Ruta Binkyte

Tejumade Afonja, Ivaxi Sheth, Ruta Binkyte et al.

Gene regulatory networks (GRNs) represent the causal relationships between transcription factors (TFs) and target genes in single-cell RNA sequencing (scRNA-seq) data. Understanding these networks is crucial for uncovering disease mechanisms and identifying therapeutic targets. In this work, we investigate the potential of large language models (LLMs) for GRN discovery, leveraging their learned biological knowledge alone or in combination with traditional statistical methods. We develop a task-based evaluation strategy to address the challenge of unavailable ground truth causal graphs. Specifically, we use the GRNs suggested by LLMs to guide causal synthetic data generation and compare the resulting data against the original dataset. Our statistical and biological assessments show that LLMs can support statistical modeling and data synthesis for biological research.

Sai Suresh Macharla Vasu, Ivaxi Sheth, Hui-Po Wang et al.

The adoption of large language models (LLMs) is transforming the peer review process, from assisting reviewers in writing more detailed evaluations to generating entire reviews automatically. While these capabilities offer exciting opportunities, they also raise critical concerns about fairness and reliability. In this paper, we investigate bias in LLM-generated peer reviews by conducting controlled experiments on sensitive metadata, including author affiliation and gender. Our analysis consistently shows affiliation bias favoring institutions highly ranked on common academic rankings. Additionally, we find some gender preferences, which, even though subtle in magnitude, have the potential to compound over time. Notably, we uncover implicit biases that become more evident with token-based soft ratings.

Ivaxi Sheth, Jan Wehner, Sahar Abdelnabi et al.

AI advancements have been significantly driven by a combination of foundation models and curiosity-driven learning aimed at increasing capability and adaptability. A growing area of interest within this field is Open-Endedness - the ability of AI systems to continuously and autonomously generate novel and diverse artifacts or solutions. This has become relevant for accelerating scientific discovery and enabling continual adaptation in AI agents. This position paper argues that the inherently dynamic and self-propagating nature of Open-Ended AI introduces significant, underexplored risks, including challenges in maintaining alignment, predictability, and control. This paper systematically examines these challenges, proposes mitigation strategies, and calls for action for different stakeholders to support the safe, responsible and successful development of Open-Ended AI.