Extracting and Encoding: Leveraging Large Language Models and Medical Knowledge to Enhance Radiological Text RepresentationPablo Messina, René Vidal, Denis Parra et al.
Advancing representation learning in specialized fields like medicine remains challenging due to the scarcity of expert annotations for text and images. To tackle this issue, we present a novel two-stage framework designed to extract high-quality factual statements from free-text radiology reports in order to improve the representations of text encoders and, consequently, their performance on various downstream tasks. In the first stage, we propose a \textit{Fact Extractor} that leverages large language models (LLMs) to identify factual statements from well-curated domain-specific datasets. In the second stage, we introduce a \textit{Fact Encoder} (CXRFE) based on a BERT model fine-tuned with objective functions designed to improve its representations using the extracted factual data. Our framework also includes a new embedding-based metric (CXRFEScore) for evaluating chest X-ray text generation systems, leveraging both stages of our approach. Extensive evaluations show that our fact extractor and encoder outperform current state-of-the-art methods in tasks such as sentence ranking, natural language inference, and label extraction from radiology reports. Additionally, our metric proves to be more robust and effective than existing metrics commonly used in the radiology report generation literature. The code of this project is available at \url{https://github.com/PabloMessina/CXR-Fact-Encoder}.
8.2SYApr 1
BLISS: Global Blind Identification of Linear Systems with Sparse InputsKyle Poe, Uday Kiran Reddy Tadipatri, Benjamin D. Haeffele et al.
Linear system identification and sparse dictionary learning can both be seen as structured matrix factorization problems. However, these two problems have historically been studied in isolation by the systems theory and machine learning communities. Although linear system identification enjoys a mature theory when inputs are known, blind linear system identification remains poorly understood beyond restrictive settings. In contrast, complete sparse dictionary learning has recently benefited from strong global identifiability results and scalable nonconvex algorithms. In this work, we bridge these two areas by showing that under a sparse input assumption, fully observed blind system identification becomes a generalization of complete dictionary learning. This connection allows us to develop global identifiability guarantees for blind system identification, by leveraging techniques from the complete dictionary learning literature. We further show empirically that a principled application of the alternating direction method of multipliers can globally recover the ground-truth system from a single trajectory, provided sufficient samples and input sparsity.
Contextual Knowledge Pursuit for Faithful Visual SynthesisJinqi Luo, Kwan Ho Ryan Chan, Dimitris Dimos et al.
Modern text-to-vision generative models often hallucinate when the prompt describing the scene to be generated is underspecified. In large language models (LLMs), a prevalent strategy to reduce hallucinations is to retrieve factual knowledge from an external database. While such retrieval augmentation strategies have great potential to enhance text-to-vision generators, existing static top-K retrieval methods explore the knowledge pool once, missing the broader context necessary for high-quality generation. Furthermore, LLMs internally possess rich world knowledge learned during large-scale training (parametric knowledge) that could mitigate the need for external data retrieval. This paper proposes Contextual Knowledge Pursuit (CKPT), a framework that leverages the complementary strengths of external and parametric knowledge to help generators produce reliable visual content. Instead of the one-time retrieval of facts from an external database to improve a given prompt, CKPT uses (1) an LLM to decide whether to seek external knowledge or to self-elicit descriptions from LLM parametric knowledge, (2) a knowledge pursuit process to contextually seek and sequentially gather most relevant facts, (3) a knowledge aggregator for prompt enhancement with the gathered fact context, and (4) a filtered fine-tuning objective to improve visual synthesis with richer prompts. We evaluate CKPT across multiple text-driven generative tasks (image, 3D rendering, and video) on datasets of rare objects and daily scenarios. Our results show that CKPT is capable of generating faithful and semantically rich content across diverse visual domains, offering a promising data source for zero-shot synthesis and filtered fine-tuning of text-to-vision generative models.
12.2OCOct 22, 2024
Guarantees of a Preconditioned Subgradient Algorithm for Overparameterized Asymmetric Low-rank Matrix RecoveryParis Giampouras, HanQin Cai, Rene Vidal
In this paper, we focus on a matrix factorization-based approach to recover low-rank {\it asymmetric} matrices from corrupted measurements. We propose an {\it Overparameterized Preconditioned Subgradient Algorithm (OPSA)} and provide, for the first time in the literature, linear convergence rates independent of the rank of the sought asymmetric matrix in the presence of gross corruptions. Our work goes beyond existing results in preconditioned-type approaches addressing their current limitation, i.e., the lack of convergence guarantees in the case of {\it asymmetric matrices of unknown rank}. By applying our approach to (robust) matrix sensing, we highlight its merits when the measurement operator satisfies a mixed-norm restricted isometry property. Lastly, we present extensive numerical experiments that validate our theoretical results and demonstrate the effectiveness of our approach for different levels of overparameterization and outlier corruptions.
Stochastic Extragradient with Random Reshuffling: Improved Convergence for Variational InequalitiesKonstantinos Emmanouilidis, René Vidal, Nicolas Loizou
The Stochastic Extragradient (SEG) method is one of the most popular algorithms for solving finite-sum min-max optimization and variational inequality problems (VIPs) appearing in various machine learning tasks. However, existing convergence analyses of SEG focus on its with-replacement variants, while practical implementations of the method randomly reshuffle components and sequentially use them. Unlike the well-studied with-replacement variants, SEG with Random Reshuffling (SEG-RR) lacks established theoretical guarantees. In this work, we provide a convergence analysis of SEG-RR for three classes of VIPs: (i) strongly monotone, (ii) affine, and (iii) monotone. We derive conditions under which SEG-RR achieves a faster convergence rate than the uniform with-replacement sampling SEG. In the monotone setting, our analysis of SEG-RR guarantees convergence to an arbitrary accuracy without large batch sizes, a strong requirement needed in the classical with-replacement SEG. As a byproduct of our results, we provide convergence guarantees for Shuffle Once SEG (shuffles the data only at the beginning of the algorithm) and the Incremental Extragradient (does not shuffle the data). We supplement our analysis with experiments validating empirically the superior performance of SEG-RR over the classical with-replacement sampling SEG.
15.7LGJul 4, 2025
Conformal Information Pursuit for Interactively Guiding Large Language ModelsKwan Ho Ryan Chan, Yuyan Ge, Edgar Dobriban et al.
A significant use case of instruction-finetuned Large Language Models (LLMs) is to solve question-answering tasks interactively. In this setting, an LLM agent is tasked with making a prediction by sequentially querying relevant information from the user, as opposed to a single-turn conversation. This paper explores sequential querying strategies that aim to minimize the expected number of queries. One such strategy is Information Pursuit (IP), a greedy algorithm that at each iteration selects the query that maximizes information gain or equivalently minimizes uncertainty. However, obtaining accurate estimates of mutual information or conditional entropy for LLMs is very difficult in practice due to over- or under-confident LLM proba- bilities, which leads to suboptimal query selection and predictive performance. To better estimate the uncertainty at each iteration, we propose Conformal Information Pursuit (C-IP), an alternative approach to sequential information gain based on conformal prediction sets. More specifically, C-IP leverages a relationship between prediction sets and conditional entropy at each iteration to estimate uncertainty based on the average size of conformal prediction sets. In contrast to conditional entropy, we find that conformal prediction sets are a distribution-free and robust method of measuring uncertainty. Experiments with 20 Questions show that C-IP obtains better predictive performance and shorter query-answer chains compared to previous approaches to IP and uncertainty-based chain-of-thought methods. Furthermore, extending to an interactive medical setting between a doctor and a patient on the MediQ dataset, C-IP achieves competitive performance with direct single-turn prediction while offering greater interpretability.
19.7CVJun 9, 2025
CXR-LT 2024: A MICCAI challenge on long-tailed, multi-label, and zero-shot disease classification from chest X-rayMingquan Lin, Gregory Holste, Song Wang et al.
The CXR-LT series is a community-driven initiative designed to enhance lung disease classification using chest X-rays (CXR). It tackles challenges in open long-tailed lung disease classification and enhances the measurability of state-of-the-art techniques. The first event, CXR-LT 2023, aimed to achieve these goals by providing high-quality benchmark CXR data for model development and conducting comprehensive evaluations to identify ongoing issues impacting lung disease classification performance. Building on the success of CXR-LT 2023, the CXR-LT 2024 expands the dataset to 377,110 chest X-rays (CXRs) and 45 disease labels, including 19 new rare disease findings. It also introduces a new focus on zero-shot learning to address limitations identified in the previous event. Specifically, CXR-LT 2024 features three tasks: (i) long-tailed classification on a large, noisy test set, (ii) long-tailed classification on a manually annotated "gold standard" subset, and (iii) zero-shot generalization to five previously unseen disease findings. This paper provides an overview of CXR-LT 2024, detailing the data curation process and consolidating state-of-the-art solutions, including the use of multimodal models for rare disease detection, advanced generative approaches to handle noisy labels, and zero-shot learning strategies for unseen diseases. Additionally, the expanded dataset enhances disease coverage to better represent real-world clinical settings, offering a valuable resource for future research. By synthesizing the insights and innovations of participating teams, we aim to advance the development of clinically realistic and generalizable diagnostic models for chest radiography.
4.1LGOct 20, 2025
Convergence Rates for Gradient Descent on the Edge of Stability in Overparametrised Least SquaresLachlan Ewen MacDonald, Hancheng Min, Leandro Palma et al.
Classical optimisation theory guarantees monotonic objective decrease for gradient descent (GD) when employed in a small step size, or ``stable", regime. In contrast, gradient descent on neural networks is frequently performed in a large step size regime called the ``edge of stability", in which the objective decreases non-monotonically with an observed implicit bias towards flat minima. In this paper, we take a step toward quantifying this phenomenon by providing convergence rates for gradient descent with large learning rates in an overparametrised least squares setting. The key insight behind our analysis is that, as a consequence of overparametrisation, the set of global minimisers forms a Riemannian manifold $M$, which enables the decomposition of the GD dynamics into components parallel and orthogonal to $M$. The parallel component corresponds to Riemannian gradient descent on the objective sharpness, while the orthogonal component is a bifurcating dynamical system. This insight allows us to derive convergence rates in three regimes characterised by the learning rate size: (a) the subcritical regime, in which transient instability is overcome in finite time before linear convergence to a suboptimally flat global minimum; (b) the critical regime, in which instability persists for all time with a power-law convergence toward the optimally flat global minimum; and (c) the supercritical regime, in which instability persists for all time with linear convergence to an orbit of period two centred on the optimally flat global minimum.
10.2CVJul 5, 2025
Voyaging into Perpetual Dynamic Scenes from a Single ViewFengrui Tian, Tianjiao Ding, Jinqi Luo et al.
The problem of generating a perpetual dynamic scene from a single view is an important problem with widespread applications in augmented and virtual reality, and robotics. However, since dynamic scenes regularly change over time, a key challenge is to ensure that different generated views be consistent with the underlying 3D motions. Prior work learns such consistency by training on multiple views, but the generated scene regions often interpolate between training views and fail to generate perpetual views. To address this issue, we propose DynamicVoyager, which reformulates dynamic scene generation as a scene outpainting problem with new dynamic content. As 2D outpainting models struggle at generating 3D consistent motions from a single 2D view, we enrich 2D pixels with information from their 3D rays that facilitates learning of 3D motion consistency. More specifically, we first map the single-view video input to a dynamic point cloud using the estimated video depths. We then render a partial video of the point cloud from a novel view and outpaint the missing regions using ray information (e.g., the distance from a ray to the point cloud) to generate 3D consistent motions. Next, we use the outpainted video to update the point cloud, which is used for outpainting the scene from future novel views. Moreover, we can control the generated content with the input text prompt. Experiments show that our model can generate perpetual scenes with consistent motions along fly-through cameras. Project page: https://tianfr.github.io/DynamicVoyager.
12.4LGSep 14, 2020
A Game Theoretic Analysis of Additive Adversarial Attacks and DefensesAmbar Pal, René Vidal
Research in adversarial learning follows a cat and mouse game between attackers and defenders where attacks are proposed, they are mitigated by new defenses, and subsequently new attacks are proposed that break earlier defenses, and so on. However, it has remained unclear as to whether there are conditions under which no better attacks or defenses can be proposed. In this paper, we propose a game-theoretic framework for studying attacks and defenses which exist in equilibrium. Under a locally linear decision boundary model for the underlying binary classifier, we prove that the Fast Gradient Method attack and the Randomized Smoothing defense form a Nash Equilibrium. We then show how this equilibrium defense can be approximated given finitely many samples from a data-generating distribution, and derive a generalization bound for the performance of our approximation.
19.3LGJun 26, 2018
On the Implicit Bias of DropoutPoorya Mianjy, Raman Arora, Rene Vidal
Algorithmic approaches endow deep learning systems with implicit bias that helps them generalize even in over-parametrized settings. In this paper, we focus on understanding such a bias induced in learning through dropout, a popular technique to avoid overfitting in deep learning. For single hidden-layer linear neural networks, we show that dropout tends to make the norm of incoming/outgoing weight vectors of all the hidden nodes equal. In addition, we provide a complete characterization of the optimization landscape induced by dropout.