Thomas Kirchner

h-index44
2papers
9,373citations

2 Papers

1.2MED-PHFeb 22, 2021Code
Quantitative photoacoustic oximetry imaging by multiple illumination learned spectral decoloring

Thomas Kirchner, Martin Frenz

Significance: Quantitative measurement of blood oxygen saturation (sO$_2$) with photoacoustic (PA) imaging is one of the most sought after goals of quantitative PA imaging research due to its wide range of biomedical applications. Aim: A method for accurate and applicable real-time quantification of local sO$_2$ with PA imaging. Approach: We combine multiple illumination (MI) sensing with learned spectral decoloring (LSD); training on Monte Carlo simulations of spectrally colored absorbed energy spectra, in order to apply the trained models to real PA measurements. We validate our combined MI-LSD method on a highly reliable, reproducible and easily scalable phantom model, based on copper and nickel sulfate solutions. Results: With this sulfate model we see a consistently high estimation accuracy using MI-LSD, with median absolute estimation errors of 2.5 to 4.5 percentage points. We further find fewer outliers in MI-LSD estimates compared to LSD. Random forest regressors outperform previously reported neural network approaches. Conclusions: Random forest based MI-LSD is a promising method for accurate quantitative PA oximetry imaging.

3.3MED-PHNov 10, 2020
Invertible Neural Networks for Uncertainty Quantification in Photoacoustic Imaging

Jan-Hinrich Nölke, Tim Adler, Janek Gröhl et al.

Multispectral photoacoustic imaging (PAI) is an emerging imaging modality which enables the recovery of functional tissue parameters such as blood oxygenation. However, the underlying inverse problems are potentially ill-posed, meaning that radically different tissue properties may - in theory - yield comparable measurements. In this work, we present a new approach for handling this specific type of uncertainty by leveraging the concept of conditional invertible neural networks (cINNs). Specifically, we propose going beyond commonly used point estimates for tissue oxygenation and converting single-pixel initial pressure spectra to the full posterior probability density. This way, the inherent ambiguity of a problem can be encoded with multiple modes in the output. Based on the presented architecture, we demonstrate two use cases which leverage this information to not only detect and quantify but also to compensate for uncertainties: (1) photoacoustic device design and (2) optimization of photoacoustic image acquisition. Our in silico studies demonstrate the potential of the proposed methodology to become an important building block for uncertainty-aware reconstruction of physiological parameters with PAI.