LGJun 26, 2025Code
MolProphecy: Bridging Medicinal Chemists' Knowledge and Molecular Pre-Trained Models via a Multi-Modal FrameworkJianping Zhao, Qiong Zhou, Tian Wang et al.
MolProphecy is a human-in-the-loop (HITL) multi-modal framework designed to integrate chemists' domain knowledge into molecular property prediction models. While molecular pre-trained models have enabled significant gains in predictive accuracy, they often fail to capture the tacit, interpretive reasoning central to expert-driven molecular design. To address this, MolProphecy employs ChatGPT as a virtual chemist to simulate expert-level reasoning and decision-making. The generated chemist knowledge is embedded by the large language model (LLM) as a dedicated knowledge representation and then fused with graph-based molecular features through a gated cross-attention mechanism, enabling joint reasoning over human-derived and structural features. Evaluated on four benchmark datasets (FreeSolv, BACE, SIDER, and ClinTox), MolProphecy outperforms state-of-the-art (SOTA) models, achieving a 15.0 percent reduction in RMSE on FreeSolv and a 5.39 percent improvement in AUROC on BACE. Analysis reveals that chemist knowledge and structural features provide complementary contributions, improving both accuracy and interpretability. MolProphecy offers a practical and generalizable approach for collaborative drug discovery, with the flexibility to incorporate real chemist input in place of the current simulated proxy--without the need for model retraining. The implementation is publicly available at https://github.com/zhangruochi/MolProphecy.
LGNov 17, 2025
Real-time distortion prediction in metallic additive manufacturing via a physics-informed neural operator approachMingxuan Tian, Haochen Mu, Donghong Ding et al.
With the development of digital twins and smart manufacturing systems, there is an urgent need for real-time distortion field prediction to control defects in metal Additive Manufacturing (AM). However, numerical simulation methods suffer from high computational cost, long run-times that prevent real-time use, while conventional Machine learning (ML) models struggle to extract spatiotemporal features for long-horizon prediction and fail to decouple thermo-mechanical fields. This paper proposes a Physics-informed Neural Operator (PINO) to predict z and y-direction distortion for the future 15 s. Our method, Physics-informed Deep Operator Network-Recurrent Neural Network (PIDeepONet-RNN) employs trunk and branch network to process temperature history and encode distortion fields, respectively, enabling decoupling of thermo-mechanical responses. By incorporating the heat conduction equation as a soft constraint, the model ensures physical consistency and suppresses unphysical artifacts, thereby establishing a more physically consistent mapping between the thermal history and distortion. This is important because such a basis function, grounded in physical laws, provides a robust and interpretable foundation for predictions. The proposed models are trained and tested using datasets generated from experimentally validated Finite Element Method (FEM). Evaluation shows that the model achieves high accuracy, low error accumulation, time efficiency. The max absolute errors in the z and y-directions are as low as 0.9733 mm and 0.2049 mm, respectively. The error distribution shows high errors in the molten pool but low gradient norms in the deposited and key areas. The performance of PINO surrogate model highlights its potential for real-time long-horizon physics field prediction in controlling defects.