Maxime Moreaud

Louis Berthier, Ahmed Shokry, Maxime Moreaud et al.

This paper introduces torchsom, an open-source Python library that provides a reference implementation of the Self-Organizing Map (SOM) in PyTorch. This package offers three main features: (i) dimensionality reduction, (ii) clustering, and (iii) friendly data visualization. It relies on a PyTorch backend, enabling (i) fast and efficient training of SOMs through GPU acceleration, and (ii) easy and scalable integrations with PyTorch ecosystem. Moreover, torchsom follows the scikit-learn API for ease of use and extensibility. The library is released under the Apache 2.0 license with 90% test coverage, and its source code and documentation are available at https://github.com/michelin/TorchSOM.

Camille Couprie, Laurent Duval, Maxime Moreaud et al.

Comprehensive Two dimensional gas chromatography (GCxGC) plays a central role into the elucidation of complex samples. The automation of the identification of peak areas is of prime interest to obtain a fast and repeatable analysis of chromatograms. To determine the concentration of compounds or pseudo-compounds, templates of blobs are defined and superimposed on a reference chromatogram. The templates then need to be modified when different chromatograms are recorded. In this study, we present a chromatogram and template alignment method based on peak registration called BARCHAN. Peaks are identified using a robust mathematical morphology tool. The alignment is performed by a probabilistic estimation of a rigid transformation along the first dimension, and a non-rigid transformation in the second dimension, taking into account noise, outliers and missing peaks in a fully automated way. Resulting aligned chromatograms and masks are presented on two datasets. The proposed algorithm proves to be fast and reliable. It significantly reduces the time to results for GCxGC analysis.