Junaed Younus Khan

Minaoar Hossain Tanzil, Junaed Younus Khan, Gias Uddin

We conducted a survey of 135 software engineering (SE) practitioners to understand how they use Generative AI-based chatbots like ChatGPT for SE tasks. We find that they want to use ChatGPT for SE tasks like software library selection but often worry about the truthfulness of ChatGPT responses. We developed a suite of techniques and a tool called CID (ChatGPT Incorrectness Detector) to automatically test and detect the incorrectness in ChatGPT responses. CID is based on the iterative prompting to ChatGPT by asking it contextually similar but textually divergent questions (using an approach that utilizes metamorphic relationships in texts). The underlying principle in CID is that for a given question, a response that is different from other responses (across multiple incarnations of the question) is likely an incorrect response. In a benchmark study of library selection, we show that CID can detect incorrect responses from ChatGPT with an F1-score of 0.74 - 0.75.

chengran Yang, Bowen Xu, Junaed younus Khan et al.

APIs (Application Programming Interfaces) are reusable software libraries and are building blocks for modern rapid software development. Previous research shows that programmers frequently share and search for reviews of APIs on the mainstream software question and answer (Q&A) platforms like Stack Overflow, which motivates researchers to design tasks and approaches related to process API reviews automatically. Among these tasks, classifying API reviews into different aspects (e.g., performance or security), which is called the aspect-based API review classification, is of great importance. The current state-of-the-art (SOTA) solution to this task is based on the traditional machine learning algorithm. Inspired by the great success achieved by pre-trained models on many software engineering tasks, this study fine-tunes six pre-trained models for the aspect-based API review classification task and compares them with the current SOTA solution on an API review benchmark collected by Uddin et al. The investigated models include four models (BERT, RoBERTa, ALBERT and XLNet) that are pre-trained on natural languages, BERTOverflow that is pre-trained on text corpus extracted from posts on Stack Overflow, and CosSensBERT that is designed for handling imbalanced data. The results show that all the six fine-tuned models outperform the traditional machine learning-based tool. More specifically, the improvement on the F1-score ranges from 21.0% to 30.2%. We also find that BERTOverflow, a model pre-trained on the corpus from Stack Overflow, does not show better performance than BERT. The result also suggests that CosSensBERT also does not exhibit better performance than BERT in terms of F1, but it is still worthy of being considered as it achieves better performance on MCC and AUC.

Junaed Younus Khan, Gias Uddin

Technical debt (TD) is a metaphor for code-related problems that arise as a result of prioritizing speedy delivery over perfect code. Given that the reduction of TDs can have long-term positive impact in the software engineering life-cycle (SDLC), TDs are studied extensively in the literature. However, very few of the existing research focused on the technical debts of R programming language despite its popularity and usage. Recent research by Codabux et al. [21] finds that R packages can have 10 diverse TD types analyzing peer-review documentation. However, the findings are based on the manual analysis of a small sample of R package review comments. In this paper, we develop a suite of Machine Learning (ML) classifiers to detect the 10 TDs automatically. The best performing classifier is based on the deep ML model BERT, which achieves F1-scores of 0.71 - 0.91. We then apply the trained BERT models on all available peer-review issue comments from two platforms, rOpenSci and BioConductor (13.5K review comments coming from a total of 1297 R packages). We conduct an empirical study on the prevalence and evolution of 10 TDs in the two R platforms. We discovered documentation debt is the most prevalent among all types of TD, and it is also expanding rapidly. We also find that R packages of generic platform (i.e. rOpenSci) are more prone to TD compared to domain-specific platform (i.e. BioConductor). Our empirical study findings can guide future improvements opportunities in R package documentation. Our ML models can be used to automatically monitor the prevalence and evolution of TDs in R package documentation.

Junaed Younus Khan, Md Abdullah Al Alamin

The World Health Organization (WHO) has recommended wearing face masks as one of the most effective measures to prevent COVID-19 transmission. In many countries, it is now mandatory to wear face masks, specially in public places. Since manual monitoring of face masks is often infeasible in the middle of the crowd, automatic detection can be beneficial. To facilitate that, we explored a number of deep learning models (i.e., VGG1, VGG19, ResNet50) for face-mask detection and evaluated them on two benchmark datasets. We also evaluated transfer learning (i.e., VGG19, ResNet50 pre-trained on ImageNet) in this context. We find that while the performances of all the models are quite good, transfer learning models achieve the best performance. Transfer learning improves the performance by 0.10\%--0.40\% with 30\% less training time. Our experiment also shows these high-performing models are not quite robust for real-world cases where the test dataset comes from a different distribution. Without any fine-tuning, the performance of these models drops by 47\% in cross-domain settings.

Junaed Younus Khan, Md. Tawkat Islam Khondaker, Gias Uddin et al.

The learning and usage of an API is supported by official documentation. Like source code, API documentation is itself a software product. Several research results show that bad design in API documentation can make the reuse of API features difficult. Indeed, similar to code smells or code antipatterns, poorly designed API documentation can also exhibit 'smells'. Such documentation smells can be described as bad documentation styles that do not necessarily produce an incorrect documentation but nevertheless make the documentation difficult to properly understand and to use. Recent research on API documentation has focused on finding content inaccuracies in API documentation and to complement API documentation with external resources (e.g., crowd-shared code examples). We are aware of no research that focused on the automatic detection of API documentation smells. This paper makes two contributions. First, we produce a catalog of five API documentation smells by consulting literature on API documentation presentation problems. We create a benchmark dataset of 1,000 API documentation units by exhaustively and manually validating the presence of the five smells in Java official API reference and instruction documentation. Second, we conduct a survey of 21 professional software developers to validate the catalog. The developers agreed that they frequently encounter all five smells in API official documentation and 95.2% of them reported that the presence of the documentation smells negatively affects their productivity. The participants wished for tool support to automatically detect and fix the smells in API official documentation. We develop a suite of rule-based, deep and shallow machine learning classifiers to automatically detect the smells. The best performing classifier BERT, a deep learning model, achieves F1-scores of 0.75 - 0.97.

Junaed Younus Khan, Md. Tawkat Islam Khondaker, Iram Tazim Hoque et al.

We are presenting COVID-19Base, a knowledgebase highlighting the biomedical entities related to COVID-19 disease based on literature mining. To develop COVID-19Base, we mine the information from publicly available scientific literature and related public resources. We considered seven topic-specific dictionaries, including human genes, human miRNAs, human lncRNAs, diseases, Protein Databank, drugs, and drug side effects, are integrated to mine all scientific evidence related to COVID-19. We have employed an automated literature mining and labeling system through a novel approach to measure the effectiveness of drugs against diseases based on natural language processing, sentiment analysis, and deep learning. To the best of our knowledge, this is the first knowledgebase dedicated to COVID-19, which integrates such large variety of related biomedical entities through literature mining. Proper investigation of the mined biomedical entities along with the identified interactions among those, reported in COVID-19Base, would help the research community to discover possible ways for the therapeutic treatment of COVID-19.

Junaed Younus Khan, Md. Tawkat Islam Khondaker, Sadia Afroz et al.

The proliferation of fake news and its propagation on social media has become a major concern due to its ability to create devastating impacts. Different machine learning approaches have been suggested to detect fake news. However, most of those focused on a specific type of news (such as political) which leads us to the question of dataset-bias of the models used. In this research, we conducted a benchmark study to assess the performance of different applicable machine learning approaches on three different datasets where we accumulated the largest and most diversified one. We explored a number of advanced pre-trained language models for fake news detection along with the traditional and deep learning ones and compared their performances from different aspects for the first time to the best of our knowledge. We find that BERT and similar pre-trained models perform the best for fake news detection, especially with very small dataset. Hence, these models are significantly better option for languages with limited electronic contents, i.e., training data. We also carried out several analysis based on the models' performance, article's topic, article's length, and discussed different lessons learned from them. We believe that this benchmark study will help the research community to explore further and news sites/blogs to select the most appropriate fake news detection method.