Dineth Jayakody

Leonidas Zimianitis, Pasindu Thenahandi, Kai Buckhalter et al.

Tracking the dynamics of non-canonical biological systems in microscopy videos remains a persistent challenge. Both classical and learning-based trackers depend on expert-reviewed data to be evaluated and adapted, yet exhaustive manual annotation rarely scales to the videos where these tools are needed most. We developed RIPPLE (Refinement Interpolation Platform for Point Location Estimation), which recasts annotation as sparse correction: a user clicks a starting point, RIPPLE proposes a full trajectory, and the user intervenes only where the trajectory drifts. We tested RIPPLE on five challenging microscopy datasets from our laboratories, four from the transparent jellyfish Clytia hemisphaerica and one tracking landmarks on rapidly moving sperm. Across these, RIPPLE matched the quality of exhaustive manual annotation while reducing manual clicks by 3 to 25 times across datasets. RIPPLE thereby fills a missing layer between manual annotation and fully automated tracking, enabling immediate quantification of biological dynamics, method benchmarking, and the production of the gold-standard data needed to adapt future automated microscopy trackers.

Dineth Jayakody, Pasindu Thenahandi, Sampath Jayarathna

Online travel platforms generate vast volumes of user-generated hotel reviews, offering rich opportunities to understand traveler experiences at scale. However, transforming unstructured textual feedback into structured, actionable insights remains a challenging task. This paper presents SentimentLens, a scalable analysis system based on Aspect-Based Sentiment Analysis that performs knowledge extraction from unstructured hotel reviews and organizes them into interpretable service categories. SentimentLens integrates aspect term extraction, aspect sentiment classification, semantic category assignment, and multi-level analytical modules to support region-level, hotel-level, and category-level evaluation. The system is designed to operate across different geographic contexts and hospitality settings. To demonstrate its practical utility, we apply SentimentLens to a large real-world dataset of over 10,000 publicly available hotel reviews. Through extensive analysis, the framework reveals how traveler sentiment varies across regions, service categories, and hotel archetypes. We further implement a cross-modal reconciliation of textual sentiment and numerical ratings to identify latent operational conflicts, structural inconsistencies in service quality, and high-impact improvement opportunities using importance--performance and entropy-based analyses. The results show that SentimentLens effectively transforms large-scale unstructured reviews into actionable intelligence, supporting data-driven decision-making for hospitality management and tourism policy. While demonstrated using a national case study, the proposed system is generalizable to other destinations and review-driven service domains.

Dineth Jayakody, Koshila Isuranda, A V A Malkith et al.

Since the dawn of the digitalisation era, customer feedback and online reviews are unequivocally major sources of insights for businesses. Consequently, conducting comparative analyses of such sources has become the de facto modus operandi of any business that wishes to give itself a competitive edge over its peers and improve customer loyalty. Sentiment analysis is one such method instrumental in gauging public interest, exposing market trends, and analysing competitors. While traditional sentiment analysis focuses on overall sentiment, as the needs advance with time, it has become important to explore public opinions and sentiments on various specific subjects, products and services mentioned in the reviews on a finer-granular level. To this end, Aspect-based Sentiment Analysis (ABSA), supported by advances in Artificial Intelligence (AI) techniques which have contributed to a paradigm shift from simple word-level analysis to tone and context-aware analyses, focuses on identifying specific aspects within the text and determining the sentiment associated with each aspect. In this study, we compare several deep-NN methods for ABSA on two benchmark datasets (Restaurant14 and Laptop-14) and found that FAST LSA obtains the best overall results of 87.6% and 82.6% accuracy but does not pass LSA+DeBERTa which reports 90.33% and 86.21% accuracy respectively.

Dineth Jayakody, A V A Malkith, Koshila Isuranda et al.

Aspect-based Sentiment Analysis (ABSA) is a critical task in Natural Language Processing (NLP) that focuses on extracting sentiments related to specific aspects within a text, offering deep insights into customer opinions. Traditional sentiment analysis methods, while useful for determining overall sentiment, often miss the implicit opinions about particular product or service features. This paper presents a comprehensive review of the evolution of ABSA methodologies, from lexicon-based approaches to machine learning and deep learning techniques. We emphasize the recent advancements in Transformer-based models, particularly Bidirectional Encoder Representations from Transformers (BERT) and its variants, which have set new benchmarks in ABSA tasks. We focused on finetuning Llama and Mistral models, building hybrid models using the SetFit framework, and developing our own model by exploiting the strengths of state-of-the-art (SOTA) Transformer-based models for aspect term extraction (ATE) and aspect sentiment classification (ASC). Our hybrid model Instruct - DeBERTa uses SOTA InstructABSA for aspect extraction and DeBERTa-V3-baseabsa-V1 for aspect sentiment classification. We utilize datasets from different domains to evaluate our model's performance. Our experiments indicate that the proposed hybrid model significantly improves the accuracy and reliability of sentiment analysis across all experimented domains. As per our findings, our hybrid model Instruct - DeBERTa is the best-performing model for the joint task of ATE and ASC for both SemEval restaurant 2014 and SemEval laptop 2014 datasets separately. By addressing the limitations of existing methodologies, our approach provides a robust solution for understanding detailed consumer feedback, thus offering valuable insights for businesses aiming to enhance customer satisfaction and product development.

Dineth Jayakody, Pasindu Thenahandi, Chameli Dommanige

Pneumonia remains a leading global cause of morbidity and mortality, particularly in low resource settings where access to imaging, laboratory testing, and specialist care is limited. Clinical assessment relies on heterogeneous evidence, including symptoms, respiratory patterns, and chest imaging, making screening inherently multimodal. However, many existing computational approaches remain unimodal and focus primarily on radiographs. In this work, we present MultiSense-Pneumo, a multimodal framework for pneumonia oriented screening and triage support that integrates structured symptom descriptors, cough audio, spoken language, and chest radiographs. The system combines deterministic symptom triage, LightGBM based acoustic classification, domain adversarial radiograph analysis using ResNet 18, transformer based speech recognition, and an interpretable multimodal fusion operator. Each modality is transformed into a normalized risk signal and aggregated into a unified screening estimate, enabling transparent and modular decision support. MultiSense-Pneumo is designed for real world deployment under modest computational constraints and can operate fully offline on standard laptop class hardware, making it suitable for community health workers, rural clinics, and emergency response settings. Experimental results demonstrate robustness of the radiograph pathway under domain shifts, while highlighting limitations in minority class recall for acoustic signals. MultiSense-Pneumo is intended as a research prototype for screening and triage support rather than a clinically validated diagnostic system.

Yasith Jayawardana, Dineth Jayakody, Sampath Jayarathna et al.

Deep neural networks (DNNs) have the potential to power many biomedical workflows, but training them on truly representative, IID datasets is often infeasible. Most models instead rely on biased or incomplete data, making them prone to out-of-distribution (OoD) inputs that closely resemble in-distribution samples. Such near-OoD cases are harder to detect than standard OOD benchmarks and can cause unreliable, even catastrophic, predictions. Biomedical assays, however, offer a unique opportunity: they often generate multiple correlated measurements per specimen through biological or technical replicates. Exploiting this insight, we introduce Homogeneous OoD (HOoD), a novel OoD detection framework for correlated data. HOoD projects groups of correlated measurements through a trained model and uses permutation-based hypothesis tests to compare them with known subpopulations. Each test yields an interpretable p-value, quantifying how well a group matches a subpopulation. By aggregating these p-values, HOoD reliably identifies OoD groups. In evaluations, HOoD consistently outperforms point-wise and ensemble-based OoD detectors, demonstrating its promise for robust real-world deployment.