LGMar 21, 2024
Thinking in Groups: Permutation Tests Reveal Near-Out-of-DistributionYasith Jayawardana, Dineth Jayakody, Sampath Jayarathna et al.
Deep neural networks (DNNs) have the potential to power many biomedical workflows, but training them on truly representative, IID datasets is often infeasible. Most models instead rely on biased or incomplete data, making them prone to out-of-distribution (OoD) inputs that closely resemble in-distribution samples. Such near-OoD cases are harder to detect than standard OOD benchmarks and can cause unreliable, even catastrophic, predictions. Biomedical assays, however, offer a unique opportunity: they often generate multiple correlated measurements per specimen through biological or technical replicates. Exploiting this insight, we introduce Homogeneous OoD (HOoD), a novel OoD detection framework for correlated data. HOoD projects groups of correlated measurements through a trained model and uses permutation-based hypothesis tests to compare them with known subpopulations. Each test yields an interpretable p-value, quantifying how well a group matches a subpopulation. By aggregating these p-values, HOoD reliably identifies OoD groups. In evaluations, HOoD consistently outperforms point-wise and ensemble-based OoD detectors, demonstrating its promise for robust real-world deployment.
DLDec 7, 2020
Modeling Updates of Scholarly Webpages Using Archived DataYasith Jayawardana, Alexander C. Nwala, Gavindya Jayawardena et al.
The vastness of the web imposes a prohibitive cost on building large-scale search engines with limited resources. Crawl frontiers thus need to be optimized to improve the coverage and freshness of crawled content. In this paper, we propose an approach for modeling the dynamics of change in the web using archived copies of webpages. To evaluate its utility, we conduct a preliminary study on the scholarly web using 19,977 seed URLs of authors' homepages obtained from their Google Scholar profiles. We first obtain archived copies of these webpages from the Internet Archive (IA), and estimate when their actual updates occurred. Next, we apply maximum likelihood to estimate their mean update frequency ($λ$) values. Our evaluation shows that $λ$ values derived from a short history of archived data provide a good estimate for the true update frequency in the short-term, and that our method provides better estimations of updates at a fraction of resources compared to the baseline models. Based on this, we demonstrate the utility of archived data to optimize the crawling strategy of web crawlers, and uncover important challenges that inspire future research directions.
CVApr 16, 2020
Gaze-Net: Appearance-Based Gaze Estimation using Capsule NetworksBhanuka Mahanama, Yasith Jayawardana, Sampath Jayarathna
Recent studies on appearance based gaze estimation indicate the ability of Neural Networks to decode gaze information from facial images encompassing pose information. In this paper, we propose Gaze-Net: A capsule network capable of decoding, representing, and estimating gaze information from ocular region images. We evaluate our proposed system using two publicly available datasets, MPIIGaze (200,000+ images in the wild) and Columbia Gaze (5000+ images of users with 21 gaze directions observed at 5 camera angles/positions). Our model achieves a Mean Absolute Error (MAE) of 2.84$^\circ$ for Combined angle error estimate within dataset for MPI-IGaze dataset. Further, model achieves a MAE of 10.04$^\circ$ for across dataset gaze estimation error for Columbia gaze dataset. Through transfer learning, the error is reduced to 5.9$^\circ$. The results show this approach is promising with implications towards using commodity webcams to develop low-cost multi-user gaze tracking systems.
SPJun 26, 2019
Electroencephalogram (EEG) for Delineating Objective Measure of Autism Spectrum Disorder (ASD) (Extended Version)Yasith Jayawardana, Mark Jaime, Sashi Thapaliya et al.
Autism Spectrum Disorder (ASD) is a developmental disorder that often impairs a child's normal development of the brain. According to CDC, it is estimated that 1 in 6 children in the US suffer from development disorders, and 1 in 68 children in the US suffer from ASD. This condition has a negative impact on a person's ability to hear, socialize and communicate. Overall, ASD has a broad range of symptoms and severity; hence the term spectrum is used. One of the main contributors to ASD is known to be genetics. Up to date, no suitable cure for ASD has been found. Early diagnosis is crucial for the long-term treatment of ASD, but this is challenging due to the lack of a proper objective measures. Subjective measures often take more time, resources, and have false positives or false negatives. There is a need for efficient objective measures that can help in diagnosing this disease early as possible with less effort. EEG measures the electric signals of the brain via electrodes placed on various places on the scalp. These signals can be used to study complex neuropsychiatric issues. Studies have shown that EEG has the potential to be used as a biomarker for various neurological conditions including ASD. This chapter will outline the usage of EEG measurement for the classification of ASD using machine learning algorithms.