NEREL-BIO: A Dataset of Biomedical Abstracts Annotated with Nested Named EntitiesNatalia Loukachevitch, Suresh Manandhar, Elina Baral et al.
This paper describes NEREL-BIO -- an annotation scheme and corpus of PubMed abstracts in Russian and smaller number of abstracts in English. NEREL-BIO extends the general domain dataset NEREL by introducing domain-specific entity types. NEREL-BIO annotation scheme covers both general and biomedical domains making it suitable for domain transfer experiments. NEREL-BIO provides annotation for nested named entities as an extension of the scheme employed for NEREL. Nested named entities may cross entity boundaries to connect to shorter entities nested within longer entities, making them harder to detect. NEREL-BIO contains annotations for 700+ Russian and 100+ English abstracts. All English PubMed annotations have corresponding Russian counterparts. Thus, NEREL-BIO comprises the following specific features: annotation of nested named entities, it can be used as a benchmark for cross-domain (NEREL -> NEREL-BIO) and cross-language (English -> Russian) transfer. We experiment with both transformer-based sequence models and machine reading comprehension (MRC) models and report their results. The dataset is freely available at https://github.com/nerel-ds/NEREL-BIO.
NEREL: A Russian Dataset with Nested Named Entities, Relations and EventsNatalia Loukachevitch, Ekaterina Artemova, Tatiana Batura et al.
In this paper, we present NEREL, a Russian dataset for named entity recognition and relation extraction. NEREL is significantly larger than existing Russian datasets: to date it contains 56K annotated named entities and 39K annotated relations. Its important difference from previous datasets is annotation of nested named entities, as well as relations within nested entities and at the discourse level. NEREL can facilitate development of novel models that can extract relations between nested named entities, as well as relations on both sentence and document levels. NEREL also contains the annotation of events involving named entities and their roles in the events. The NEREL collection is available via https://github.com/nerel-ds/NEREL.
Cross-modal Contrastive Learning with Asymmetric Co-attention Network for Video Moment RetrievalLove Panta, Prashant Shrestha, Brabeem Sapkota et al.
Video moment retrieval is a challenging task requiring fine-grained interactions between video and text modalities. Recent work in image-text pretraining has demonstrated that most existing pretrained models suffer from information asymmetry due to the difference in length between visual and textual sequences. We question whether the same problem also exists in the video-text domain with an auxiliary need to preserve both spatial and temporal information. Thus, we evaluate a recently proposed solution involving the addition of an asymmetric co-attention network for video grounding tasks. Additionally, we incorporate momentum contrastive loss for robust, discriminative representation learning in both modalities. We note that the integration of these supplementary modules yields better performance compared to state-of-the-art models on the TACoS dataset and comparable results on ActivityNet Captions, all while utilizing significantly fewer parameters with respect to baseline.
2.4AIJul 1, 2021
Visualising Argumentation Graphs with Graph Embeddings and t-SNELars Malmqvist, Tommy Yuan, Suresh Manandhar
This paper applies t-SNE, a visualisation technique familiar from Deep Neural Network research to argumentation graphs by applying it to the output of graph embeddings generated using several different methods. It shows that such a visualisation approach can work for argumentation and show interesting structural properties of argumentation graphs, opening up paths for further research in the area.
15.7CVFeb 8, 2019
FocusNet: An attention-based Fully Convolutional Network for Medical Image SegmentationChaitanya Kaul, Suresh Manandhar, Nick Pears
We propose a novel technique to incorporate attention within convolutional neural networks using feature maps generated by a separate convolutional autoencoder. Our attention architecture is well suited for incorporation with deep convolutional networks. We evaluate our model on benchmark segmentation datasets in skin cancer segmentation and lung lesion segmentation. Results show highly competitive performance when compared with U-Net and it's residual variant.
7.1LGNov 29, 2018
Evaluation of Complex-Valued Neural Networks on Real-Valued Classification TasksNils Mönning, Suresh Manandhar
Complex-valued neural networks are not a new concept, however, the use of real-valued models has often been favoured over complex-valued models due to difficulties in training and performance. When comparing real-valued versus complex-valued neural networks, existing literature often ignores the number of parameters, resulting in comparisons of neural networks with vastly different sizes. We find that when real and complex neural networks of similar capacity are compared, complex models perform equal to or slightly worse than real-valued models for a range of real-valued classification tasks. The use of complex numbers allows neural networks to handle noise on the complex plane. When classifying real-valued data with a complex-valued neural network, the imaginary parts of the weights follow their real parts. This behaviour is indicative for a task that does not require a complex-valued model. We further investigated this in a synthetic classification task. We can transfer many activation functions from the real to the complex domain using different strategies. The weight initialisation of complex neural networks, however, remains a significant problem.