Dongjin Choi

Dongjin Choi, Andy Xiang, Ozgur Ozturk et al.

In the rapidly evolving healthcare industry, platforms now have access to not only traditional medical records, but also diverse data sets encompassing various patient interactions, such as those from healthcare web portals. To address this rich diversity of data, we introduce WellFactor: a method that derives patient profiles by integrating information from these sources. Central to our approach is the utilization of constrained low-rank approximation. WellFactor is optimized to handle the sparsity that is often inherent in healthcare data. Moreover, by incorporating task-specific label information, our method refines the embedding results, offering a more informed perspective on patients. One important feature of WellFactor is its ability to compute embeddings for new, previously unobserved patient data instantaneously, eliminating the need to revisit the entire data set or recomputing the embedding. Comprehensive evaluations on real-world healthcare data demonstrate WellFactor's effectiveness. It produces better results compared to other existing methods in classification performance, yields meaningful clustering of patients, and delivers consistent results in patient similarity searches and predictions.

Dongjin Choi, Sara Evensen, Çağatay Demiralp et al.

Despite rapid developments in the field of machine learning research, collecting high-quality labels for supervised learning remains a bottleneck for many applications. This difficulty is exacerbated by the fact that state-of-the-art models for NLP tasks are becoming deeper and more complex, often increasing the amount of training data required even for fine-tuning. Weak supervision methods, including data programming, address this problem and reduce the cost of label collection by using noisy label sources for supervision. However, until recently, data programming was only accessible to users who knew how to program. To bridge this gap, the Data Programming by Demonstration framework was proposed to facilitate the automatic creation of labeling functions based on a few examples labeled by a domain expert. This framework has proven successful for generating high-accuracy labeling models for document classification. In this work, we extend the DPBD framework to span-level annotation tasks, arguably one of the most time-consuming NLP labeling tasks. We built a novel tool, TagRuler, that makes it easy for annotators to build span-level labeling functions without programming and encourages them to explore trade-offs between different labeling models and active learning strategies. We empirically demonstrated that an annotator could achieve a higher F1 score using the proposed tool compared to manual labeling for different span-level annotation tasks.

Zijie J. Wang, Dongjin Choi, Shenyu Xu et al.

How can we design Natural Language Processing (NLP) systems that learn from human feedback? There is a growing research body of Human-in-the-loop (HITL) NLP frameworks that continuously integrate human feedback to improve the model itself. HITL NLP research is nascent but multifarious -- solving various NLP problems, collecting diverse feedback from different people, and applying different methods to learn from collected feedback. We present a survey of HITL NLP work from both Machine Learning (ML) and Human-Computer Interaction (HCI) communities that highlights its short yet inspiring history, and thoroughly summarize recent frameworks focusing on their tasks, goals, human interactions, and feedback learning methods. Finally, we discuss future directions for integrating human feedback in the NLP development loop.

Sara Evensen, Chang Ge, Dongjin Choi et al.

Data programming is a programmatic weak supervision approach to efficiently curate large-scale labeled training data. Writing data programs (labeling functions) requires, however, both programming literacy and domain expertise. Many subject matter experts have neither programming proficiency nor time to effectively write data programs. Furthermore, regardless of one's expertise in coding or machine learning, transferring domain expertise into labeling functions by enumerating rules and thresholds is not only time consuming but also inherently difficult. Here we propose a new framework, data programming by demonstration (DPBD), to generate labeling rules using interactive demonstrations of users. DPBD aims to relieve the burden of writing labeling functions from users, enabling them to focus on higher-level semantics such as identifying relevant signals for labeling tasks. We operationalize our framework with Ruler, an interactive system that synthesizes labeling rules for document classification by using span-level annotations of users on document examples. We compare Ruler with conventional data programming through a user study conducted with 10 data scientists creating labeling functions for sentiment and spam classification tasks. We find that Ruler is easier to use and learn and offers higher overall satisfaction, while providing discriminative model performances comparable to ones achieved by conventional data programming.

Hannah Kim, Dongjin Choi, Barry Drake et al.

Topic modeling is commonly used to analyze and understand large document collections. However, in practice, users want to focus on specific aspects or "targets" rather than the entire corpus. For example, given a large collection of documents, users may want only a smaller subset which more closely aligns with their interests, tasks, and domains. In particular, our paper focuses on large-scale document retrieval with high recall where any missed relevant documents can be critical. A simple keyword matching search is generally not effective nor efficient as 1) it is difficult to find a list of keyword queries that can cover the documents of interest before exploring the dataset, 2) some documents may not contain the exact keywords of interest but may still be highly relevant, and 3) some words have multiple meanings, which would result in irrelevant documents included in the retrieved subset. In this paper, we present TopicSifter, a visual analytics system for interactive search space reduction. Our system utilizes targeted topic modeling based on nonnegative matrix factorization and allows users to give relevance feedback in order to refine their target and guide the topic modeling to the most relevant results.