Ting-Yu Lin

Rui-Yang Ju, Ting-Yu Lin, Jia-Hao Jian et al.

With the good performance of deep learning algorithms in the field of computer vision (CV), the convolutional neural network (CNN) architecture has become a main backbone of the computer vision task. With the widespread use of mobile devices, neural network models based on platforms with low computing power are gradually being paid attention. However, due to the limitation of computing power, deep learning algorithms are usually not available on mobile devices. This paper proposes a lightweight convolutional neural network, TripleNet, which can operate easily on Raspberry Pi. Adopted from the concept of block connections in ThreshNet, the newly proposed network model compresses and accelerates the network model, reduces the amount of parameters of the network, and shortens the inference time of each image while ensuring the accuracy. Our proposed TripleNet and other state-of-the-art (SOTA) neural networks perform image classification experiments with the CIFAR-10 and SVHN datasets on Raspberry Pi. The experimental results show that, compared with GhostNet, MobileNet, ThreshNet, EfficientNet, and HarDNet, the inference time of TripleNet per image is shortened by 15%, 16%, 17%, 24%, and 30%, respectively. The detail codes of this work are available at https://github.com/RuiyangJu/TripleNet.

Rui-Yang Ju, Ting-Yu Lin, Jen-Shiun Chiang et al.

With the achievements of Transformer in the field of natural language processing, the encoder-decoder and the attention mechanism in Transformer have been applied to computer vision. Recently, in multiple tasks of computer vision (image classification, object detection, semantic segmentation, etc.), state-of-the-art convolutional neural networks have introduced some concepts of Transformer. This proves that Transformer has a good prospect in the field of image recognition. After Vision Transformer was proposed, more and more works began to use self-attention to completely replace the convolutional layer. This work is based on Vision Transformer, combined with the pyramid architecture, using Split-transform-merge to propose the group encoder and name the network architecture Aggregated Pyramid Vision Transformer (APVT). We perform image classification tasks on the CIFAR-10 dataset and object detection tasks on the COCO 2017 dataset. Compared with other network architectures that use Transformer as the backbone, APVT has excellent results while reducing the computational cost. We hope this improved strategy can provide a reference for future Transformer research in computer vision.

Austin E. Y. T. Lefebvre, Gabriel Sturm, Ting-Yu Lin et al.

The analysis of dynamic organelles remains a formidable challenge, though key to understanding biological processes. We introduce Nellie, an automated and unbiased user-friendly pipeline for segmentation, tracking, and feature extraction of diverse intracellular structures. Nellie adapts to image metadata, eliminating user input. Nellie's preprocessing pipeline enhances structural contrast on multiple intracellular scales allowing for robust hierarchical segmentation of sub-organellar regions. Internal motion capture markers are generated and tracked via a radius-adaptive pattern matching scheme, and used as guides for sub-voxel flow interpolation. Nellie extracts a plethora of features at multiple hierarchical levels for deep and customizable analysis. Nellie features a point-and-click Napari-based GUI that allows for code-free operation and visualization, while its modular open-source codebase invites extension by experienced users. We demonstrate Nellie's wide variety of use cases with three examples: unmixing multiple organelles from a single channel using feature-based classification, training an unsupervised graph autoencoder on mitochondrial multi-mesh graphs to quantify latent space embedding changes following ionomycin treatment, and performing in-depth characterization and comparison of endoplasmic reticulum networks across different cell types and temporal frames.

Rui-Yang Ju, Ting-Yu Lin, Jia-Hao Jian et al.

With the continuous development of neural networks for computer vision tasks, more and more network architectures have achieved outstanding success. As one of the most advanced neural network architectures, DenseNet shortcuts all feature maps to solve the model depth problem. Although this network architecture has excellent accuracy with low parameters, it requires an excessive inference time. To solve this problem, HarDNet reduces the connections between the feature maps, making the remaining connections resemble harmonic waves. However, this compression method may result in a decrease in the model accuracy and an increase in the parameters and model size. This network architecture may reduce the memory access time, but its overall performance can still be improved. Therefore, we propose a new network architecture, ThreshNet, using a threshold mechanism to further optimize the connection method. Different numbers of connections for different convolution layers are discarded to accelerate the inference of the network. The proposed network has been evaluated with image classification using CIFAR 10 and SVHN datasets under platforms of NVIDIA RTX 3050 and Raspberry Pi 4. The experimental results show that, compared with HarDNet68, GhostNet, MobileNetV2, ShuffleNet, and EfficientNet, the inference time of the proposed ThreshNet79 is 5%, 9%, 10%, 18%, and 20% faster, respectively. The number of parameters of ThreshNet95 is 55% less than that of HarDNet85. The new model compression and model acceleration methods can speed up the inference time, enabling network models to operate on mobile devices.

Rui-Yang Ju, Ting-Yu Lin, Jen-Shiun Chiang

Deep neural networks have made significant progress in the field of computer vision. Recent studies have shown that depth, width and shortcut connections of neural network architectures play a crucial role in their performance. One of the most advanced neural network architectures, DenseNet, has achieved excellent convergence rates through dense connections. However, it still has obvious shortcomings in the usage of amount of memory. In this paper, we introduce a new type of pruning tool, threshold, which refers to the principle of the threshold voltage in MOSFET. This work employs this method to connect blocks of different depths in different ways to reduce the usage of memory. It is denoted as ThresholdNet. We evaluate ThresholdNet and other different networks on datasets of CIFAR10. Experiments show that HarDNet is twice as fast as DenseNet, and on this basis, ThresholdNet is 10% faster and 10% lower error rate than HarDNet.