Philippe Thomas

Lisa Raithel, Philippe Thomas, Roland Roller et al.

In this work, we present the first corpus for German Adverse Drug Reaction (ADR) detection in patient-generated content. The data consists of 4,169 binary annotated documents from a German patient forum, where users talk about health issues and get advice from medical doctors. As is common in social media data in this domain, the class labels of the corpus are very imbalanced. This and a high topic imbalance make it a very challenging dataset, since often, the same symptom can have several causes and is not always related to a medication intake. We aim to encourage further multi-lingual efforts in the domain of ADR detection and provide preliminary experiments for binary classification using different methods of zero- and few-shot learning based on a multi-lingual model. When fine-tuning XLM-RoBERTa first on English patient forum data and then on the new German data, we achieve an F1-score of 37.52 for the positive class. We make the dataset and models publicly available for the community.

Johannes Kirschnick, Philippe Thomas, Roland Roller et al.

Recent years showed a strong increase in biomedical sciences and an inherent increase in publication volume. Extraction of specific information from these sources requires highly sophisticated text mining and information extraction tools. However, the integration of freely available tools into customized workflows is often cumbersome and difficult. We describe SIA (Scalable Interoperable Annotation Server), our contribution to the BeCalm-Technical interoperability and performance of annotation servers (BeCalm-TIPS) task, a scalable, extensible, and robust annotation service. The system currently covers six named entity types (i.e., Chemicals, Diseases, Genes, miRNA, Mutations, and Organisms) and is freely available under Apache 2.0 license at https://github.com/Erechtheus/sia.

Lisa Raithel, Hui-Syuan Yeh, Shuntaro Yada et al.

User-generated data sources have gained significance in uncovering Adverse Drug Reactions (ADRs), with an increasing number of discussions occurring in the digital world. However, the existing clinical corpora predominantly revolve around scientific articles in English. This work presents a multilingual corpus of texts concerning ADRs gathered from diverse sources, including patient fora, social media, and clinical reports in German, French, and Japanese. Our corpus contains annotations covering 12 entity types, four attribute types, and 13 relation types. It contributes to the development of real-world multilingual language models for healthcare. We provide statistics to highlight certain challenges associated with the corpus and conduct preliminary experiments resulting in strong baselines for extracting entities and relations between these entities, both within and across languages.

Leonhard Hennig, Philippe Thomas, Sebastian Möller

Relation extraction (RE) is a fundamental task in information extraction, whose extension to multilingual settings has been hindered by the lack of supervised resources comparable in size to large English datasets such as TACRED (Zhang et al., 2017). To address this gap, we introduce the MultiTACRED dataset, covering 12 typologically diverse languages from 9 language families, which is created by machine-translating TACRED instances and automatically projecting their entity annotations. We analyze translation and annotation projection quality, identify error categories, and experimentally evaluate fine-tuned pretrained mono- and multilingual language models in common transfer learning scenarios. Our analyses show that machine translation is a viable strategy to transfer RE instances, with native speakers judging more than 83% of the translated instances to be linguistically and semantically acceptable. We find monolingual RE model performance to be comparable to the English original for many of the target languages, and that multilingual models trained on a combination of English and target language data can outperform their monolingual counterparts. However, we also observe a variety of translation and annotation projection errors, both due to the MT systems and linguistic features of the target languages, such as pronoun-dropping, compounding and inflection, that degrade dataset quality and RE model performance.

Martin Schiersch, Veselina Mironova, Maximilian Schmitt et al.

Monitoring mobility- and industry-relevant events is important in areas such as personal travel planning and supply chain management, but extracting events pertaining to specific companies, transit routes and locations from heterogeneous, high-volume text streams remains a significant challenge. This work describes a corpus of German-language documents which has been annotated with fine-grained geo-entities, such as streets, stops and routes, as well as standard named entity types. It has also been annotated with a set of 15 traffic- and industry-related n-ary relations and events, such as accidents, traffic jams, acquisitions, and strikes. The corpus consists of newswire texts, Twitter messages, and traffic reports from radio stations, police and railway companies. It allows for training and evaluating both named entity recognition algorithms that aim for fine-grained typing of geo-entities, as well as n-ary relation extraction systems.

Philippe Thomas, Hind Bril El Haouzi, Marie-Christine Suhner et al.

In recent times, the manufacturing processes are faced with many external or internal (the increase of customized product rescheduling , process reliability,..) changes. Therefore, monitoring and quality management activities for these manufacturing processes are difficult. Thus, the managers need more proactive approaches to deal with this variability. In this study, a proactive quality monitoring and control approach based on classifiers to predict defect occurrences and provide optimal values for factors critical to the quality processes is proposed. In a previous work (Noyel et al. 2013), the classification approach had been used in order to improve the quality of a lacquering process at a company plant; the results obtained are promising, but the accuracy of the classification model used needs to be improved. One way to achieve this is to construct a committee of classifiers (referred to as an ensemble) to obtain a better predictive model than its constituent models. However, the selection of the best classification methods and the construction of the final ensemble still poses a challenging issue. In this study, we focus and analyze the impact of the choice of classifier types on the accuracy of the classifier ensemble; in addition, we explore the effects of the selection criterion and fusion process on the ensemble accuracy as well. Several fusion scenarios were tested and compared based on a real-world case. Our results show that using an ensemble classification leads to an increase in the accuracy of the classifier models. Consequently, the monitoring and control of the considered real-world case can be improved.

Philippe Thomas

This paper presents the results of our participation in the Clickbait Detection Challenge 2017. The system relies on a fusion of neural networks, incorporating different types of available informations. It does not require any linguistic preprocessing, and hence generalizes more easily to new domains and languages. The final combined model achieves a mean squared error of 0.0428, an accuracy of 0.826, and a F1 score of 0.564. According to the official evaluation metric the system ranked 6th of the 13 participating teams.

Cyrine Selma, Hind Haouzi, Philippe Thomas et al.

In the Canadian's lumber industry, simulators are used to predict the lumbers resulting from the sawing of a log at a given sawmill. Giving a log or several logs' 3D scans as input, simulators perform a real-time job to predict the lumbers. These simulators, however, tend to be slow at processing large volume of wood. We thus explore an alternative approximation techniques based on the Iterative Closest Point (ICP) algorithm to identify the already processed log to which an unseen log resembles the most. The main benefit of the ICP approach is that it can easily handle 3D scans with a variable number of points. We compare this ICP-based nearest neighbor predictor, to predictors built using machine learning algorithms such as the K-nearest-neighbor (kNN) and Random Forest (RF). The implemented ICP-based predictor enabled us to identify key points in using the 3D scans directly for distance calculation. The long-term goal of this ongoing research is to integrated ICP distance calculations and machine learning.

Emmanuel Zimmermann, Hind Haouzi, Philippe Thomas et al.

The purpose of this study is to investigate an approach to group lots in batches and to schedule these batches on Acta-Mobilier cutting work-center while taking into account numerous constraints and objectives. The specific batching method was proposed to handle the Acta-Mobilier problem and a mathematical formalisation and genetic algorithm were proposed to deal with the scheduling problem. The proposed algorithm has been embedded in software to optimise production costs and emphasis the visual management on the production line. The application is currently being used in Acta-Mobilier plant and shows significant results

Mélanie Noyel, Philippe Thomas, Patrick Charpentier et al.

Product quality level is become a key factor for companies' competitiveness. A lot of time and money are required to ensure and guaranty it. Besides, motivated by the need of traceability, collecting production data is now commonplace in most companies. Our paper aims to show that we can ensure the required quality thanks to an "on-line quality approch" and proposes a neural network based process to determine the optimal setting for production machines. We will illustrate this with the Acta-Mobilier case, which is a high quality lacquerer company.