiority of the robustness and efficiency of our DG-Mamba compared with the state-of-the-art baselines against adversarial attacks.

Yuecen Wei, Xingcheng Fu, Lingyun Liu et al.

Graph neural networks (GNNs) provide important prospective insights in applications such as social behavior analysis and financial risk analysis based on their powerful learning capabilities on graph data. Nevertheless, GNNs' predictive performance relies on the quality of task-specific node labels, so it is common practice to improve the model's generalization ability in the downstream execution of decision-making tasks through pre-training. Graph prompting is a prudent choice but risky without taking measures to prevent data leakage. In other words, in high-risk decision scenarios, prompt learning can infer private information by accessing model parameters trained on private data (publishing model parameters in pre-training, i.e., without directly leaking the raw data, is a tacitly accepted trend). However, myriad graph inference attacks necessitate tailored module design and processing to enhance inference capabilities due to variations in supervision signals. In this paper, we propose a novel Prompt-based unifying Inference Attack framework on GNNs, named ProIA. Specifically, ProIA retains the crucial topological information of the graph during pre-training, enhancing the background knowledge of the inference attack model. It then utilizes a unified prompt and introduces additional disentanglement factors in downstream attacks to adapt to task-relevant knowledge. Finally, extensive experiments show that ProIA enhances attack capabilities and demonstrates remarkable adaptability to various inference attacks.

Yisen Gao, Jiaxin Bai, Tianshi Zheng et al.

Abductive reasoning in knowledge graphs aims to generate plausible logical hypotheses from observed entities, with broad applications in areas such as clinical diagnosis and scientific discovery. However, due to a lack of controllability, a single observation may yield numerous plausible but redundant or irrelevant hypotheses on large-scale knowledge graphs. To address this limitation, we introduce the task of controllable hypothesis generation to improve the practical utility of abductive reasoning. This task faces two key challenges when controlling for generating long and complex logical hypotheses: hypothesis space collapse and hypothesis oversensitivity. To address these challenges, we propose CtrlHGen, a Controllable logcial Hypothesis Generation framework for abductive reasoning over knowledge graphs, trained in a two-stage paradigm including supervised learning and subsequent reinforcement learning. To mitigate hypothesis space collapse, we design a dataset augmentation strategy based on sub-logical decomposition, enabling the model to learn complex logical structures by leveraging semantic patterns in simpler components. To address hypothesis oversensitivity, we incorporate smoothed semantic rewards including Dice and Overlap scores, and introduce a condition-adherence reward to guide the generation toward user-specified control constraints. Extensive experiments on three benchmark datasets demonstrate that our model not only better adheres to control conditions but also achieves superior semantic similarity performance compared to baselines.

Xingcheng Fu, Jian Wang, Yisen Gao et al.

Graph neural networks(GNNs) have been demonstrated to depend on whether the node effective information is sufficiently passing. Discrete curvature (Ricci curvature) is used to study graph connectivity and information propagation efficiency with a geometric perspective, and has been raised in recent years to explore the efficient message-passing structure of GNNs. However, most empirical studies are based on directly observed graph structures or heuristic topological assumptions and lack in-depth exploration of underlying optimal information transport structures for downstream tasks. We suggest that graph curvature optimization is more in-depth and essential than directly rewiring or learning for graph structure with richer message-passing characterization and better information transport interpretability. From both graph geometry and information theory perspectives, we propose the novel Discrete Curvature Graph Information Bottleneck (CurvGIB) framework to optimize the information transport structure and learn better node representations simultaneously. CurvGIB advances the Variational Information Bottleneck (VIB) principle for Ricci curvature optimization to learn the optimal information transport pattern for specific downstream tasks. The learned Ricci curvature is used to refine the optimal transport structure of the graph, and the node representation is fully and efficiently learned. Moreover, for the computational complexity of Ricci curvature differentiation, we combine Ricci flow and VIB to deduce a curvature optimization approximation to form a tractable IB objective function. Extensive experiments on various datasets demonstrate the superior effectiveness and interpretability of CurvGIB.

Xingcheng Fu, Yisen Gao, Beining Yang et al.

Dataset condensation has significantly improved model training efficiency, but its application on devices with different computing power brings new requirements for different data sizes. Thus, condensing multiple scale graphs simultaneously is the core of achieving efficient training in different on-device scenarios. Existing efficient works for multi-scale graph dataset condensation mainly perform efficient approximate computation in scale order (large-to-small or small-to-large scales). However, for non-Euclidean structures of sparse graph data, these two commonly used paradigms for multi-scale graph dataset condensation have serious scaling down degradation and scaling up collapse problems of a graph. The main bottleneck of the above paradigms is whether the effective information of the original graph is fully preserved when consenting to the primary sub-scale (the first of multiple scales), which determines the condensation effect and consistency of all scales. In this paper, we proposed a novel GNN-centric Bi-directional Multi-Scale Graph Dataset Condensation (BiMSGC) framework, to explore unifying paradigms by operating on both large-to-small and small-to-large for multi-scale graph condensation. Based on the mutual information theory, we estimate an optimal ``meso-scale'' to obtain the minimum necessary dense graph preserving the maximum utility information of the original graph, and then we achieve stable and consistent ``bi-directional'' condensation learning by optimizing graph eigenbasis matching with information bottleneck on other scales. Encouraging empirical results on several datasets demonstrates the significant superiority of the proposed framework in graph condensation at different scales.

Haonan Yuan, Qingyun Sun, Junhua Shi et al.

Graph-based retrieval-augmented generation (GraphRAG) exploits structured knowledge to support knowledge-intensive reasoning. However, most existing methods treat graphs as intermediate artifacts, and the few subgraph-based retrieval methods depend on heuristic rules coupled with domain-specific distributions. They fail in typical cold-start scenarios where data in target domains is scarce, thus yielding reasoning contexts that are either informationally incomplete or structurally redundant. In this work, we revisit retrieval from a structural perspective, and propose GFM-Retriever that directly responds to user queries with a subgraph, where a pre-trained Graph Foundation Model acts as a cross-domain Retriever for multi-hop path-aware reasoning. Building on this perspective, we repurpose a pre-trained GFM from an entity ranking function into a generalized retriever to support cross-domain retrieval. On top of the retrieved graph, we further derive a label-free subgraph selector optimized by a principled Information Bottleneck objective to identify the query-conditioned subgraph, which contains informationally sufficient and structurally minimal golden evidence in a self-contained "core set". To connect structure with generation, we explicitly extract and reorganize relational paths as in-context prompts, enabling interpretable reasoning. Extensive experiments on multi-hop question answering benchmarks demonstrate that GFM-Retriever achieves state-of-the-art performance in both retrieval quality and answer generation, while maintaining efficiency.

Jiawen Qin, Pengfeng Huang, Qingyun Sun et al.

Graph is a prevalent data structure employed to represent the relationships between entities, frequently serving as a tool to depict and simulate numerous systems, such as molecules and social networks. However, real-world graphs usually suffer from the size-imbalanced problem in the multi-graph classification, i.e., a long-tailed distribution with respect to the number of nodes. Recent studies find that off-the-shelf Graph Neural Networks (GNNs) would compromise model performance under the long-tailed settings. We investigate this phenomenon and discover that the long-tailed graph distribution greatly exacerbates the discrepancies in structural features. To alleviate this problem, we propose a novel energy-based size-imbalanced learning framework named \textbf{SIMBA}, which smooths the features between head and tail graphs and re-weights them based on the energy propagation. Specifically, we construct a higher-level graph abstraction named \textit{Graphs-to-Graph} according to the correlations between graphs to link independent graphs and smooths the structural discrepancies. We further devise an energy-based message-passing belief propagation method for re-weighting lower compatible graphs in the training process and further smooth local feature discrepancies. Extensive experimental results over five public size-imbalanced datasets demonstrate the superior effectiveness of the model for size-imbalanced graph classification tasks.

Ziming Wang, Zeyu Shi, Haoyi Zhou et al.

Fine-tuned Large Language Models (LLMs) often demonstrate poor calibration, with their confidence scores misaligned with actual performance. While calibration has been extensively studied in models trained from scratch, the impact of LLMs' prior knowledge on calibration during fine-tuning remains understudied. Our research reveals that LLMs' prior knowledge causes potential poor calibration due to the ubiquitous presence of known data in real-world fine-tuning, which appears harmful for calibration. Specifically, data aligned with LLMs' prior knowledge would induce overconfidence, while new knowledge improves calibration. Our findings expose a tension: LLMs' encyclopedic knowledge, while enabling task versatility, undermines calibration through unavoidable knowledge overlaps. To address this, we propose CogCalib, a cognition-aware framework that applies targeted learning strategies according to the model's prior knowledge. Experiments across 7 tasks using 3 LLM families prove that CogCalib significantly improves calibration while maintaining performance, achieving an average 57\% reduction in ECE compared to standard fine-tuning in Llama3-8B. These improvements generalize well to out-of-domain tasks, enhancing the objectivity and reliability of domain-specific LLMs, and making them more trustworthy for critical human-AI interaction applications.

Jiayi Luo, Qingyun Sun, Haonan Yuan et al.

Adversarial evasion attacks pose significant threats to graph learning, with lines of studies that have improved the robustness of Graph Neural Networks (GNNs). However, existing works rely on priors about clean graphs or attacking strategies, which are often heuristic and inconsistent. To achieve robust graph learning over different types of evasion attacks and diverse datasets, we investigate this problem from a prior-free structure purification perspective. Specifically, we propose a novel Diffusion-based Structure Purification framework named DiffSP, which creatively incorporates the graph diffusion model to learn intrinsic distributions of clean graphs and purify the perturbed structures by removing adversaries under the direction of the captured predictive patterns without relying on priors. DiffSP is divided into the forward diffusion process and the reverse denoising process, during which structure purification is achieved. To avoid valuable information loss during the forward process, we propose an LID-driven nonisotropic diffusion mechanism to selectively inject noise anisotropically. To promote semantic alignment between the clean graph and the purified graph generated during the reverse process, we reduce the generation uncertainty by the proposed graph transfer entropy guided denoising mechanism. Extensive experiments demonstrate the superior robustness of DiffSP against evasion attacks.

Zeyu Shi, Ziming Wang, Tianyu Chen et al.

The honesty of Large Language Models (LLMs) is increasingly important for safe deployment in high-stakes domains. However, this crucial trait is severely undermined by supervised fine-tuning (SFT), a common technique for model specialization. Existing recovery methods rely on data-intensive global parameter adjustments, implicitly assuming that SFT deeply corrupts the models' ability to recognize their knowledge boundaries. However, we observe that fine-tuned LLMs still preserve this ability; what is damaged is their capacity to faithfully express that awareness. Building on this, we propose Honesty-Critical Neurons Restoration (HCNR) to surgically repair this suppressed capacity. HCNR identifies and restores key expression-governing neurons to their pre-trained state while harmonizing them with task-oriented neurons via Hessian-guided compensation. Experiments on four QA tasks and five LLM families demonstrate that HCNR effectively recovers 33.25% of the compromised honesty while achieving at least 2.23x speedup with over 10x less data compared to baseline methods, offering a practical solution for trustworthy LLM deployment.

Junhua Shi, Qingyun Sun, Haonan Yuan et al.

We present Graph Foundation Models (GFMs) which have made significant progress in various tasks, but their robustness against domain noise, structural perturbations, and adversarial attacks remains underexplored. A key limitation is the insufficient modeling of hierarchical structural semantics, which are crucial for generalization. In this paper, we propose SA$^{2}$GFM, a robust GFM framework that improves domain-adaptive representations through Structure-Aware Semantic Augmentation. First, we encode hierarchical structural priors by transforming entropy-based encoding trees into structure-aware textual prompts for feature augmentation. The enhanced inputs are processed by a self-supervised Information Bottleneck mechanism that distills robust, transferable representations via structure-guided compression. To address negative transfer in cross-domain adaptation, we introduce an expert adaptive routing mechanism, combining a mixture-of-experts architecture with a null expert design. For efficient downstream adaptation, we propose a fine-tuning module that optimizes hierarchical structures through joint intra- and inter-community structure learning. Extensive experiments demonstrate that SA$^{2}$GFM outperforms 9 state-of-the-art baselines in terms of effectiveness and robustness against random noise and adversarial perturbations for node and graph classification.

Jiayi Luo, Qingyun Sun, Yuecen Wei et al.

Multi-domain graph pre-training has emerged as a pivotal technique in developing graph foundation models. While it greatly improves the generalization of graph neural networks, its privacy risks under membership inference attacks (MIAs), which aim to identify whether a specific instance was used in training (member), remain largely unexplored. However, effectively conducting MIAs against multi-domain graph pre-trained models is a significant challenge due to: (i) Enhanced Generalization Capability: Multi-domain pre-training reduces the overfitting characteristics commonly exploited by MIAs. (ii) Unrepresentative Shadow Datasets: Diverse training graphs hinder the obtaining of reliable shadow graphs. (iii) Weakened Membership Signals: Embedding-based outputs offer less informative cues than logits for MIAs. To tackle these challenges, we propose MGP-MIA, a novel framework for Membership Inference Attacks against Multi-domain Graph Pre-trained models. Specifically, we first propose a membership signal amplification mechanism that amplifies the overfitting characteristics of target models via machine unlearning. We then design an incremental shadow model construction mechanism that builds a reliable shadow model with limited shadow graphs via incremental learning. Finally, we introduce a similarity-based inference mechanism that identifies members based on their similarity to positive and negative samples. Extensive experiments demonstrate the effectiveness of our proposed MGP-MIA and reveal the privacy risks of multi-domain graph pre-training.

Jiayi Luo, Qingyun Sun, Lingjuan Lyu et al.

Graph Foundation Models (GFMs) are pre-trained on diverse source domains and adapted to unseen targets, enabling broad generalization for graph machine learning. Despite that GFMs have attracted considerable attention recently, their vulnerability to backdoor attacks remains largely underexplored. A compromised GFM can introduce backdoor behaviors into downstream applications, posing serious security risks. However, launching backdoor attacks against GFMs is non-trivial due to three key challenges. (1) Effectiveness: Attackers lack knowledge of the downstream task during pre-training, complicating the assurance that triggers reliably induce misclassifications into desired classes. (2) Stealthiness: The variability in node features across domains complicates trigger insertion that remains stealthy. (3) Persistence: Downstream fine-tuning may erase backdoor behaviors by updating model parameters. To address these challenges, we propose GFM-BA, a novel Backdoor Attack model against Graph Foundation Models. Specifically, we first design a label-free trigger association module that links the trigger to a set of prototype embeddings, eliminating the need for knowledge about downstream tasks to perform backdoor injection. Then, we introduce a node-adaptive trigger generator, dynamically producing node-specific triggers, reducing the risk of trigger detection while reliably activating the backdoor. Lastly, we develop a persistent backdoor anchoring module that firmly anchors the backdoor to fine-tuning-insensitive parameters, enhancing the persistence of the backdoor under downstream adaptation. Extensive experiments demonstrate the effectiveness, stealthiness, and persistence of GFM-BA.

Yisen Gao, Jiaxin Bai, Yi Huang et al.

Deductive and abductive reasoning are two critical paradigms for analyzing knowledge graphs, enabling applications from financial query answering to scientific discovery. Deductive reasoning on knowledge graphs usually involves retrieving entities that satisfy a complex logical query, while abductive reasoning generates plausible logical hypotheses from observations. Despite their clear synergistic potential, where deduction can validate hypotheses and abduction can uncover deeper logical patterns, existing methods address them in isolation. To bridge this gap, we propose DARK, a unified framework for Deductive and Abductive Reasoning in Knowledge graphs. As a masked diffusion model capable of capturing the bidirectional relationship between queries and conclusions, DARK has two key innovations. First, to better leverage deduction for hypothesis refinement during abductive reasoning, we introduce a self-reflective denoising process that iteratively generates and validates candidate hypotheses against the observed conclusion. Second, to discover richer logical associations, we propose a logic-exploration reinforcement learning approach that simultaneously masks queries and conclusions, enabling the model to explore novel reasoning compositions. Extensive experiments on multiple benchmark knowledge graphs show that DARK achieves state-of-the-art performance on both deductive and abductive reasoning tasks, demonstrating the significant benefits of our unified approach.

Yisen Gao, Xingcheng Fu, Qingyun Sun et al.

Graph diffusion models have made significant progress in learning structured graph data and have demonstrated strong potential for predictive tasks. Existing approaches typically embed node, edge, and graph-level features into a unified latent space, modeling prediction tasks including classification and regression as a form of conditional generation. However, due to the non-Euclidean nature of graph data, features of different curvatures are entangled in the same latent space without releasing their geometric potential. To address this issue, we aim to construt an ideal Riemannian diffusion model to capture distinct manifold signatures of complex graph data and learn their distribution. This goal faces two challenges: numerical instability caused by exponential mapping during the encoding proces and manifold deviation during diffusion generation. To address these challenges, we propose GeoMancer: a novel Riemannian graph diffusion framework for both generation and prediction tasks. To mitigate numerical instability, we replace exponential mapping with an isometric-invariant Riemannian gyrokernel approach and decouple multi-level features onto their respective task-specific manifolds to learn optimal representations. To address manifold deviation, we introduce a manifold-constrained diffusion method and a self-guided strategy for unconditional generation, ensuring that the generated data remains aligned with the manifold signature. Extensive experiments validate the effectiveness of our approach, demonstrating superior performance across a variety of tasks.