Vasudha Sharma

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2papers

2 Papers

53.0DLMay 10
The Biosecurity Blind Spot: Systematic Dual-use Detection in Open Science Infrastructure

Vasudha Sharma, Chakresh Kumar Singh, Jayesh Choudhari et al.

AI is transforming life sciences research at unprecedented speed, accelerating discovery across protein structure prediction, genome modeling, and drug development (Jumper et al., 2021; Mak et al., 2024). Yet this rapid advancement, coupled with the open science movement, introduces significant dual-use research concerns that have received limited empirical scrutiny. Here we present the first systematic analysis of dual-use research of concern (DURC) content on open preprint servers. We screened ~52,000 bioRxiv preprints (2024-2025) using a hybrid pipeline of lexical filtering and large language model (LLM) evaluation, scoring metadata across nine DURC, three PEPP, and five governance categories aligned with U.S. and Australia Group oversight frameworks. Our analysis reveals that dual-use-adjacent knowledge is routinely present in openly accessible titles and abstracts, often exceeding established risk thresholds even in studies with legitimate public health objectives. While this mapping captures surface-level information diffusion, it does not measure operational capability, downstream misuse potential, or the substantial technical and biosafety barriers that constrain harmful application. We argue that institutional review processes, funding requirements, and preprint platform policies must evolve to incorporate proactive, metadata-level monitoring without compromising scientific transparency. Ultimately, harmonizing controlled-access mechanisms for high-risk methodologies with open summaries of scientific contributions offers a pragmatic framework for governing AI-accelerated biology at scale.

LGOct 13, 2025
Knowledge-Guided Machine Learning Models to Upscale Evapotranspiration in the U.S. Midwest

Aleksei Rozanov, Samikshya Subedi, Vasudha Sharma et al.

Evapotranspiration (ET) plays a critical role in the land-atmosphere interactions, yet its accurate quantification across various spatiotemporal scales remains a challenge. In situ measurement approaches, like eddy covariance (EC) or weather station-based ET estimation, allow for measuring ET at a single location. Agricultural uses of ET require estimates for each field over broad areas, making it infeasible to deploy sensing systems at each location. This study integrates tree-based and knowledge-guided machine learning (ML) techniques with multispectral remote sensing data, griddled meteorology and EC data to upscale ET across the Midwest United States. We compare four tree-based models - Random Forest, CatBoost, XGBoost, LightGBM - and a simple feed-forward artificial neural network in combination with features engineered using knowledge-guided ML principles. Models were trained and tested on EC towers located in the Midwest of the United States using k-fold cross validation with k=5 and site-year, biome stratified train-test split to avoid data leakage. Results show that LightGBM with knowledge-guided features outperformed other methods with an R2=0.86, MSE=14.99 W m^-2 and MAE = 8.82 W m^-2 according to grouped k-fold validation (k=5). Feature importance analysis shows that knowledge-guided features were most important for predicting evapotranspiration. Using the best performing model, we provide a data product at 500 m spatial and one-day temporal resolution for gridded ET for the period of 2019-2024. Intercomparison between the new gridded product and state-level weather station-based ET estimates show best-in-class correspondence.