Tianwei Yue

Congrui Hetang, Haoru Xue, Cindy Le et al.

We propose SAM-Road, an adaptation of the Segment Anything Model (SAM) for extracting large-scale, vectorized road network graphs from satellite imagery. To predict graph geometry, we formulate it as a dense semantic segmentation task, leveraging the inherent strengths of SAM. The image encoder of SAM is fine-tuned to produce probability masks for roads and intersections, from which the graph vertices are extracted via simple non-maximum suppression. To predict graph topology, we designed a lightweight transformer-based graph neural network, which leverages the SAM image embeddings to estimate the edge existence probabilities between vertices. Our approach directly predicts the graph vertices and edges for large regions without expensive and complex post-processing heuristics, and is capable of building complete road network graphs spanning multiple square kilometers in a matter of seconds. With its simple, straightforward, and minimalist design, SAM-Road achieves comparable accuracy with the state-of-the-art method RNGDet++, while being 40 times faster on the City-scale dataset. We thus demonstrate the power of a foundational vision model when applied to a graph learning task. The code is available at https://github.com/htcr/sam_road.

Yiran Wu, Tianwei Yue, Shaokun Zhang et al.

It is a notable trend to use Large Language Models (LLMs) to tackle complex tasks, e.g., tasks that require a sequence of actions and dynamic interaction with tools and external environments. In this paper, we propose StateFlow, a novel LLM-based task-solving paradigm that conceptualizes complex task-solving processes as state machines. In StateFlow, we distinguish between "process grounding" (via state and state transitions) and "sub-task solving" (through actions within a state), enhancing control and interpretability of the task-solving procedure. A state represents the status of a running process. The transitions between states are controlled by heuristic rules or decisions made by the LLM, allowing for a dynamic and adaptive progression. Upon entering a state, a series of actions is executed, involving not only calling LLMs guided by different prompts, but also the utilization of external tools as needed. Our results show that StateFlow significantly enhances LLMs' efficiency. For instance, StateFlow achieves 13% and 28% higher success rates compared to ReAct in InterCode SQL and ALFWorld benchmark, with 5x and 3x less cost respectively. We also show that StateFlow can be combined with iterative refining methods like Reflexion to further improve performance.

Yihui He, Jianing Qian, Jianren Wang et al.

Very deep convolutional neural networks (CNNs) have been firmly established as the primary methods for many computer vision tasks. However, most state-of-the-art CNNs are large, which results in high inference latency. Recently, depth-wise separable convolution has been proposed for image recognition tasks on computationally limited platforms such as robotics and self-driving cars. Though it is much faster than its counterpart, regular convolution, accuracy is sacrificed. In this paper, we propose a novel decomposition approach based on SVD, namely depth-wise decomposition, for expanding regular convolutions into depthwise separable convolutions while maintaining high accuracy. We show our approach can be further generalized to the multi-channel and multi-layer cases, based on Generalized Singular Value Decomposition (GSVD) [59]. We conduct thorough experiments with the latest ShuffleNet V2 model [47] on both random synthesized dataset and a large-scale image recognition dataset: ImageNet [10]. Our approach outperforms channel decomposition [73] on all datasets. More importantly, our approach improves the Top-1 accuracy of ShuffleNet V2 by ~2%.

Tianwei Yue, Yuanxin Wang, Longxiang Zhang et al.

Advancements in genomic research such as high-throughput sequencing techniques have driven modern genomic studies into "big data" disciplines. This data explosion is constantly challenging conventional methods used in genomics. In parallel with the urgent demand for robust algorithms, deep learning has succeeded in a variety of fields such as vision, speech, and text processing. Yet genomics entails unique challenges to deep learning since we are expecting from deep learning a superhuman intelligence that explores beyond our knowledge to interpret the genome. A powerful deep learning model should rely on insightful utilization of task-specific knowledge. In this paper, we briefly discuss the strengths of different deep learning models from a genomic perspective so as to fit each particular task with a proper deep architecture, and remark on practical considerations of developing modern deep learning architectures for genomics. We also provide a concise review of deep learning applications in various aspects of genomic research, as well as pointing out potential opportunities and obstacles for future genomics applications.

Wenting Ye, Xiang Liu, Tianwei Yue et al.

While linear mixed model (LMM) has shown a competitive performance in correcting spurious associations raised by population stratification, family structures, and cryptic relatedness, more challenges are still to be addressed regarding the complex structure of genotypic and phenotypic data. For example, geneticists have discovered that some clusters of phenotypes are more co-expressed than others. Hence, a joint analysis that can utilize such relatedness information in a heterogeneous data set is crucial for genetic modeling. We proposed the sparse graph-structured linear mixed model (sGLMM) that can incorporate the relatedness information from traits in a dataset with confounding correction. Our method is capable of uncovering the genetic associations of a large number of phenotypes together while considering the relatedness of these phenotypes. Through extensive simulation experiments, we show that the proposed model outperforms other existing approaches and can model correlation from both population structure and shared signals. Further, we validate the effectiveness of sGLMM in the real-world genomic dataset on two different species from plants and humans. In Arabidopsis thaliana data, sGLMM behaves better than all other baseline models for 63.4% traits. We also discuss the potential causal genetic variation of Human Alzheimer's disease discovered by our model and justify some of the most important genetic loci.

Qi Lyu, Zhifeng Kong, Chao Shen et al.

The growing trend of using wearable devices for context-aware computing and pervasive sensing systems has raised its potentials for quick and reliable authentication techniques. Since personal writing habitats differ from each other, it is possible to realize user authentication through writing. This is of great significance as sensible information is easily collected by these devices. This paper presents a novel user authentication system through wrist-worn devices by analyzing the interaction behavior with users, which is both accurate and efficient for future usage. The key feature of our approach lies in using much more effective Savitzky-Golay filter and Dynamic Time Wrapping method to obtain fine-grained writing metrics for user authentication. These new metrics are relatively unique from person to person and independent of the computing platform. Analyses are conducted on the wristband-interaction data collected from 50 users with diversity in gender, age, and height. Extensive experimental results show that the proposed approach can identify users in a timely and accurate manner, with a false-negative rate of 1.78\%, false-positive rate of 6.7\%, and Area Under ROC Curve of 0.983 . Additional examination on robustness to various mimic attacks, tolerance to training data, and comparisons to further analyze the applicability.