Yangyu Huang

Zhaojian Yu, Xin Zhang, Ning Shang et al.

Recent work demonstrates that, after instruction tuning, Code Large Language Models (Code LLMs) can obtain impressive capabilities to address a wide range of code-related tasks. However, current instruction tuning methods for Code LLMs mainly focus on the traditional code generation task, resulting in poor performance in complex multi-task scenarios. In this paper, we concentrate on multiple code-related tasks and present WaveCoder, a series of Code LLMs trained with Widespread And Versatile Enhanced instruction data. To enable the models to tackle complex code-related tasks, we propose a method to stably generate diverse, high-quality instruction data from open source code dataset in multi-task scenarios and obtain CodeSeaXDataset, a dataset comprising 19,915 instruction instances across 4 code-related tasks, which is aimed at improving the generalization ability of Code LLM. Our experiments demonstrate that WaveCoder models significantly outperform other open-source models in terms of the generalization ability across different code-related tasks. Moreover, WaveCoder-Ultra-6.7B presents the state-of-the-art generalization abilities on a wide range of code-related tasks.

Qihao Zhao, Yangyu Huang, Tengchao Lv et al.

Multiple-choice question (MCQ) datasets like Massive Multitask Language Understanding (MMLU) are widely used to evaluate the commonsense, understanding, and problem-solving abilities of large language models (LLMs). However, the open-source nature of these benchmarks and the broad sources of training data for LLMs have inevitably led to benchmark contamination, resulting in unreliable evaluation results. To alleviate this issue, we propose a contamination-free and more challenging MCQ benchmark called MMLU-CF. This benchmark reassesses LLMs' understanding of world knowledge by averting both unintentional and malicious data leakage. To avoid unintentional data leakage, we source data from a broader domain and design three decontamination rules. To prevent malicious data leakage, we divide the benchmark into validation and test sets with similar difficulty and subject distributions. The test set remains closed-source to ensure reliable results, while the validation set is publicly available to promote transparency and facilitate independent verification. Our evaluation of mainstream LLMs reveals that the powerful GPT-4o achieves merely a 5-shot score of 73.4% and a 0-shot score of 71.9% on the test set, which indicates the effectiveness of our approach in creating a more rigorous and contamination-free evaluation standard. The GitHub repository is available at https://github.com/microsoft/MMLU-CF and the dataset refers to https://huggingface.co/datasets/microsoft/MMLU-CF.

Yaoxiang Wang, Haoling Li, Xin Zhang et al.

Existing methods for code generation use code snippets as seed data, restricting the complexity and diversity of the synthesized data. In this paper, we introduce a novel feature tree-based synthesis framework, which revolves around hierarchical code features derived from high-level abstractions of code. The feature tree is constructed from raw data and refined iteratively to increase the quantity and diversity of the extracted features, which captures and recognizes more complex patterns and relationships within the code. By adjusting the depth and breadth of the sampled subtrees, our framework provides precise control over the complexity of the generated code, enabling functionalities that range from function-level operations to multi-file scenarios. We fine-tuned widely-used base models to obtain EpiCoder series, achieving state-of-the-art performance on multiple benchmarks at both the function and file levels. In particular, empirical evidence indicates that our approach shows significant potential in the synthesizing of repository-level code data. Our code and data are publicly available at https://github.com/microsoft/EpiCoder.

Jie Wu, Haoling Li, Xin Zhang et al.

Preference learning extends the performance of Code LLMs beyond traditional supervised fine-tuning by leveraging relative quality comparisons. In existing approaches, a set of n candidate solutions is evaluated based on test case success rates, with the candidate demonstrating a higher pass rate being labeled as positive and its counterpart with a lower pass rate as negative. However, because this approach aligns entire failing code blocks rather than pinpointing specific errors, it lacks the granularity necessary to capture meaningful error-correction relationships. As a result, the model is unable to learn more informative error-correction patterns. To address these issues, we propose Target-DPO, a new preference alignment framework that mimics human iterative debugging to refine Code LLMs. Target-DPO explicitly locates error regions and aligns the corresponding tokens via a tailored DPO algorithm. To facilitate it, we introduce the CodeFlow dataset, where samples are iteratively refined until passing tests, with modifications capturing error corrections. Extensive experiments show that a diverse suite of Code LLMs equipped with Target-DPO achieves significant performance gains in code generation and improves on challenging tasks like BigCodeBench. In-depth analysis reveals that Target-DPO yields fewer errors. Code, model and datasets are in: https://github.com/JieWu02/Target-DPO.

Steven Liu, Jane Luo, Xin Zhang et al.

Given that Large Language Models (LLMs) are increasingly applied to automate software development, comprehensive software assurance spans three distinct goals: regression prevention, reactive reproduction, and proactive discovery. Current evaluations systematically overlook the third goal. Specifically, they either treat existing code as ground truth (a compliance trap) for regression prevention, or depend on post-failure artifacts (e.g., issue reports) for bug reproduction-so they rarely surface defects before failures. To bridge this gap, we present TestExplora, a benchmark designed to evaluate LLMs as proactive testers within full-scale, realistic repository environments. TestExplora contains 2,389 tasks from 482 repositories and hides all defect-related signals. Models must proactively find bugs by comparing implementations against documentation-derived intent, using documentation as the oracle. Furthermore, to keep evaluation sustainable and reduce leakage, we propose continuous, time-aware data collection. Our evaluation reveals a significant capability gap: state-of-the-art models achieve a maximum Fail-to-Pass (F2P) rate of only 16.06%. Further analysis indicates that navigating complex cross-module interactions and leveraging agentic exploration are critical to advancing LLMs toward autonomous software quality assurance. Consistent with this, SWEAgent instantiated with GPT-5-mini achieves an F2P of 17.27% and an F2P@5 of 29.7%, highlighting the effectiveness and promise of agentic exploration in proactive bug discovery tasks.

Wei Li, Xin Zhang, Zhongxin Guo et al.

Implementing new features in repository-level codebases is a crucial application of code generation models. However, current benchmarks lack a dedicated evaluation framework for this capability. To fill this gap, we introduce FEA-Bench, a benchmark designed to assess the ability of large language models (LLMs) to perform incremental development within code repositories. We collect pull requests from 83 GitHub repositories and use rule-based and intent-based filtering to construct task instances focused on new feature development. Each task instance containing code changes is paired with relevant unit test files to ensure that the solution can be verified. The feature implementation requires LLMs to simultaneously possess code completion capabilities for new components and code editing abilities for other relevant parts in the code repository, providing a more comprehensive evaluation method of LLMs' automated software engineering capabilities. Experimental results show that LLMs perform significantly worse in the FEA-Bench, highlighting considerable challenges in such repository-level incremental code development.

Yaoyao Chang, Lei Cui, Li Dong et al.

Pre-training Large Language Models (LLMs) on high-quality, meticulously curated datasets is widely recognized as critical for enhancing their performance and generalization capabilities. This study explores the untapped potential of Common Crawl as a comprehensive and flexible resource for pre-training LLMs, addressing both general-purpose language understanding and specialized domain knowledge. We introduce RedStone, an innovative and scalable pipeline engineered to extract and process data from Common Crawl, facilitating the creation of extensive and varied pre-training datasets. Unlike traditional datasets, which often require expensive curation and domain-specific expertise, RedStone leverages the breadth of Common Crawl to deliver datasets tailored to a wide array of domains. In this work, we exemplify its capability by constructing pre-training datasets across multiple fields, including general language understanding, code, mathematics, and question-answering tasks. The flexibility of RedStone allows for easy adaptation to other specialized domains, significantly lowering the barrier to creating valuable domain-specific datasets. Our findings demonstrate that Common Crawl, when harnessed through effective pipelines like RedStone, can serve as a rich, renewable source of pre-training data, unlocking new avenues for domain adaptation and knowledge discovery in LLMs. This work also underscores the importance of innovative data acquisition strategies and highlights the role of web-scale data as a powerful resource in the continued evolution of LLMs. RedStone code and data samples will be publicly available at \url{https://aka.ms/redstone}.

Yalun Dai, Yangyu Huang, Xin Zhang et al.

Data is fundamental to the training of language models (LM). Recent research has been dedicated to data efficiency, which aims to maximize performance by selecting a minimal or optimal subset of training data. Techniques such as data filtering, sampling, and selection play a crucial role in this area. To complement it, we define Data Efficacy, which focuses on maximizing performance by optimizing the organization of training data and remains relatively underexplored. This work introduces a general paradigm, DELT, for considering data efficacy in LM training, which highlights the significance of training data organization. DELT comprises three components: Data Scoring, Data Selection, and Data Ordering. Among these components, we design Learnability-Quality Scoring (LQS), as a new instance of Data Scoring, which considers both the learnability and quality of each data sample from the gradient consistency perspective. We also devise Folding Ordering (FO), as a novel instance of Data Ordering, which addresses issues such as model forgetting and data distribution bias. Comprehensive experiments validate the data efficacy in LM training, which demonstrates the following: Firstly, various instances of the proposed DELT enhance LM performance to varying degrees without increasing the data scale and model size. Secondly, among these instances, the combination of our proposed LQS for data scoring and Folding for data ordering achieves the most significant improvement. Lastly, data efficacy can be achieved together with data efficiency by applying data selection. Therefore, we believe that data efficacy is a promising foundational area in LM training.

Jane Luo, Chengyu Yin, Xin Zhang et al.

Current repository agents encounter a reasoning disconnect due to fragmented representations, as existing methods rely on isolated API documentation or dependency graphs that lack semantic depth. We consider repository comprehension and generation to be inverse processes within a unified cycle: generation expands intent into implementation, while comprehension compresses implementation back into intent. To address this, we propose RPG-Encoder, a framework that generalizes the Repository Planning Graph (RPG) from a static generative blueprint into a unified, high-fidelity representation. RPG-Encoder closes the reasoning loop through three mechanisms: (1) Encoding raw code into the RPG that combines lifted semantic features with code dependencies; (2) Evolving the topology incrementally to decouple maintenance costs from repository scale, reducing overhead by 95.7%; and (3) Operating as a unified interface for structure-aware navigation. In evaluations, RPG-Encoder establishes state-of-the-art localization performance on SWE-bench Verified with 93.7% Acc@5 and exceeds the best baseline by over 10% in localization accuracy on SWE-bench Live Lite. These results highlight our superior fine-grained precision in complex codebases. Furthermore, it achieves 98.5% reconstruction coverage on RepoCraft, confirming RPG's high-fidelity capacity to mirror the original codebase and closing the loop between intent and implementation.

Jane Luo, Xin Zhang, Steven Liu et al.

Large language models excel at generating individual functions or single files of code, yet generating complete repositories from scratch remains a fundamental challenge. This capability is key to building coherent software systems from high-level specifications and realizing the full potential of automated code generation. The process requires planning at two levels: deciding what features and modules to build (proposal stage) and defining their implementation details (implementation stage). Current approaches rely on natural language planning, which often produces unclear specifications, misaligned components, and brittle designs due to its inherent ambiguity and lack of structure. To address these limitations, we introduce the Repository Planning Graph (RPG), a structured representation that encodes capabilities, file structures, data flows, and functions in a unified graph. By replacing free-form natural language with an explicit blueprint, RPG enables consistent long-horizon planning for repository generation. Building on RPG, we develop ZeroRepo, a graph-driven framework that operates in three stages: proposal-level planning, implementation-level construction, and graph-guided code generation with test validation. To evaluate, we construct RepoCraft, a benchmark of six real-world projects with 1,052 tasks. On RepoCraft, ZeroRepo produces nearly 36K Code Lines and 445K Code Tokens, on average 3.9$\times$ larger than the strongest baseline (Claude Code), and 68$\times$ larger than other baselines. It achieves 81.5% coverage and 69.7% test accuracy, improving over Claude Code by 27.3 and 35.8 points. Further analysis shows that RPG models complex dependencies, enables more sophisticated planning through near-linear scaling, and improves agent understanding of repositories, thus accelerating localization.