Yang Tao

Chiao-Yi Wang, Havish S Gadde, Yi-Ting Shen et al.

Capillary-level retinal blood flow (RBF) has strong potential as a biomarker for various ocular diseases. However, modalities for measuring capillary-level RBF remain limited. Erythrocyte-mediated angiography (EMA), an emerging imaging technique, enables capillary-level RBF measurement by visualizing individual erythrocytes, yet automated erythrocyte detection and tracking, which are essential for quantifying blood flow, remain largely unexplored. To address this gap, we propose EMTrack, a novel framework featuring a flow-context module for erythrocyte detection that distinguishes moving from paused cells and a topology-aware tracking strategy that enables tracking under large inter-frame displacements and substantial motion variations. In addition, we establish RBF-EMA, a new EMA dataset with comprehensive erythrocyte detection and tracking annotations. Experimental results demonstrate that our method outperforms baseline methods both quantitatively and qualitatively on detection and tracking tasks in the RBF-EMA dataset. Moreover, RBF quantification results highlight the strong potential of our framework for automated retinal blood flow measurement.

Chiao-Yi Wang, Faranguisse Kakhi Sadrieh, Yi-Ting Shen et al.

The measurement of retinal blood flow (RBF) in capillaries can provide a powerful biomarker for the early diagnosis and treatment of ocular diseases. However, no single modality can determine capillary flowrates with high precision. Combining erythrocyte-mediated angiography (EMA) with optical coherence tomography angiography (OCTA) has the potential to achieve this goal, as EMA can measure the absolute 2D RBF of retinal microvasculature and OCTA can provide the 3D structural images of capillaries. However, multimodal retinal image registration between these two modalities remains largely unexplored. To fill this gap, we establish MEMO, the first public multimodal EMA and OCTA retinal image dataset. A unique challenge in multimodal retinal image registration between these modalities is the relatively large difference in vessel density (VD). To address this challenge, we propose a segmentation-based deep-learning framework (VDD-Reg) and a new evaluation metric (MSD), which provide robust results despite differences in vessel density. VDD-Reg consists of a vessel segmentation module and a registration module. To train the vessel segmentation module, we further designed a two-stage semi-supervised learning framework (LVD-Seg) combining supervised and unsupervised losses. We demonstrate that VDD-Reg outperforms baseline methods quantitatively and qualitatively for cases of both small VD differences (using the CF-FA dataset) and large VD differences (using our MEMO dataset). Moreover, VDD-Reg requires as few as three annotated vessel segmentation masks to maintain its accuracy, demonstrating its feasibility.

Tian Meng, Yang Tao, Wuliang Yin

The task of few-shot image classification and segmentation (FS-CS) requires the classification and segmentation of target objects in a query image, given only a few examples of the target classes. We introduce a method that utilises large language models (LLM) as an agent to address the FS-CS problem in a training-free manner. By making the LLM the task planner and off-the-shelf vision models the tools, the proposed method is capable of classifying and segmenting target objects using only image-level labels. Specifically, chain-of-thought prompting and in-context learning guide the LLM to observe support images like human; vision models such as Segment Anything Model (SAM) and GPT-4Vision assist LLM understand spatial and semantic information at the same time. Ultimately, the LLM uses its summarizing and reasoning capabilities to classify and segment the query image. The proposed method's modular framework makes it easily extendable. Our approach achieves state-of-the-art performance on the Pascal-5i dataset.

Tian Meng, Yang Tao, Wuliang Yin

Structured State Space Models (SSMs) have emerged as compelling alternatives to Transformer architectures, offering linear-time complexity and superior performance in various sequence modeling tasks. Despite their advantages, SSMs like the original Mamba-2 face training difficulties due to the sensitivities introduced by the extended series of recurrent matrix multiplications. In this paper, we propose an advanced architecture that mitigates these challenges by decomposing A-multiplications into multiple groups and optimizing positional encoding through Grouped Finite Impulse Response (FIR) filtering. This new structure, denoted as Grouped FIR-enhanced SSM (GFSSM), employs semiseparable matrices for efficient computation. Furthermore, inspired by the "attention sink" phenomenon identified in streaming language models, we incorporate a similar mechanism to enhance the stability and performance of our model over extended sequences. Our approach further bridges the gap between SSMs and Transformer architectures, offering a viable path forward for scalable and high-performing sequence modeling.

Tian Meng, Yang Tao, Ruilin Lyu et al.

The task of few-shot image classification and segmentation (FS-CS) involves classifying and segmenting target objects in a query image, given only a few examples of the target classes. We introduce the Vision-Instructed Segmentation and Evaluation (VISE) method that transforms the FS-CS problem into the Visual Question Answering (VQA) problem, utilising Vision-Language Models (VLMs), and addresses it in a training-free manner. By enabling a VLM to interact with off-the-shelf vision models as tools, the proposed method is capable of classifying and segmenting target objects using only image-level labels. Specifically, chain-of-thought prompting and in-context learning guide the VLM to answer multiple-choice questions like a human; vision models such as YOLO and Segment Anything Model (SAM) assist the VLM in completing the task. The modular framework of the proposed method makes it easily extendable. Our approach achieves state-of-the-art performance on the Pascal-5i and COCO-20i datasets.

Behzad Sadrfaridpour, Yiannis Aloimonos, Miao Yu et al.

Oysters are an essential species in the Chesapeake Bay living ecosystem. Oysters are filter feeders and considered the vacuum cleaners of the Chesapeake Bay that can considerably improve the Bay's water quality. Many oyster restoration programs have been initiated in the past decades and continued to date. Advancements in robotics and artificial intelligence have opened new opportunities for aquaculture. Drone-like ROVs with high maneuverability are getting more affordable and, if equipped with proper sensory devices, can monitor the oysters. This work presents our efforts for videography of the Chesapeake bay bottom using an ROV, constructing a database of oysters, implementing Mask R-CNN for detecting oysters, and counting their number in a video by tracking them.

Tian Meng, Yang Tao, Ziqi Chen et al.

Eddy current testing (ECT) is an effective technique in the evaluation of the depth of metal surface defects. However, in practice, the evaluation primarily relies on the experience of an operator and is often carried out by manual inspection. In this paper, we address the challenges of automatic depth evaluation of metal surface defects by virtual of state-of-the-art deep learning (DL) techniques. The main contributions are three-fold. Firstly, a highly-integrated portable ECT device is developed, which takes advantage of an advanced field programmable gate array (Zynq-7020 system on chip) and provides fast data acquisition and in-phase/quadrature demodulation. Secondly, a dataset, termed as MDDECT, is constructed using the ECT device by human operators and made openly available. It contains 48,000 scans from 18 defects of different depths and lift-offs. Thirdly, the depth evaluation problem is formulated as a time series classification problem, and various state-of-the-art 1-d residual convolutional neural networks are trained and evaluated on the MDDECT dataset. A 38-layer 1-d ResNeXt achieves an accuracy of 93.58% in discriminating the surface defects in a stainless steel sheet. The depths of the defects vary from 0.3 mm to 2.0 mm in a resolution of 0.1 mm. In addition, results show that the trained ResNeXt1D-38 model is immune to lift-off signals.