Xiaoxue Han

Xiaoxue Han, Libo Zhang, Zining Zhu et al. · utoronto

We introduce Graph Concept Bottleneck (GCB) as a new paradigm for self-explainable text-attributed graph learning. GCB maps graphs into a subspace, concept bottleneck, where each concept is a meaningful phrase, and predictions are made based on the activation of these concepts. Unlike existing interpretable graph learning methods that primarily rely on subgraphs as explanations, the concept bottleneck provides a new form of interpretation. To refine the concept space, we apply the information bottleneck principle to focus on the most relevant concepts. This not only yields more concise and faithful explanations but also explicitly guides the model to "think" toward the correct decision. We empirically show that GCB achieves intrinsic interpretability with accuracy on par with black-box Graph Neural Networks. Moreover, it delivers better performance under distribution shifts and data perturbations, showing improved robustness and generalizability, benefitting from concept-guided prediction.

Xiaoxue Han, Zhuo Feng, Yue Ning

Continual learning on graphs tackles the problem of training a graph neural network (GNN) where graph data arrive in a streaming fashion and the model tends to forget knowledge from previous tasks when updating with new data. Traditional continual learning strategies such as Experience Replay can be adapted to streaming graphs, however, these methods often face challenges such as inefficiency in preserving graph topology and incapability of capturing the correlation between old and new tasks. To address these challenges, we propose TA$\mathbb{CO}$, a (t)opology-(a)ware graph (co)arsening and (co)ntinual learning framework that stores information from previous tasks as a reduced graph. At each time period, this reduced graph expands by combining with a new graph and aligning shared nodes, and then it undergoes a "zoom out" process by reduction to maintain a stable size. We design a graph coarsening algorithm based on node representation proximities to efficiently reduce a graph and preserve topological information. We empirically demonstrate the learning process on the reduced graph can approximate that of the original graph. Our experiments validate the effectiveness of the proposed framework on three real-world datasets using different backbone GNN models.

Pengfei Hu, Xiaoxue Han, Fei Wang et al.

Healthcare providers often divide patient populations into cohorts based on shared clinical factors, such as medical history, to deliver personalized healthcare services. This idea has also been adopted in clinical prediction models, where it presents a vital challenge: capturing both global and cohort-specific patterns while enabling model generalization to unseen domains. Addressing this challenge falls under the scope of domain generalization (DG). However, conventional DG approaches often struggle in clinical settings due to the absence of explicit domain labels and the inherent gap in medical knowledge. To address this, we propose UdonCare, a hierarchy-guided method that iteratively divides patients into latent domains and decomposes domain-invariant (label) information from patient data. Our method identifies patient domains by pruning medical ontologies (e.g. ICD-9-CM hierarchy). On two public datasets, MIMIC-III and MIMIC-IV, UdonCare shows superiority over eight baselines across four clinical prediction tasks with substantial domain gaps, highlighting the untapped potential of medical knowledge in guiding clinical domain generalization problems.

Eric Yang, Pengfei Hu, Xiaoxue Han et al.

The adoption of digital systems in healthcare has resulted in the accumulation of vast electronic health records (EHRs), offering valuable data for machine learning methods to predict patient health outcomes. However, single-visit records of patients are often neglected in the training process due to the lack of annotations of next-visit information, thereby limiting the predictive and expressive power of machine learning models. In this paper, we present a novel framework MPLite that utilizes Multi-aspect Pretraining with Lab results through a light-weight neural network to enhance medical concept representation and predict future health outcomes of individuals. By incorporating both structured medical data and additional information from lab results, our approach fully leverages patient admission records. We design a pretraining module that predicts medical codes based on lab results, ensuring robust prediction by fusing multiple aspects of features. Our experimental evaluation using both MIMIC-III and MIMIC-IV datasets demonstrates improvements over existing models in diagnosis prediction and heart failure prediction tasks, achieving a higher weighted-F1 and recall with MPLite. This work reveals the potential of integrating diverse aspects of data to advance predictive modeling in healthcare.