Dongyeop Woo

Dongyeop Woo, Sungsoo Ahn

In this work, we consider the problem of training a generator from evaluations of energy functions or unnormalized densities. This is a fundamental problem in probabilistic inference, which is crucial for scientific applications such as learning the 3D coordinate distribution of a molecule. To solve this problem, we propose iterated energy-based flow matching (iEFM), the first off-policy approach to train continuous normalizing flow (CNF) models from unnormalized densities. We introduce the simulation-free energy-based flow matching objective, which trains the model to predict the Monte Carlo estimation of the marginal vector field constructed from known energy functions. Our framework is general and can be extended to variance-exploding (VE) and optimal transport (OT) conditional probability paths. We evaluate iEFM on a two-dimensional Gaussian mixture model (GMM) and an eight-dimensional four-particle double-well potential (DW-4) energy function. Our results demonstrate that iEFM outperforms existing methods, showcasing its potential for efficient and scalable probabilistic modeling in complex high-dimensional systems.

Dongyeop Woo, Marta Skreta, Seonghyun Park et al.

Diffusion and flow models have become the dominant paradigm for generative modeling on Riemannian manifolds, with successful applications in protein backbone generation and DNA sequence design. However, these methods require tens to hundreds of neural network evaluations at inference time, which can become a computational bottleneck in large-scale scientific sampling workflows. We introduce Riemannian MeanFlow~(RMF), a framework for learning flow maps directly on manifolds, enabling high-quality generations with as few as one forward pass. We derive three equivalent characterizations of the manifold average velocity (Eulerian, Lagrangian, and semigroup identities), and analyze parameterizations and stabilization techniques to improve training on high-dimensional manifolds. In promoter DNA design and protein backbone generation settings, RMF achieves comparable sample quality to prior methods while requiring up to 10$\times$ fewer function evaluations. Finally, we show that few-step flow maps enable efficient reward-guided design through reward look-ahead, where terminal states can be predicted from intermediate steps at minimal additional cost.