Dong Li

Samuel Stevens, Jiaman Wu, Matthew J Thompson et al. · microsoft-research

Images of the natural world, collected by a variety of cameras, from drones to individual phones, are increasingly abundant sources of biological information. There is an explosion of computational methods and tools, particularly computer vision, for extracting biologically relevant information from images for science and conservation. Yet most of these are bespoke approaches designed for a specific task and are not easily adaptable or extendable to new questions, contexts, and datasets. A vision model for general organismal biology questions on images is of timely need. To approach this, we curate and release TreeOfLife-10M, the largest and most diverse ML-ready dataset of biology images. We then develop BioCLIP, a foundation model for the tree of life, leveraging the unique properties of biology captured by TreeOfLife-10M, namely the abundance and variety of images of plants, animals, and fungi, together with the availability of rich structured biological knowledge. We rigorously benchmark our approach on diverse fine-grained biology classification tasks and find that BioCLIP consistently and substantially outperforms existing baselines (by 16% to 17% absolute). Intrinsic evaluation reveals that BioCLIP has learned a hierarchical representation conforming to the tree of life, shedding light on its strong generalizability. https://imageomics.github.io/bioclip has models, data and code.

Yixing Xu, Chao Li, Xuanwu Yin et al.

Low-rank adaptation (LoRA) is one of the most popular methods among parameter-efficient fine-tuning (PEFT) methods to adapt pre-trained large language models (LLMs) to specific downstream tasks. However, the model trained based on LoRA often has an unsatisfactory performance due to its low-rank assumption. In this paper, we propose a novel method called Dual LoRA to improve the performance by incorporating an inductive bias into the original LoRA. Specifically, we separate low-rank matrices into two groups: the magnitude group to control whether or not and how far we should update a parameter and the direction group to decide whether this parameter should move forward or backward, to better simulate the parameter updating process of the full fine-tuning based on gradient-based optimization algorithms. We show that this can be simply achieved by adding a ReLU function to the magnitude group and a sign function to the direction group. We conduct several experiments over a wide range of NLP tasks, including natural language generation (NLG), understanding (NLU), and commonsense reasoning datasets on GPT-2, RoBERTa, DeBERTa, and LLaMA-1/2/3 as baseline models. The results show that we consistently outperform LoRA and its state-of-the-art variants with the same number of trainable parameters.

Amur Ghose, Vincent Zhang, Yingxue Zhang et al.

Presently with technology node scaling, an accurate prediction model at early design stages can significantly reduce the design cycle. Especially during logic synthesis, predicting cell congestion due to improper logic combination can reduce the burden of subsequent physical implementations. There have been attempts using Graph Neural Network (GNN) techniques to tackle congestion prediction during the logic synthesis stage. However, they require informative cell features to achieve reasonable performance since the core idea of GNNs is built on the message passing framework, which would be impractical at the early logic synthesis stage. To address this limitation, we propose a framework that can directly learn embeddings for the given netlist to enhance the quality of our node features. Popular random-walk based embedding methods such as Node2vec, LINE, and DeepWalk suffer from the issue of cross-graph alignment and poor generalization to unseen netlist graphs, yielding inferior performance and costing significant runtime. In our framework, we introduce a superior alternative to obtain node embeddings that can generalize across netlist graphs using matrix factorization methods. We propose an efficient mini-batch training method at the sub-graph level that can guarantee parallel training and satisfy the memory restriction for large-scale netlists. We present results utilizing open-source EDA tools such as DREAMPLACE and OPENROAD frameworks on a variety of openly available circuits. By combining the learned embedding on top of the netlist with the GNNs, our method improves prediction performance, generalizes to new circuit lines, and is efficient in training, potentially saving over $90 \%$ of runtime.

Dong Li, Xujiang Zhao, Linlin Yu et al.

Large Language Models (LLMs) offer promising capabilities for tackling complex reasoning tasks, including optimization problems. However, existing methods either rely on prompt engineering, which leads to poor generalization across problem types, or require costly supervised training. We introduce SolverLLM, a training-free framework that leverages test-time scaling to solve diverse optimization problems. Rather than solving directly, SolverLLM generates mathematical formulations and translates them into solver-ready code, guided by a novel Monte Carlo Tree Search (MCTS) strategy. To enhance the search process, we modify classical MCTS with (1) dynamic expansion for adaptive formulation generation, (2) prompt backpropagation to guide exploration via outcome-driven feedback, and (3) uncertainty backpropagation to incorporate reward reliability into decision-making. Experiments on six standard benchmark datasets demonstrate that SolverLLM outperforms both prompt-based and learning-based baselines, achieving strong generalization without additional training.

Cong Wang, Jiahong Chen, Renjie Yang et al.

An integrated data analysis model based on Gaussian Process Regression is proposed for plasma electron density profile tomography in the HL-3 tokamak. The model combines line-integral measurements from the far-infrared laser interferometer with point measurements obtained via the frequency-modulated continuous wave reflectometry. By employing Gaussian Process Regression, the model effectively incorporates point measurements into 2D profile reconstructions, while coordinate mapping integrates magnetic equilibrium information. The average relative error of the reconstructed profile obtained by the integrated data analysis model with normalized magnetic flux is as low as 3.60*10^(-4). Additionally, sensitivity tests were conducted on the grid resolution, the standard deviation of diagnostic data, and noise levels, providing a robust foundation for the real application to experimental data.

Yuxin Fang, Li Dong, Hangbo Bao et al.

We introduce Corrupted Image Modeling (CIM) for self-supervised visual pre-training. CIM uses an auxiliary generator with a small trainable BEiT to corrupt the input image instead of using artificial [MASK] tokens, where some patches are randomly selected and replaced with plausible alternatives sampled from the BEiT output distribution. Given this corrupted image, an enhancer network learns to either recover all the original image pixels, or predict whether each visual token is replaced by a generator sample or not. The generator and the enhancer are simultaneously trained and synergistically updated. After pre-training, the enhancer can be used as a high-capacity visual encoder for downstream tasks. CIM is a general and flexible visual pre-training framework that is suitable for various network architectures. For the first time, CIM demonstrates that both ViT and CNN can learn rich visual representations using a unified, non-Siamese framework. Experimental results show that our approach achieves compelling results in vision benchmarks, such as ImageNet classification and ADE20K semantic segmentation.